assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008803015.1_ASM880301v1	NZ_CP043405	Streptococcus ratti strain ATCC 31377 chromosome, complete genome	1	1579978-1580883	1	CRT	no		cas3,csa3,DEDDh,WYL,DinG,csm6,csn2,cas2,cas1,cas9,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	AATCNGAATCNCAAAGNG	18	0	0	NA	NA	NA	17	17	Orphan	cas3,csa3,DEDDh,WYL,DinG,csm6,csn2,cas2,cas1,cas9,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|381aa|up_9|NZ_CP043405.1_1564089_1565232_+	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|406aa|up_8|NZ_CP043405.1_1565481_1566699_+	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional	NA|317aa|up_7|NZ_CP043405.1_1567024_1567975_+	PRK09814, PRK09814, sugar transferase	NA|409aa|up_6|NZ_CP043405.1_1567979_1569206_+	PRK12417, secY, preprotein translocase subunit SecY; Reviewed	NA|526aa|up_5|NZ_CP043405.1_1569230_1570808_+	TIGR03713, acc_sec_asp1, accessory Sec system protein Asp1	NA|518aa|up_4|NZ_CP043405.1_1570800_1572354_+	TIGR03712, acc_sec_asp2, accessory Sec system protein Asp2	NA|137aa|up_3|NZ_CP043405.1_1572365_1572776_+	pfam15432, Sec-ASP3, Accessory Sec secretory system ASP3	NA|794aa|up_2|NZ_CP043405.1_1572842_1575224_+	TIGR03714, Protein_translocase_subunit_SecA_2, accessory Sec system translocase SecA2	NA|508aa|up_1|NZ_CP043405.1_1575235_1576759_+	TIGR02918, lipopolysaccharide_biosynthesis_protein, accessory Sec system glycosylation protein GtfA	NA|442aa|up_0|NZ_CP043405.1_1576739_1578065_+	TIGR02919, conserved_hypothetical_protein, accessory Sec system glycosyltransferase GtfB	NA|395aa|down_0|NZ_CP043405.1_1581269_1582454_+	smart00854, PGA_cap, Bacterial capsule synthesis protein PGA_cap	NA|105aa|down_1|NZ_CP043405.1_1583235_1583550_+	PRK05573, rplU, 50S ribosomal protein L21; Validated	NA|110aa|down_2|NZ_CP043405.1_1583558_1583888_+	cd16332, Prp-like, ribosomal-processing cysteine protease Prp and similar proteins	NA|98aa|down_3|NZ_CP043405.1_1583909_1584203_+	PRK05435, rpmA, 50S ribosomal protein L27; Validated	NA|115aa|down_4|NZ_CP043405.1_1585175_1585520_+	cd07046, BMC_PduU-EutS, 1,2-propanediol utilization protein U (PduU)/ethanolamine utilization protein S (EutS), Bacterial Micro-Compartment (BMC) domain	NA|145aa|down_5|NZ_CP043405.1_1585526_1585961_+	pfam10662, PduV-EutP, Ethanolamine utilisation - propanediol utilisation	NA|194aa|down_6|NZ_CP043405.1_1585960_1586542_+	pfam01923, Cob_adeno_trans, Cobalamin adenosyltransferase	NA|383aa|down_7|NZ_CP043405.1_1586655_1587804_+	cd08180, PDD, 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism	NA|115aa|down_8|NZ_CP043405.1_1587807_1588152_+	cd07046, BMC_PduU-EutS, 1,2-propanediol utilization protein U (PduU)/ethanolamine utilization protein S (EutS), Bacterial Micro-Compartment (BMC) domain	NA|189aa|down_9|NZ_CP043405.1_1588178_1588745_+	COG3707, AmiR, Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
GCF_008803015.1_ASM880301v1	NZ_CP043405	Streptococcus ratti strain ATCC 31377 chromosome, complete genome	2	1800571-1800737	1	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,DinG,csm6,csn2,cas2,cas1,cas9,cas6e,cas5,cas7,cse2gr11,cas8e	Orphan	CGTCAGTCTCCTATTTTCTTCTCGCTTTCTTCACGCCCTTTGTATCTTAAATAA	54	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,DinG,csm6,csn2,cas2,cas1,cas9,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|572aa|up_9|NZ_CP043405.1_1788863_1790579_+	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)	NA|578aa|up_8|NZ_CP043405.1_1790696_1792430_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|578aa|up_7|NZ_CP043405.1_1792426_1794160_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|202aa|up_6|NZ_CP043405.1_1794177_1794783_-	pfam13702, Lysozyme_like, Lysozyme-like	NA|326aa|up_5|NZ_CP043405.1_1794784_1795762_-	pfam04245, NA37, 37-kD nucleoid-associated bacterial protein	NA|421aa|up_4|NZ_CP043405.1_1795758_1797021_-	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed	NA|197aa|up_3|NZ_CP043405.1_1797030_1797621_-	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]	NA|277aa|up_2|NZ_CP043405.1_1797613_1798444_-	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional	NA|360aa|up_1|NZ_CP043405.1_1798443_1799523_-	PRK00591, prfA, peptide chain release factor 1; Validated	NA|192aa|up_0|NZ_CP043405.1_1799583_1800159_-	PRK04296, PRK04296, thymidine kinase; Provisional	NA|62aa|down_0|NZ_CP043405.1_1800749_1800935_+	PRK02289, PRK02289, 4-oxalocrotonate tautomerase; Provisional	NA|312aa|down_1|NZ_CP043405.1_1801024_1801960_+	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism]	NA|201aa|down_2|NZ_CP043405.1_1801985_1802588_+	COG0431, COG0431, Predicted flavoprotein [General function prediction only]	NA|415aa|down_3|NZ_CP043405.1_1802609_1803854_+	COG2461, COG2461, Uncharacterized conserved protein [Function unknown]	NA|502aa|down_4|NZ_CP043405.1_1804031_1805537_+	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]	NA|220aa|down_5|NZ_CP043405.1_1805551_1806211_+	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]	NA|507aa|down_6|NZ_CP043405.1_1806304_1807825_-	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|242aa|down_7|NZ_CP043405.1_1807821_1808547_-	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|153aa|down_8|NZ_CP043405.1_1808543_1809002_-	TIGR04472, reg_rSAM_mob, mobile rSAM pair MarR family regulator	NA|283aa|down_9|NZ_CP043405.1_1809248_1810097_-	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase
GCF_008803015.1_ASM880301v1	NZ_CP043405	Streptococcus ratti strain ATCC 31377 chromosome, complete genome	3	1976419-1977182	2,2,1	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	cas3,csa3,DEDDh,WYL,DinG,csm6,csn2,cas2,cas1,cas9,cas6e,cas5,cas7,cse2gr11,cas8e	Type II-C,Type II-A,Type II-B	GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC,GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC,GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	11,11,8	11	TypeII-C,TypeII-A,TypeII-B	cas3,csa3,DEDDh,WYL,DinG,csm6,csn2,cas2,cas1,cas9,cas6e,cas5,cas7,cse2gr11,cas8e	NA|223aa|up_6|NZ_CP043405.1_1968646_1969315_+,NA|204aa|up_5|NZ_CP043405.1_1969368_1969980_-,NA	NA|131aa|up_9|NZ_CP043405.1_1965645_1966038_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|348aa|up_8|NZ_CP043405.1_1966079_1967123_-	cd08287, FDH_like_ADH3, formaldehyde dehydrogenase (FDH)-like	NA|391aa|up_7|NZ_CP043405.1_1967349_1968522_-	pfam11187, DUF2974, Protein of unknown function (DUF2974)	NA|223aa|up_6|NZ_CP043405.1_1968646_1969315_+	NA	NA|204aa|up_5|NZ_CP043405.1_1969368_1969980_-	NA	NA|159aa|up_4|NZ_CP043405.1_1970061_1970538_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|613aa|up_3|NZ_CP043405.1_1970563_1972402_-	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|596aa|up_2|NZ_CP043405.1_1972753_1974541_-	pfam08363, GbpC, Glucan-binding protein C	NA|88aa|up_1|NZ_CP043405.1_1974705_1974969_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|298aa|up_0|NZ_CP043405.1_1975293_1976187_+	cd06529, S24_LexA-like, Peptidase S24 LexA-like proteins are involved in the SOS response leading to the repair of single-stranded DNA within the bacterial cell	NA|126aa|down_0|NZ_CP043405.1_1977337_1977715_-	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system	NA|69aa|down_1|NZ_CP043405.1_1977717_1977924_-	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,	csn2|221aa|down_2|NZ_CP043405.1_1978022_1978685_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|110aa|down_3|NZ_CP043405.1_1978674_1979004_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|290aa|down_4|NZ_CP043405.1_1979015_1979885_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1371aa|down_5|NZ_CP043405.1_1979884_1983997_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|431aa|down_6|NZ_CP043405.1_1984317_1985610_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|186aa|down_7|NZ_CP043405.1_1985953_1986511_-	pfam03358, FMN_red, NADPH-dependent FMN reductase	NA|844aa|down_8|NZ_CP043405.1_1986634_1989166_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|213aa|down_9|NZ_CP043405.1_1989510_1990149_-	COG4478, COG4478, Predicted membrane protein [Function unknown]
GCF_008803015.1_ASM880301v1	NZ_CP043405	Streptococcus ratti strain ATCC 31377 chromosome, complete genome	4	2078561-2078645	3	CRISPRCasFinder	no	DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,csa3,DEDDh,WYL,DinG,csm6,csn2,cas2,cas1,cas9,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	ACCCCCGCGTGTGCGGGTAAAAC	23	0	0	NA	NA	I-C,I-E,II-B	1	1	TypeI-E	cas3,csa3,DEDDh,WYL,DinG,csm6,csn2,cas2,cas1,cas9,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|327aa|up_9|NZ_CP043405.1_2065833_2066814_-	PRK12399, PRK12399, tagatose 1,6-diphosphate aldolase; Reviewed	NA|311aa|up_8|NZ_CP043405.1_2066816_2067749_-	PRK13508, PRK13508, tagatose-6-phosphate kinase; Provisional	NA|172aa|up_7|NZ_CP043405.1_2067763_2068279_-	PRK08622, PRK08622, galactose-6-phosphate isomerase subunit LacB; Reviewed	NA|142aa|up_6|NZ_CP043405.1_2068292_2068718_-	PRK08621, PRK08621, galactose-6-phosphate isomerase subunit LacA; Reviewed	NA|257aa|up_5|NZ_CP043405.1_2068977_2069748_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|53aa|up_4|NZ_CP043405.1_2070101_2070260_-	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs	NA|1211aa|up_3|NZ_CP043405.1_2070488_2074121_-	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|1082aa|up_2|NZ_CP043405.1_2074110_2077356_-	TIGR02774, putative_ATP-dependent_exonuclease_subunit_B, ATP-dependent nuclease subunit B	NA|91aa|up_1|NZ_CP043405.1_2077945_2078218_+	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family	NA|93aa|up_0|NZ_CP043405.1_2078218_2078497_+	pfam15738, YafQ_toxin, Bacterial toxin of type II toxin-antitoxin system, YafQ	DEDDh|301aa|down_0|NZ_CP043405.1_2081549_2082452_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|314aa|down_1|NZ_CP043405.1_2082453_2083395_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|214aa|down_2|NZ_CP043405.1_2083396_2084038_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|242aa|down_3|NZ_CP043405.1_2084037_2084763_-	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|358aa|down_4|NZ_CP043405.1_2084777_2085851_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|199aa|down_5|NZ_CP043405.1_2085840_2086437_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|561aa|down_6|NZ_CP043405.1_2086436_2088119_-	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cas3|901aa|down_7|NZ_CP043405.1_2088119_2090822_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|306aa|down_8|NZ_CP043405.1_2091113_2092031_+	pfam04228, Zn_peptidase, Putative neutral zinc metallopeptidase	NA|880aa|down_9|NZ_CP043405.1_2092434_2095074_-	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
GCF_008803015.1_ASM880301v1	NZ_CP043405	Streptococcus ratti strain ATCC 31377 chromosome, complete genome	5	2081008-2081526	2,4,3	PILER-CR,CRISPRCasFinder,CRT	no	DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	cas3,csa3,DEDDh,WYL,DinG,csm6,csn2,cas2,cas1,cas9,cas6e,cas5,cas7,cse2gr11,cas8e	Type I-E	AGGATCACCCCCGCGTGTGCGGGTAAAAC,AGGATCACCCCCGCGTGTGCGGGTAAAAC,AGGATCACCCCCGCGTGTGCGGGTAAAAC	29,29,29	0	0	NA	NA	I-C,I-E,II-B:I-C,I-E,II-B:I-C,I-E,II-B	8,8,8	8	TypeI-E	cas3,csa3,DEDDh,WYL,DinG,csm6,csn2,cas2,cas1,cas9,cas6e,cas5,cas7,cse2gr11,cas8e	NA,NA	NA|327aa|up_9|NZ_CP043405.1_2065833_2066814_-	PRK12399, PRK12399, tagatose 1,6-diphosphate aldolase; Reviewed	NA|311aa|up_8|NZ_CP043405.1_2066816_2067749_-	PRK13508, PRK13508, tagatose-6-phosphate kinase; Provisional	NA|172aa|up_7|NZ_CP043405.1_2067763_2068279_-	PRK08622, PRK08622, galactose-6-phosphate isomerase subunit LacB; Reviewed	NA|142aa|up_6|NZ_CP043405.1_2068292_2068718_-	PRK08621, PRK08621, galactose-6-phosphate isomerase subunit LacA; Reviewed	NA|257aa|up_5|NZ_CP043405.1_2068977_2069748_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|53aa|up_4|NZ_CP043405.1_2070101_2070260_-	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs	NA|1211aa|up_3|NZ_CP043405.1_2070488_2074121_-	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|1082aa|up_2|NZ_CP043405.1_2074110_2077356_-	TIGR02774, putative_ATP-dependent_exonuclease_subunit_B, ATP-dependent nuclease subunit B	NA|91aa|up_1|NZ_CP043405.1_2077945_2078218_+	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family	NA|93aa|up_0|NZ_CP043405.1_2078218_2078497_+	pfam15738, YafQ_toxin, Bacterial toxin of type II toxin-antitoxin system, YafQ	DEDDh|301aa|down_0|NZ_CP043405.1_2081549_2082452_-	pfam09707, Cas_Cas2CT1978, CRISPR-associated protein (Cas_Cas2CT1978)	cas1|314aa|down_1|NZ_CP043405.1_2082453_2083395_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|214aa|down_2|NZ_CP043405.1_2083396_2084038_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas5|242aa|down_3|NZ_CP043405.1_2084037_2084763_-	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|358aa|down_4|NZ_CP043405.1_2084777_2085851_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|199aa|down_5|NZ_CP043405.1_2085840_2086437_-	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2)	cas8e|561aa|down_6|NZ_CP043405.1_2086436_2088119_-	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1)	cas3|901aa|down_7|NZ_CP043405.1_2088119_2090822_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	NA|306aa|down_8|NZ_CP043405.1_2091113_2092031_+	pfam04228, Zn_peptidase, Putative neutral zinc metallopeptidase	NA|880aa|down_9|NZ_CP043405.1_2092434_2095074_-	COG0577, SalY, ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
