The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP043405	Streptococcus ratti strain ATCC 31377 chromosome, complete genome	2096943	101985	110677	2096943		Staphylococcus_phage(57.14%)	7	NA	NA
WP_003089116.1|101985_104145_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	61.8	1.2e-258
WP_003089117.1|104605_105571_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	69.5	2.7e-125
WP_003089118.1|105670_106144_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	52.0	2.4e-39
WP_003089119.1|106158_107334_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	48.2	5.8e-98
WP_003089121.1|107326_107935_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	36.5	2.7e-30
WP_003089123.1|107940_108996_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	31.6	4.9e-40
WP_003089125.1|109546_110677_-	acetylornithine transaminase	NA	A0A1V0SKB7	Klosneuvirus	27.9	8.8e-27
>prophage 2
NZ_CP043405	Streptococcus ratti strain ATCC 31377 chromosome, complete genome	2096943	572476	584181	2096943		Staphylococcus_phage(25.0%)	12	NA	NA
WP_003090064.1|572476_573115_-	transglycosylase SLT domain-containing protein	NA	Q4Z8Z7	Staphylococcus_phage	86.2	6.7e-24
WP_003090068.1|573274_574165_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A288TY55	Enterococcus_phage	78.8	8.7e-22
WP_003090070.1|574349_575144_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_003090072.1|575136_575979_-	energy-coupling factor transporter ATPase	NA	A0A2H4PQG7	Staphylococcus_phage	27.0	7.0e-13
WP_037611270.1|575954_576797_-	energy-coupling factor transporter ATPase	NA	G9BWD6	Planktothrix_phage	32.3	3.3e-23
WP_003090075.1|576800_577343_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_003090077.1|577354_578365_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_003090079.1|578437_579730_-	insulinase family protein	NA	A0A2H4UVM3	Bodo_saltans_virus	26.7	1.8e-07
WP_003090081.1|579730_580978_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	44.2	4.0e-97
WP_003091077.1|581057_581432_+	S4 domain-containing protein YaaA	NA	A0A1X9I5V8	Streptococcus_phage	61.3	4.2e-18
WP_003090084.1|581434_582526_+	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
WP_003090086.1|582699_584181_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	39.6	5.8e-95
>prophage 3
NZ_CP043405	Streptococcus ratti strain ATCC 31377 chromosome, complete genome	2096943	628606	639045	2096943		Microbacterium_phage(16.67%)	6	NA	NA
WP_003086982.1|628606_632332_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	25.4	7.6e-35
WP_003086980.1|632466_633906_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	32.8	4.1e-53
WP_003086979.1|634147_635173_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	44.6	8.1e-64
WP_003086977.1|635172_635724_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.8	6.4e-23
WP_003086974.1|636134_637685_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	NA	Q58MG4	Prochlorococcus_phage	47.2	1.7e-73
WP_003086973.1|637896_639045_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A0E3XB61	Gordonia_phage	37.6	1.1e-11
>prophage 4
NZ_CP043405	Streptococcus ratti strain ATCC 31377 chromosome, complete genome	2096943	855629	916696	2096943	bacteriocin,transposase,tRNA,protease	Streptococcus_phage(26.67%)	60	NA	NA
WP_003086831.1|855629_856307_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_003086830.1|856422_857193_-	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	32.3	3.3e-25
WP_003086829.1|857284_858352_-	glutamyl aminopeptidase	NA	NA	NA	NA	NA
WP_003086826.1|858470_858758_+	DUF4651 domain-containing protein	NA	NA	NA	NA	NA
WP_003086824.1|858754_859084_+	thioredoxin family protein	NA	A0A1V0SD63	Indivirus	36.8	1.4e-06
WP_003086821.1|859147_859774_+	DUF4479 domain-containing protein	NA	NA	NA	NA	NA
WP_003086820.1|860166_860562_+	single-stranded DNA-binding protein	NA	A0A1X9I6R5	Streptococcus_phage	42.4	5.4e-24
WP_003086818.1|861031_861991_+	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003086816.1|861990_863316_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_003086814.1|863312_863993_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003086812.1|863985_865293_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_003086811.1|865588_866026_+	PTS fructose transporter subunit IIA	NA	NA	NA	NA	NA
WP_003086809.1|866040_866535_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_003086807.1|866557_867412_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_003086806.1|867413_868250_+	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA	NA
WP_003086804.1|868267_868564_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003086802.1|868685_868973_+	co-chaperone GroES	NA	A0A221S322	uncultured_virus	37.0	1.3e-11
WP_003086800.1|869098_870724_+	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	56.1	1.3e-153
WP_003086799.1|871169_872873_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003086797.1|873092_873971_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_150880997.1|874014_876285_+	penicillin-binding protein	NA	NA	NA	NA	NA
WP_003086794.1|876336_876489_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_003086793.1|876500_876677_+	preprotein translocase subunit SecE	NA	NA	NA	NA	NA
WP_003086790.1|876895_877435_+	transcription termination/antitermination protein NusG	NA	NA	NA	NA	NA
WP_003086788.1|877647_878445_+	patatin family protein	NA	NA	NA	NA	NA
WP_003086786.1|878580_879039_+	bacterioferritin (cytochrome b1)	NA	NA	NA	NA	NA
WP_150880999.1|879244_881746_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	65.5	0.0e+00
WP_150881001.1|881937_882801_+	helix-turn-helix domain-containing protein	NA	A0A1X9I6E0	Streptococcus_phage	34.7	1.0e-06
WP_003086781.1|883053_885933_+	DUF4135 domain-containing protein	NA	NA	NA	NA	NA
WP_003086779.1|885943_886768_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	40.4	5.4e-34
WP_003086777.1|886757_887474_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003086775.1|887473_890089_+	DUF4135 domain-containing protein	NA	NA	NA	NA	NA
WP_003086773.1|890125_892222_+	peptidase domain-containing ABC transporter	NA	W8CYL7	Bacillus_phage	25.5	2.3e-20
WP_003086771.1|892320_892509_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003086770.1|892521_892707_+	plantaricin C family lantibiotic	NA	NA	NA	NA	NA
WP_126417900.1|892857_894085_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	55.4	1.3e-121
WP_003086764.1|894281_894407_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003086763.1|894617_895430_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003086761.1|895615_896458_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003086760.1|896714_898088_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_003086758.1|898080_899145_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.0	5.2e-29
WP_003086756.1|899146_899836_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003086754.1|899895_900672_+	carbon-nitrogen family hydrolase	NA	NA	NA	NA	NA
WP_003086751.1|900919_901765_+	S-adenosyl-l-methionine hydroxide adenosyltransferase family protein	NA	NA	NA	NA	NA
WP_003086749.1|902335_904012_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	24.6	7.4e-22
WP_003086747.1|904004_904775_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA	NA
WP_126417896.1|904771_906122_+|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	53.2	1.5e-65
WP_081498706.1|906290_906551_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003086738.1|906476_907190_-	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_003086737.1|907275_907836_+	LemA family protein	NA	NA	NA	NA	NA
WP_003086736.1|907845_908745_+|protease	zinc metalloprotease HtpX	protease	NA	NA	NA	NA
WP_003086735.1|909199_909736_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003086734.1|910092_910782_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	31.8	3.1e-27
WP_003086732.1|910947_911439_+	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_003086730.1|911425_912592_+	replication initiation and membrane attachment protein	NA	NA	NA	NA	NA
WP_003086728.1|912592_913495_+	primosomal protein DnaI	NA	S5MU12	Brevibacillus_phage	30.9	1.4e-27
WP_003086718.1|913507_914818_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_003086714.1|915360_915642_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003086713.1|916279_916459_+|bacteriocin	bacteriocin	bacteriocin	NA	NA	NA	NA
WP_003086708.1|916495_916696_+|bacteriocin	ComC/BlpC family leader-containing pheromone/bacteriocin	bacteriocin	NA	NA	NA	NA
>prophage 5
NZ_CP043405	Streptococcus ratti strain ATCC 31377 chromosome, complete genome	2096943	1141647	1151006	2096943		Streptococcus_phage(50.0%)	9	NA	NA
WP_150881013.1|1141647_1143510_+	Stk1 family PASTA domain-containing Ser/Thr kinase	NA	V5L5T2	Insectomime_virus	34.3	1.4e-18
WP_003086440.1|1143642_1144338_+	transporter	NA	NA	NA	NA	NA
WP_003086442.1|1144334_1145339_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_126417906.1|1145325_1145973_+	response regulator transcription factor	NA	Q8QKV7	Ectocarpus_siliculosus_virus	35.2	7.0e-05
WP_003086446.1|1146016_1147429_+	Cof-type HAD-IIB family hydrolase	NA	A0A076FI46	Aureococcus_anophage	37.4	9.6e-23
WP_126417907.1|1147409_1147793_+	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_003086449.1|1147982_1148909_-	cysteine synthase A	NA	A0A1X9I5F1	Streptococcus_phage	79.3	5.0e-137
WP_003086451.1|1149003_1149633_-	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	59.7	1.1e-63
WP_003086453.1|1149704_1151006_+	DEAD/DEAH box helicase	NA	A0A1X9I5S6	Streptococcus_phage	54.7	1.5e-134
>prophage 6
NZ_CP043405	Streptococcus ratti strain ATCC 31377 chromosome, complete genome	2096943	1237243	1252406	2096943	transposase	Streptococcus_phage(84.62%)	21	NA	NA
WP_003087227.1|1237243_1238008_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	27.1	2.3e-15
WP_003087232.1|1238007_1238718_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.1	1.1e-19
WP_003087233.1|1238686_1238908_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003087234.1|1238970_1239630_+	CBS domain-containing protein	NA	M1NSC5	Streptococcus_phage	62.0	9.2e-69
WP_003087235.1|1239713_1240352_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	64.9	6.6e-72
WP_003087238.1|1240365_1241241_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	51.7	1.1e-77
WP_003087239.1|1241237_1242044_+	stage 0 sporulation family protein	NA	NA	NA	NA	NA
WP_003087240.1|1242036_1242369_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	58.2	4.7e-29
WP_003087241.1|1242374_1243241_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	72.1	1.1e-114
WP_003087242.1|1243604_1244840_+	ammonium transporter	NA	NA	NA	NA	NA
WP_003087243.1|1244856_1245198_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_003087247.1|1245427_1246519_+	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	79.6	1.1e-170
WP_003087248.1|1246631_1247162_+	GNAT family N-acetyltransferase	NA	M1PSC3	Streptococcus_phage	58.5	1.9e-56
WP_003087249.1|1247255_1248449_+	phosphoglycerate dehydrogenase	NA	M1NSB9	Streptococcus_phage	79.6	2.0e-178
WP_003087251.1|1248598_1249114_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	58.4	9.7e-50
WP_003087255.1|1249131_1249485_+	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	68.7	3.3e-41
WP_003087257.1|1249552_1250182_+	endonuclease III	NA	NA	NA	NA	NA
WP_126417909.1|1250425_1250653_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_003087260.1|1250627_1251047_-	VOC family protein	NA	NA	NA	NA	NA
WP_003087261.1|1251057_1251435_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003087263.1|1251578_1252406_-	exodeoxyribonuclease III	NA	M1PSC0	Streptococcus_phage	74.4	1.0e-117
>prophage 7
NZ_CP043405	Streptococcus ratti strain ATCC 31377 chromosome, complete genome	2096943	1648427	1657769	2096943		Bacillus_phage(42.86%)	9	NA	NA
WP_003088046.1|1648427_1649255_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.5	5.6e-23
WP_003088053.1|1649262_1650051_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003088057.1|1650832_1651321_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	58.6	5.6e-47
WP_126417929.1|1651334_1652066_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	47.3	1.7e-60
WP_003088062.1|1652047_1652494_-	6-carboxytetrahydropterin synthase QueD	NA	J9PV91	Bacillus_phage	59.9	2.9e-42
WP_003088064.1|1652493_1653147_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	53.8	2.7e-60
WP_003088066.1|1653778_1654207_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003088067.1|1654216_1656019_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.6	2.8e-35
WP_003088069.1|1656008_1657769_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.5	1.2e-43
