assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008807295.1_ASM880729v1	NZ_CP041452	Escherichia coli strain YPE3 chromosome, complete genome	1	1026427-1026821	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,PD-DExK,WYL,cas2,DEDDh,DinG,c2c9_V-U4,Cas14u_CAS-V	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACC	28,29,28	0	0	NA	NA	I-E:I-E:I-E	6,6,6	6	Orphan	cas3,csa3,PD-DExK,WYL,cas2,DEDDh,DinG,c2c9_V-U4,Cas14u_CAS-V	NA|47aa|up_1|NZ_CP041452.1_1025136_1025277_-,NA	NA|434aa|up_9|NZ_CP041452.1_1015833_1017135_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP041452.1_1017182_1019417_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP041452.1_1019494_1019743_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP041452.1_1019742_1020078_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP041452.1_1020148_1020940_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP041452.1_1021167_1022805_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP041452.1_1022892_1024191_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP041452.1_1024250_1025123_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP041452.1_1025136_1025277_-	NA	NA|224aa|up_0|NZ_CP041452.1_1025415_1026087_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP041452.1_1027459_1028938_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP041452.1_1028964_1030242_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP041452.1_1030560_1031346_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP041452.1_1031415_1032870_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|NZ_CP041452.1_1032963_1034301_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP041452.1_1034278_1035058_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP041452.1_1035054_1035915_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP041452.1_1036062_1036638_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP041452.1_1036654_1036915_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP041452.1_1036905_1038177_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_008807295.1_ASM880729v1	NZ_CP041452	Escherichia coli strain YPE3 chromosome, complete genome	2	1047582-1048341	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas2	cas3,csa3,PD-DExK,WYL,cas2,DEDDh,DinG,c2c9_V-U4,Cas14u_CAS-V	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	12,12,12	12	Unclear	cas3,csa3,PD-DExK,WYL,cas2,DEDDh,DinG,c2c9_V-U4,Cas14u_CAS-V	NA,NA	NA|192aa|up_9|NZ_CP041452.1_1036062_1036638_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|up_8|NZ_CP041452.1_1036654_1036915_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|up_7|NZ_CP041452.1_1036905_1038177_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|122aa|up_6|NZ_CP041452.1_1038254_1038620_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_5|NZ_CP041452.1_1038935_1040735_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_4|NZ_CP041452.1_1040734_1042447_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_3|NZ_CP041452.1_1042520_1043255_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_2|NZ_CP041452.1_1043519_1043672_+	pfam01848, HOK_GEF, Hok/gef family	NA|371aa|up_1|NZ_CP041452.1_1043864_1044977_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	cas2|78aa|up_0|NZ_CP041452.1_1047251_1047485_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP041452.1_1048423_1049461_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP041452.1_1049712_1050621_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP041452.1_1050622_1052050_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP041452.1_1052049_1052655_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP041452.1_1052704_1053028_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP041452.1_1053221_1053533_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP041452.1_1053551_1054262_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP041452.1_1054261_1054741_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP041452.1_1054737_1055787_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP041452.1_1055767_1056529_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_008807295.1_ASM880729v1	NZ_CP041452	Escherichia coli strain YPE3 chromosome, complete genome	3	1588695-1588812	3	CRISPRCasFinder	no		cas3,csa3,PD-DExK,WYL,cas2,DEDDh,DinG,c2c9_V-U4,Cas14u_CAS-V	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,cas2,DEDDh,DinG,c2c9_V-U4,Cas14u_CAS-V	NA,NA	NA|62aa|up_9|NZ_CP041452.1_1577980_1578166_-	PRK09956, PRK09956, ISNCY family transposase	NA|300aa|up_8|NZ_CP041452.1_1578178_1579078_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP041452.1_1579270_1580461_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP041452.1_1580457_1581717_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP041452.1_1581706_1583335_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP041452.1_1583607_1584966_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP041452.1_1584970_1586047_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP041452.1_1586509_1587160_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP041452.1_1587213_1587468_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP041452.1_1587467_1588598_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP041452.1_1588831_1591117_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP041452.1_1591812_1595565_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP041452.1_1595692_1596415_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP041452.1_1596561_1599189_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP041452.1_1599337_1601026_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP041452.1_1601022_1601646_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|down_6|NZ_CP041452.1_1604157_1605807_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_7|NZ_CP041452.1_1605811_1606588_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_8|NZ_CP041452.1_1606661_1607846_-	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|441aa|down_9|NZ_CP041452.1_1607876_1609199_-	pfam02667, SCFA_trans, Short chain fatty acid transporter
GCF_008807295.1_ASM880729v1	NZ_CP041452	Escherichia coli strain YPE3 chromosome, complete genome	4	2197862-2197985	4	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,WYL,cas2,DEDDh,DinG,c2c9_V-U4,Cas14u_CAS-V	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,cas2,DEDDh,DinG,c2c9_V-U4,Cas14u_CAS-V	NA,NA|30aa|down_7|NZ_CP041452.1_2206881_2206971_+	NA|471aa|up_9|NZ_CP041452.1_2187316_2188729_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP041452.1_2189285_2189495_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP041452.1_2189949_2190576_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP041452.1_2190596_2192699_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP041452.1_2192702_2193350_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP041452.1_2193413_2194082_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP041452.1_2194078_2194864_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP041452.1_2194867_2195680_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP041452.1_2195691_2197296_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP041452.1_2197421_2197727_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP041452.1_2198299_2199556_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP041452.1_2199596_2200970_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP041452.1_2201184_2201826_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP041452.1_2201865_2203014_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP041452.1_2203304_2204516_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP041452.1_2204628_2205561_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP041452.1_2205557_2206583_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP041452.1_2206881_2206971_+	NA	NA|390aa|down_8|NZ_CP041452.1_2207136_2208306_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP041452.1_2208540_2209122_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_008807295.1_ASM880729v1	NZ_CP041452	Escherichia coli strain YPE3 chromosome, complete genome	5	2837118-2837209	5	CRISPRCasFinder	no		cas3,csa3,PD-DExK,WYL,cas2,DEDDh,DinG,c2c9_V-U4,Cas14u_CAS-V	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,cas2,DEDDh,DinG,c2c9_V-U4,Cas14u_CAS-V	NA|60aa|up_7|NZ_CP041452.1_2831276_2831456_-,NA	NA|1321aa|up_9|NZ_CP041452.1_2826457_2830420_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_8|NZ_CP041452.1_2830459_2831098_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|60aa|up_7|NZ_CP041452.1_2831276_2831456_-	NA	NA|364aa|up_6|NZ_CP041452.1_2831385_2832477_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP041452.1_2832476_2833169_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP041452.1_2833180_2833567_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP041452.1_2833574_2834375_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP041452.1_2834384_2834975_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP041452.1_2834985_2835480_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP041452.1_2835500_2836829_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP041452.1_2837632_2838229_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP041452.1_2838249_2838477_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP041452.1_2838514_2839756_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP041452.1_2840048_2841305_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP041452.1_2841565_2842486_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP041452.1_2842485_2842791_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP041452.1_2842942_2843542_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP041452.1_2843538_2846085_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP041452.1_2846084_2847257_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP041452.1_2847386_2848079_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_008807295.1_ASM880729v1	NZ_CP041452	Escherichia coli strain YPE3 chromosome, complete genome	6	3099410-3099554	6	CRISPRCasFinder	no		cas3,csa3,PD-DExK,WYL,cas2,DEDDh,DinG,c2c9_V-U4,Cas14u_CAS-V	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,cas2,DEDDh,DinG,c2c9_V-U4,Cas14u_CAS-V	NA,NA	NA|330aa|up_9|NZ_CP041452.1_3087308_3088298_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_CP041452.1_3088694_3089603_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_CP041452.1_3089794_3091816_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_CP041452.1_3092394_3093072_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_CP041452.1_3093064_3093820_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_CP041452.1_3093806_3094961_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_CP041452.1_3094957_3095998_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_CP041452.1_3096084_3097374_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_CP041452.1_3097432_3097909_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_CP041452.1_3098060_3099344_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP041452.1_3099577_3101839_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP041452.1_3102021_3103455_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP041452.1_3103530_3104583_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP041452.1_3104766_3105720_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP041452.1_3105760_3106756_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP041452.1_3106910_3107729_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP041452.1_3107729_3108788_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP041452.1_3108790_3109480_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP041452.1_3109479_3110253_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP041452.1_3110419_3110569_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_008807295.1_ASM880729v1	NZ_CP041452	Escherichia coli strain YPE3 chromosome, complete genome	7	3320468-3320564	7	CRISPRCasFinder	no		cas3,csa3,PD-DExK,WYL,cas2,DEDDh,DinG,c2c9_V-U4,Cas14u_CAS-V	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,cas2,DEDDh,DinG,c2c9_V-U4,Cas14u_CAS-V	NA,NA	NA|231aa|up_9|NZ_CP041452.1_3312263_3312956_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_CP041452.1_3313175_3313718_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_CP041452.1_3314188_3315055_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP041452.1_3315056_3315269_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP041452.1_3315376_3315898_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP041452.1_3315933_3317319_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP041452.1_3317492_3317987_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP041452.1_3317989_3318712_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP041452.1_3318829_3319339_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP041452.1_3319335_3320403_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP041452.1_3320597_3321491_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP041452.1_3321487_3322303_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|407aa|down_2|NZ_CP041452.1_3322352_3323573_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_CP041452.1_3323582_3325250_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_CP041452.1_3325566_3326616_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_CP041452.1_3326637_3327873_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_CP041452.1_3327883_3328669_+	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|382aa|down_7|NZ_CP041452.1_3328896_3330042_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_CP041452.1_3330063_3331365_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_CP041452.1_3331421_3332783_-	PRK08044, PRK08044, allantoinase AllB
GCF_008807295.1_ASM880729v1	NZ_CP041452	Escherichia coli strain YPE3 chromosome, complete genome	8	3858722-3858856	8	CRISPRCasFinder	no		cas3,csa3,PD-DExK,WYL,cas2,DEDDh,DinG,c2c9_V-U4,Cas14u_CAS-V	Orphan	GGCCTACACGCTGCGATTTTGTAGGCCGGATAAGCAAAGCGCATCCGGCA	50	1	1	3858772-3858806	NZ_CP041452.1_3921949-3921915	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,cas2,DEDDh,DinG,c2c9_V-U4,Cas14u_CAS-V	NA,NA	NA|393aa|up_9|NZ_CP041452.1_3846705_3847884_-	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter	NA|44aa|up_8|NZ_CP041452.1_3847985_3848117_-	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT	NA|552aa|up_7|NZ_CP041452.1_3848205_3849861_+	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|328aa|up_6|NZ_CP041452.1_3850024_3851008_+	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|537aa|up_5|NZ_CP041452.1_3850983_3852594_+	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|233aa|up_4|NZ_CP041452.1_3852577_3853276_+	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|255aa|up_3|NZ_CP041452.1_3853389_3854154_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|293aa|up_2|NZ_CP041452.1_3854239_3855118_-	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|567aa|up_1|NZ_CP041452.1_3855456_3857157_+	PRK04123, PRK04123, ribulokinase; Provisional	NA|501aa|up_0|NZ_CP041452.1_3857167_3858670_+	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|232aa|down_0|NZ_CP041452.1_3858869_3859565_+	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|784aa|down_1|NZ_CP041452.1_3859639_3861991_+	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|969aa|down_2|NZ_CP041452.1_3862155_3865062_+	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|220aa|down_3|NZ_CP041452.1_3865073_3865733_+	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|272aa|down_4|NZ_CP041452.1_3867256_3868072_-	PRK09430, djlA, co-chaperone DjlA	NA|785aa|down_5|NZ_CP041452.1_3868326_3870681_+	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|429aa|down_6|NZ_CP041452.1_3870733_3872020_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|330aa|down_7|NZ_CP041452.1_3872019_3873009_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|274aa|down_8|NZ_CP041452.1_3873005_3873827_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|126aa|down_9|NZ_CP041452.1_3873829_3874207_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed
GCF_008807295.1_ASM880729v1	NZ_CP041452	Escherichia coli strain YPE3 chromosome, complete genome	9	3890696-3890837	9	CRISPRCasFinder	no		cas3,csa3,PD-DExK,WYL,cas2,DEDDh,DinG,c2c9_V-U4,Cas14u_CAS-V	Orphan	GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,cas2,DEDDh,DinG,c2c9_V-U4,Cas14u_CAS-V	NA,NA	NA|96aa|up_9|NZ_CP041452.1_3879687_3879975_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_8|NZ_CP041452.1_3879971_3881258_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_7|NZ_CP041452.1_3881308_3882250_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_6|NZ_CP041452.1_3882264_3883035_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|up_5|NZ_CP041452.1_3883507_3885022_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|up_4|NZ_CP041452.1_3885052_3886195_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|up_3|NZ_CP041452.1_3886323_3887541_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|up_2|NZ_CP041452.1_3887614_3889168_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|up_1|NZ_CP041452.1_3889276_3890062_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|up_0|NZ_CP041452.1_3890067_3890658_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_0|NZ_CP041452.1_3890866_3891262_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_1|NZ_CP041452.1_3891523_3894745_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_2|NZ_CP041452.1_3894762_3895911_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_3|NZ_CP041452.1_3896366_3897188_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]	NA|305aa|down_4|NZ_CP041452.1_3897354_3898269_-	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional	NA|317aa|down_5|NZ_CP041452.1_3898334_3899285_-	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed	NA|150aa|down_6|NZ_CP041452.1_3899286_3899736_-	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional	NA|165aa|down_7|NZ_CP041452.1_3899860_3900355_-	PRK00376, lspA, lipoprotein signal peptidase	NA|939aa|down_8|NZ_CP041452.1_3900354_3903171_-	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed	NA|314aa|down_9|NZ_CP041452.1_3903213_3904155_-	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase
GCF_008807295.1_ASM880729v1	NZ_CP041453	Escherichia coli strain YPE3 plasmid pYPE3-92k-tetX4, complete sequence	1	54126-54245	1	CRISPRCasFinder	no			Orphan	TGCGTACCCATCCACCTTTCAGTGCGTACCCATCCACCTTTCA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,WYL,cas2,DEDDh,DinG,c2c9_V-U4,Cas14u_CAS-V	NA|28aa|up_7|NZ_CP041453.1_48754_48838_+,NA|94aa|up_4|NZ_CP041453.1_50777_51059_+,NA|326aa|up_3|NZ_CP041453.1_51083_52061_+,NA|119aa|up_2|NZ_CP041453.1_52057_52414_-,NA|77aa|up_0|NZ_CP041453.1_53811_54042_+,NA|86aa|down_2|NZ_CP041453.1_56546_56804_+	NA|235aa|up_9|NZ_CP041453.1_44971_45676_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|479aa|up_8|NZ_CP041453.1_45846_47283_+	pfam03917, GSH_synth_ATP, Eukaryotic glutathione synthase, ATP binding domain	NA|28aa|up_7|NZ_CP041453.1_48754_48838_+	NA	NA|215aa|up_6|NZ_CP041453.1_48992_49637_-	cd03767, SR_Res_par, Serine recombinase (SR) family, Partitioning (par)-Resolvase subfamily, catalytic domain; Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme	NA|221aa|up_5|NZ_CP041453.1_50017_50680_+	PHA02518, PHA02518, ParA-like protein; Provisional	NA|94aa|up_4|NZ_CP041453.1_50777_51059_+	NA	NA|326aa|up_3|NZ_CP041453.1_51083_52061_+	NA	NA|119aa|up_2|NZ_CP041453.1_52057_52414_-	NA	NA|279aa|up_1|NZ_CP041453.1_53036_53873_-	pfam01051, Rep_3, Initiator Replication protein	NA|77aa|up_0|NZ_CP041453.1_53811_54042_+	NA	NA|84aa|down_0|NZ_CP041453.1_55106_55358_+	PRK02854, PRK02854, primosomal protein DnaT	NA|94aa|down_1|NZ_CP041453.1_55347_55629_+	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|86aa|down_2|NZ_CP041453.1_56546_56804_+	NA	NA|308aa|down_3|NZ_CP041453.1_56840_57764_-	pfam13737, DDE_Tnp_1_5, Transposase DDE domain	NA|66aa|down_4|NZ_CP041453.1_58152_58350_-	pfam11666, DUF2933, Protein of unknown function (DUF2933)	NA|826aa|down_5|NZ_CP041453.1_58390_60868_-	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|147aa|down_6|NZ_CP041453.1_60965_61406_-	COG3019, COG3019, Predicted metal-binding protein [General function prediction only]	NA|1049aa|down_7|NZ_CP041453.1_61492_64639_-	TIGR00914, Nickel-cobalt-cadmium_resistance_protein_NccA, heavy metal efflux pump, CzcA family	NA|431aa|down_8|NZ_CP041453.1_64649_65942_-	PRK09783, PRK09783, copper/silver efflux system membrane fusion protein CusB; Provisional	NA|118aa|down_9|NZ_CP041453.1_66055_66409_-	PRK09838, PRK09838, periplasmic copper-binding protein; Provisional
