assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008807655.1_ASM880765v1	NZ_CP032145	Escherichia coli strain 15.TR.026_OXA chromosome, complete genome	1	777200-777341	1	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,DinG,cas3,cas14j,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	Orphan	GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGAAATGCAG	47	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,DinG,cas3,cas14j,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	NA|36aa|up_4|NZ_CP032145.1_773422_773530_-,NA|64aa|down_4|NZ_CP032145.1_783763_783955_-	NA|354aa|up_9|NZ_CP032145.1_766663_767725_-	pfam00419, Fimbrial, Fimbrial protein	NA|244aa|up_8|NZ_CP032145.1_767721_768453_-	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]	NA|817aa|up_7|NZ_CP032145.1_768467_770918_-	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|189aa|up_6|NZ_CP032145.1_770977_771544_-	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|428aa|up_5|NZ_CP032145.1_771933_773217_-	PRK05614, gltA, citrate synthase	NA|36aa|up_4|NZ_CP032145.1_773422_773530_-	NA	NA|130aa|up_3|NZ_CP032145.1_773925_774315_+	PRK09487, sdhC, succinate dehydrogenase cytochrome b556 subunit	NA|116aa|up_2|NZ_CP032145.1_774308_774656_+	PRK09488, sdhD, succinate dehydrogenase membrane anchor subunit	NA|589aa|up_1|NZ_CP032145.1_774655_776422_+	PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|239aa|up_0|NZ_CP032145.1_776437_777154_+	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|934aa|down_0|NZ_CP032145.1_777503_780305_+	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|406aa|down_1|NZ_CP032145.1_780319_781537_+	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|389aa|down_2|NZ_CP032145.1_781630_782797_+	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|290aa|down_3|NZ_CP032145.1_782796_783666_+	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|64aa|down_4|NZ_CP032145.1_783763_783955_-	NA	NA|49aa|down_5|NZ_CP032145.1_783914_784061_+	COG2986, HutH, Histidine ammonia-lyase [Amino acid transport and metabolism]	NA|302aa|down_6|NZ_CP032145.1_784331_785237_+	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|201aa|down_7|NZ_CP032145.1_785270_785873_-	PRK05986, PRK05986, cob(I)yrinic acid a,c-diamide adenosyltransferase	NA|427aa|down_8|NZ_CP032145.1_787642_788923_-	COG1301, GltP, Na+/H+-dicarboxylate symporters [Energy production and conversion]	NA|106aa|down_9|NZ_CP032145.1_789083_789401_-	pfam14330, DUF4387, Domain of unknown function (DUF4387)
GCF_008807655.1_ASM880765v1	NZ_CP032145	Escherichia coli strain 15.TR.026_OXA chromosome, complete genome	2	1942677-1942790	1	PILER-CR	no		DEDDh,c2c9_V-U4,DinG,cas3,cas14j,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	Orphan	TTTTTTTACCTGATTCGGGTAAA	23	0	0	NA	NA	NA	2	2	Orphan	DEDDh,c2c9_V-U4,DinG,cas3,cas14j,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	NA|34aa|up_7|NZ_CP032145.1_1936991_1937093_-,NA|50aa|up_3|NZ_CP032145.1_1940616_1940766_-,NA|101aa|up_1|NZ_CP032145.1_1941213_1941516_-,NA|94aa|down_9|NZ_CP032145.1_1947855_1948137_+	NA|57aa|up_9|NZ_CP032145.1_1936369_1936540_-	PRK09689, PRK09689, prophage protein NinE; Provisional	NA|152aa|up_8|NZ_CP032145.1_1936539_1936995_-	PRK09741, PRK09741, hypothetical protein; Provisional	NA|34aa|up_7|NZ_CP032145.1_1936991_1937093_-	NA	NA|266aa|up_6|NZ_CP032145.1_1937209_1938007_-	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|184aa|up_5|NZ_CP032145.1_1938016_1938568_-	PRK09818, PRK09818, kinase inhibitor	NA|509aa|up_4|NZ_CP032145.1_1939032_1940559_-	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain	NA|50aa|up_3|NZ_CP032145.1_1940616_1940766_-	NA	NA|111aa|up_2|NZ_CP032145.1_1940813_1941146_-	PRK09541, emrE, EmrE family multidrug efflux SMR transporter	NA|101aa|up_1|NZ_CP032145.1_1941213_1941516_-	NA	NA|234aa|up_0|NZ_CP032145.1_1941512_1942214_-	pfam06992, Phage_lambda_P, Replication protein P	NA|180aa|down_0|NZ_CP032145.1_1943226_1943766_-	pfam06254, YdaT_toxin, Putative bacterial toxin ydaT	NA|77aa|down_1|NZ_CP032145.1_1943835_1944066_-	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|230aa|down_2|NZ_CP032145.1_1944170_1944860_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|97aa|down_3|NZ_CP032145.1_1945371_1945662_+	PRK11354, kil, FtsZ inhibitor protein; Reviewed	NA|99aa|down_4|NZ_CP032145.1_1945737_1946034_+	pfam06064, Gam, Host-nuclease inhibitor protein Gam	NA|262aa|down_5|NZ_CP032145.1_1946039_1946825_+	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet	NA|227aa|down_6|NZ_CP032145.1_1946821_1947502_+	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|61aa|down_7|NZ_CP032145.1_1947498_1947681_+	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|64aa|down_8|NZ_CP032145.1_1947653_1947845_+	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|94aa|down_9|NZ_CP032145.1_1947855_1948137_+	NA
GCF_008807655.1_ASM880765v1	NZ_CP032145	Escherichia coli strain 15.TR.026_OXA chromosome, complete genome	3	2314318-2314447	2	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,DinG,cas3,cas14j,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	Orphan	CCGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACA	42	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,DinG,cas3,cas14j,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	NA,NA	NA|292aa|up_9|NZ_CP032145.1_2301473_2302349_-	PRK15480, PRK15480, glucose-1-phosphate thymidylyltransferase RfbA; Provisional	NA|300aa|up_8|NZ_CP032145.1_2302407_2303307_-	PRK09987, PRK09987, dTDP-4-dehydrorhamnose reductase; Provisional	NA|362aa|up_7|NZ_CP032145.1_2303306_2304392_-	PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional	NA|298aa|up_6|NZ_CP032145.1_2304764_2305658_-	PRK10122, PRK10122, UTP--glucose-1-phosphate uridylyltransferase GalF	NA|465aa|up_5|NZ_CP032145.1_2305832_2307227_-	PRK10123, wcaM, putative colanic acid biosynthesis protein; Provisional	NA|407aa|up_4|NZ_CP032145.1_2307237_2308458_-	TIGR04005, wcaL, colanic acid biosynthesis glycosyltransferase WcaL	NA|427aa|up_3|NZ_CP032145.1_2308454_2309735_-	TIGR04006, wcaK, colanic acid biosynthesis pyruvyl transferase WcaK	NA|493aa|up_2|NZ_CP032145.1_2309806_2311285_-	PRK10459, PRK10459, MOP flippase family protein	NA|465aa|up_1|NZ_CP032145.1_2311286_2312681_-	PRK10124, PRK10124, putative UDP-glucose lipid carrier transferase; Provisional	NA|457aa|up_0|NZ_CP032145.1_2312816_2314187_-	PRK15414, PRK15414, phosphomannomutase	NA|479aa|down_0|NZ_CP032145.1_2314467_2315904_-	PRK15460, cpsB, mannose-1-phosphate guanyltransferase; Provisional	NA|408aa|down_1|NZ_CP032145.1_2315906_2317130_-	TIGR04007, wcaI, colanic acid biosynthesis glycosyl transferase WcaI	NA|160aa|down_2|NZ_CP032145.1_2317126_2317606_-	PRK15434, PRK15434, GDP-mannose mannosyl hydrolase	NA|322aa|down_3|NZ_CP032145.1_2317608_2318574_-	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs	NA|374aa|down_4|NZ_CP032145.1_2318576_2319698_-	COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]	NA|183aa|down_5|NZ_CP032145.1_2319723_2320272_-	TIGR04008, WcaF, colanic acid biosynthesis acetyltransferase WcaF	NA|249aa|down_6|NZ_CP032145.1_2320287_2321034_-	PRK10063, PRK10063, colanic acid biosynthesis glycosyltransferase WcaE	NA|406aa|down_7|NZ_CP032145.1_2321044_2322262_-	TIGR04010, WcaD, putative colanic acid polymerase WcaD	NA|406aa|down_8|NZ_CP032145.1_2322236_2323454_-	TIGR04015, WcaC, colanic acid biosynthesis glycosyl transferase WcaC	NA|163aa|down_9|NZ_CP032145.1_2323450_2323939_-	PRK10191, PRK10191, putative acyl transferase; Provisional
GCF_008807655.1_ASM880765v1	NZ_CP032145	Escherichia coli strain 15.TR.026_OXA chromosome, complete genome	4	2684837-2684925	3	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,DinG,cas3,cas14j,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	Orphan	CGTTGGACAACCGTTGGACAATC	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,DinG,cas3,cas14j,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	NA|71aa|up_7|NZ_CP032145.1_2680951_2681164_-,NA|113aa|up_2|NZ_CP032145.1_2682274_2682613_-,NA|69aa|up_1|NZ_CP032145.1_2682721_2682928_-,NA|157aa|down_4|NZ_CP032145.1_2687631_2688102_+,NA|103aa|down_8|NZ_CP032145.1_2689591_2689900_+	NA|121aa|up_9|NZ_CP032145.1_2680309_2680672_-	PRK09786, PRK09786, endodeoxyribonuclease RUS; Reviewed	NA|97aa|up_8|NZ_CP032145.1_2680668_2680959_-	pfam07102, DUF1364, Protein of unknown function (DUF1364)	NA|71aa|up_7|NZ_CP032145.1_2680951_2681164_-	NA	NA|59aa|up_6|NZ_CP032145.1_2681156_2681333_-	pfam05810, NinF, NinF protein	NA|118aa|up_5|NZ_CP032145.1_2681332_2681686_-	pfam10765, DUF2591, Protein of unknown function (DUF2591)	NA|59aa|up_4|NZ_CP032145.1_2681688_2681865_-	pfam05322, NinE, NINE Protein	NA|137aa|up_3|NZ_CP032145.1_2681861_2682272_-	pfam05772, NinB, NinB protein	NA|113aa|up_2|NZ_CP032145.1_2682274_2682613_-	NA	NA|69aa|up_1|NZ_CP032145.1_2682721_2682928_-	NA	NA|479aa|up_0|NZ_CP032145.1_2683003_2684440_-	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily	NA|98aa|down_0|NZ_CP032145.1_2685500_2685794_-	pfam05269, Phage_CII, Bacteriophage CII protein	NA|72aa|down_1|NZ_CP032145.1_2685913_2686129_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|232aa|down_2|NZ_CP032145.1_2686204_2686900_+	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	NA|126aa|down_3|NZ_CP032145.1_2687245_2687623_+	pfam11438, N36, 36-mer N-terminal peptide of the N protein (N36)	NA|157aa|down_4|NZ_CP032145.1_2687631_2688102_+	NA	NA|323aa|down_5|NZ_CP032145.1_2688245_2689214_+	PTZ00121, PTZ00121, MAEBL; Provisional	NA|44aa|down_6|NZ_CP032145.1_2689238_2689370_+	pfam02061, Lambda_CIII, Lambda Phage CIII	NA|51aa|down_7|NZ_CP032145.1_2689354_2689507_+	pfam06301, Lambda_Kil, Bacteriophage lambda Kil protein	NA|103aa|down_8|NZ_CP032145.1_2689591_2689900_+	NA	NA|304aa|down_9|NZ_CP032145.1_2689896_2690808_+	pfam03837, RecT, RecT family
GCF_008807655.1_ASM880765v1	NZ_CP032145	Escherichia coli strain 15.TR.026_OXA chromosome, complete genome	5	3106007-3106523	2,4,1	PILER-CR,CRISPRCasFinder,CRT	no	cas2	DEDDh,c2c9_V-U4,DinG,cas3,cas14j,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	Unclear	CGGTTTATCCCCGCTGACGCGGGGAACAC,CGGTTTATCCCCGCTGACGCGGGGAACAC,CGGTTTATCCCCGCTGNCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,8,8	8	Unclear	DEDDh,c2c9_V-U4,DinG,cas3,cas14j,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	NA,NA|64aa|down_5|NZ_CP032145.1_3111805_3111997_-,NA|82aa|down_6|NZ_CP032145.1_3112002_3112248_+	NA|254aa|up_9|NZ_CP032145.1_3097819_3098581_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP032145.1_3098561_3099611_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP032145.1_3099607_3100087_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP032145.1_3100086_3100797_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP032145.1_3100815_3101127_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP032145.1_3101320_3101644_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP032145.1_3101693_3102299_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP032145.1_3102298_3103726_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP032145.1_3103727_3104636_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP032145.1_3104887_3105925_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP032145.1_3106619_3106913_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|235aa|down_1|NZ_CP032145.1_3107035_3107740_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|307aa|down_2|NZ_CP032145.1_3107773_3108694_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|287aa|down_3|NZ_CP032145.1_3109908_3110769_+	pfam02522, Antibiotic_NAT, Aminoglycoside 3-N-acetyltransferase	NA|181aa|down_4|NZ_CP032145.1_3110781_3111324_+	pfam13238, AAA_18, AAA domain	NA|64aa|down_5|NZ_CP032145.1_3111805_3111997_-	NA	NA|82aa|down_6|NZ_CP032145.1_3112002_3112248_+	NA	NA|376aa|down_7|NZ_CP032145.1_3112298_3113426_+	pfam13020, DUF3883, Domain of unknown function (DUF3883)	NA|235aa|down_8|NZ_CP032145.1_3113462_3114167_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|down_9|NZ_CP032145.1_3114288_3115194_+	cd05152, MPH2', Macrolide 2'-Phosphotransferase
GCF_008807655.1_ASM880765v1	NZ_CP032145	Escherichia coli strain 15.TR.026_OXA chromosome, complete genome	6	3171724-3172728	5,2,3	CRISPRCasFinder,CRT,PILER-CR	no		DEDDh,c2c9_V-U4,DinG,cas3,cas14j,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	Orphan	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	16,16,15	16	Orphan	DEDDh,c2c9_V-U4,DinG,cas3,cas14j,RT,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL	NA,NA	NA|87aa|up_9|NZ_CP032145.1_3160195_3160456_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_8|NZ_CP032145.1_3160472_3161048_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|450aa|up_7|NZ_CP032145.1_3161182_3162531_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|287aa|up_6|NZ_CP032145.1_3162630_3163491_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_5|NZ_CP032145.1_3163487_3164267_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|446aa|up_4|NZ_CP032145.1_3164244_3165582_-	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|485aa|up_3|NZ_CP032145.1_3165675_3167130_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP032145.1_3167199_3167985_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP032145.1_3168303_3169581_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP032145.1_3169607_3171086_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP032145.1_3173066_3173738_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|291aa|down_1|NZ_CP032145.1_3174031_3174904_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_2|NZ_CP032145.1_3174963_3176262_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_3|NZ_CP032145.1_3176349_3177987_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_4|NZ_CP032145.1_3178214_3179006_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_5|NZ_CP032145.1_3179077_3179413_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_6|NZ_CP032145.1_3179412_3179661_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_7|NZ_CP032145.1_3179738_3181973_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_8|NZ_CP032145.1_3182020_3183322_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|919aa|down_9|NZ_CP032145.1_3183378_3186135_+	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional
