assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008807875.1_ASM880787v1	NZ_CP032668	Listeria monocytogenes strain 52873 chromosome, complete genome	1	203431-203582	1	CRISPRCasFinder	no		csa3,DinG,WYL,casR,cas3,DEDDh,csn2,cas2,cas1,cas9	Orphan	CCACCACCTAGGGATGAAGAGTTAAGACTTGCTTTGCCAGAGACACC	47	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,WYL,casR,cas3,DEDDh,csn2,cas2,cas1,cas9	NA,NA	NA|231aa|up_9|NZ_CP032668.1_190683_191376_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|403aa|up_8|NZ_CP032668.1_191372_192581_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|103aa|up_7|NZ_CP032668.1_193267_193576_+	PRK13259, PRK13259, septation regulator SpoVG	NA|103aa|up_6|NZ_CP032668.1_193694_194003_+	PRK13259, PRK13259, septation regulator SpoVG	NA|458aa|up_5|NZ_CP032668.1_194390_195764_+	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA|319aa|up_4|NZ_CP032668.1_195814_196771_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|238aa|up_3|NZ_CP032668.1_196809_197523_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|318aa|up_2|NZ_CP032668.1_197795_198749_-	cd00137, PI-PLCc, Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C	NA|530aa|up_1|NZ_CP032668.1_198990_200580_+	pfam01289, Thiol_cytolysin, Thiol-activated cytolysin	NA|511aa|up_0|NZ_CP032668.1_200901_202434_+	COG3227, LasB, Zinc metalloprotease (elastase) [Amino acid transport and metabolism]	NA|290aa|down_0|NZ_CP032668.1_204588_205458_+	smart00770, Zn_dep_PLPC, Zinc dependent phospholipase C (alpha toxin)	NA|108aa|down_1|NZ_CP032668.1_205529_205853_+	pfam17606, DUF5502, Family of unknown function (DUF5502)	NA|152aa|down_2|NZ_CP032668.1_205988_206444_+	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown]	NA|111aa|down_3|NZ_CP032668.1_206494_206827_-	PRK01119, PRK01119, putative heavy metal-binding protein	NA|225aa|down_4|NZ_CP032668.1_206892_207567_-	pfam08713, DNA_alkylation, DNA alkylation repair enzyme	NA|314aa|down_5|NZ_CP032668.1_207643_208585_-	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|208aa|down_6|NZ_CP032668.1_208878_209502_+	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed	NA|195aa|down_7|NZ_CP032668.1_209591_210176_+	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|187aa|down_8|NZ_CP032668.1_210282_210843_+	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	NA|1180aa|down_9|NZ_CP032668.1_210957_214497_+	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
GCF_008807875.1_ASM880787v1	NZ_CP032668	Listeria monocytogenes strain 52873 chromosome, complete genome	2	507948-508532	1	CRT	no		csa3,DinG,WYL,casR,cas3,DEDDh,csn2,cas2,cas1,cas9	Orphan	GATGTAAGTAATTTTGATACNAGTTCAGTAACTNATATG	39	0	0	NA	NA	NA	7	7	Orphan	csa3,DinG,WYL,casR,cas3,DEDDh,csn2,cas2,cas1,cas9	NA|171aa|up_3|NZ_CP032668.1_500430_500943_+,NA|158aa|down_0|NZ_CP032668.1_509425_509899_+,NA|162aa|down_1|NZ_CP032668.1_509918_510404_+,NA|89aa|down_3|NZ_CP032668.1_510812_511079_+,NA|61aa|down_5|NZ_CP032668.1_512581_512764_+,NA|276aa|down_6|NZ_CP032668.1_512885_513713_+,NA|82aa|down_9|NZ_CP032668.1_514902_515148_+	NA|383aa|up_9|NZ_CP032668.1_492077_493226_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|316aa|up_8|NZ_CP032668.1_493230_494178_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|532aa|up_7|NZ_CP032668.1_494334_495930_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|428aa|up_6|NZ_CP032668.1_496064_497348_+	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain	NA|367aa|up_5|NZ_CP032668.1_497348_498449_+	COG3535, COG3535, Uncharacterized conserved protein [Function unknown]	NA|517aa|up_4|NZ_CP032668.1_498441_499992_+	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|171aa|up_3|NZ_CP032668.1_500430_500943_+	NA	NA|436aa|up_2|NZ_CP032668.1_500939_502247_+	PRK11204, PRK11204, N-glycosyltransferase; Provisional	NA|513aa|up_1|NZ_CP032668.1_502981_504520_+	pfam05043, Mga, Mga helix-turn-helix domain	NA|679aa|up_0|NZ_CP032668.1_505118_507155_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|158aa|down_0|NZ_CP032668.1_509425_509899_+	NA	NA|162aa|down_1|NZ_CP032668.1_509918_510404_+	NA	NA|102aa|down_2|NZ_CP032668.1_510431_510737_+	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|89aa|down_3|NZ_CP032668.1_510812_511079_+	NA	NA|321aa|down_4|NZ_CP032668.1_511158_512121_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|61aa|down_5|NZ_CP032668.1_512581_512764_+	NA	NA|276aa|down_6|NZ_CP032668.1_512885_513713_+	NA	NA|126aa|down_7|NZ_CP032668.1_513740_514118_+	pfam11337, DUF3139, Protein of unknown function (DUF3139)	NA|120aa|down_8|NZ_CP032668.1_514417_514777_+	pfam11337, DUF3139, Protein of unknown function (DUF3139)	NA|82aa|down_9|NZ_CP032668.1_514902_515148_+	NA
GCF_008807875.1_ASM880787v1	NZ_CP032668	Listeria monocytogenes strain 52873 chromosome, complete genome	3	540120-540405	1,2	PILER-CR,CRISPRCasFinder	no		csa3,DinG,WYL,casR,cas3,DEDDh,csn2,cas2,cas1,cas9	Orphan	GTTTTAGTTACTTAATGTGAAATGTAAAT,GTTTTAGTTACTTAATGTGAAATGTAAAT	29,29	0	0	NA	NA	I-A:I-A	3,4	4	Orphan	csa3,DinG,WYL,casR,cas3,DEDDh,csn2,cas2,cas1,cas9	NA|133aa|up_5|NZ_CP032668.1_535109_535508_+,NA|214aa|down_0|NZ_CP032668.1_540482_541124_-	NA|217aa|up_9|NZ_CP032668.1_531172_531823_+	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism]	NA|687aa|up_8|NZ_CP032668.1_531931_533992_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|201aa|up_7|NZ_CP032668.1_533995_534598_+	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]	NA|156aa|up_6|NZ_CP032668.1_534625_535093_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|133aa|up_5|NZ_CP032668.1_535109_535508_+	NA	NA|217aa|up_4|NZ_CP032668.1_535518_536169_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|349aa|up_3|NZ_CP032668.1_536165_537212_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|98aa|up_2|NZ_CP032668.1_537227_537521_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|424aa|up_1|NZ_CP032668.1_537535_538807_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|312aa|up_0|NZ_CP032668.1_538946_539882_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|214aa|down_0|NZ_CP032668.1_540482_541124_-	NA	NA|179aa|down_1|NZ_CP032668.1_541134_541671_-	cd11375, Peptidase_M54, Peptidase family M54, also called archaemetzincins or archaelysins	NA|227aa|down_2|NZ_CP032668.1_541894_542575_+	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|120aa|down_3|NZ_CP032668.1_542599_542959_-	TIGR02058, lin0512_fam, conserved hypothetical protein	NA|153aa|down_4|NZ_CP032668.1_542965_543424_-	COG1846, MarR, Transcriptional regulators [Transcription]	NA|611aa|down_5|NZ_CP032668.1_543804_545637_+	NF033186, internalin_K, class 1 internalin InlK	NA|144aa|down_6|NZ_CP032668.1_545737_546169_+	pfam00582, Usp, Universal stress protein family	NA|477aa|down_7|NZ_CP032668.1_546215_547646_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|down_8|NZ_CP032668.1_547766_548582_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|123aa|down_9|NZ_CP032668.1_548862_549231_-	COG3759, COG3759, Predicted membrane protein [Function unknown]
GCF_008807875.1_ASM880787v1	NZ_CP032668	Listeria monocytogenes strain 52873 chromosome, complete genome	4	2667383-2669066	3,2,2	CRISPRCasFinder,CRT,PILER-CR	no	csn2,cas2,cas1,cas9	csa3,DinG,WYL,casR,cas3,DEDDh,csn2,cas2,cas1,cas9	Type II-A,Type II-B,Type II-C	GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC,GTTTTGGTAGCATTCAAAATAACATAGCTCTAAAAC	36,36,36	0	0	NA	NA	II-A,II-B:II-A,II-B:II-A,II-B	25,25,12	25	TypeII-A,TypeII-B,TypeII-C	csa3,DinG,WYL,casR,cas3,DEDDh,csn2,cas2,cas1,cas9	NA|121aa|up_0|NZ_CP032668.1_2666483_2666846_-,NA|160aa|down_4|NZ_CP032668.1_2675565_2676045_-	NA|159aa|up_9|NZ_CP032668.1_2649085_2649562_-	COG2427, COG2427, Uncharacterized conserved protein [Function unknown]	NA|996aa|up_8|NZ_CP032668.1_2649561_2652549_-	COG3383, COG3383, Uncharacterized anaerobic dehydrogenase [General function prediction only]	NA|281aa|up_7|NZ_CP032668.1_2653046_2653889_+	COG1912, COG1912, Uncharacterized conserved protein [Function unknown]	NA|494aa|up_6|NZ_CP032668.1_2653938_2655420_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|296aa|up_5|NZ_CP032668.1_2655520_2656408_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|343aa|up_4|NZ_CP032668.1_2662200_2663229_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|509aa|up_3|NZ_CP032668.1_2663497_2665024_+	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|284aa|up_2|NZ_CP032668.1_2665066_2665918_-	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR)	NA|141aa|up_1|NZ_CP032668.1_2665939_2666362_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|121aa|up_0|NZ_CP032668.1_2666483_2666846_-	NA	csn2|221aa|down_0|NZ_CP032668.1_2669194_2669857_-	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	cas2|114aa|down_1|NZ_CP032668.1_2669846_2670188_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|289aa|down_2|NZ_CP032668.1_2670184_2671051_-	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas9|1335aa|down_3|NZ_CP032668.1_2671051_2675056_-	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	NA|160aa|down_4|NZ_CP032668.1_2675565_2676045_-	NA	NA|131aa|down_5|NZ_CP032668.1_2676265_2676658_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_6|NZ_CP032668.1_2676679_2677117_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|249aa|down_7|NZ_CP032668.1_2677311_2678058_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|266aa|down_8|NZ_CP032668.1_2678063_2678861_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|289aa|down_9|NZ_CP032668.1_2678863_2679730_-	PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional
GCF_008807875.1_ASM880787v1	NZ_CP032668	Listeria monocytogenes strain 52873 chromosome, complete genome	5	2775146-2775255	4	CRISPRCasFinder	no		csa3,DinG,WYL,casR,cas3,DEDDh,csn2,cas2,cas1,cas9	Orphan	AGCGATGATTTAATCCTTCCCAGAAGTTTCAAA	33	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,WYL,casR,cas3,DEDDh,csn2,cas2,cas1,cas9	NA,NA|74aa|down_2|NZ_CP032668.1_2776021_2776243_-,NA|52aa|down_4|NZ_CP032668.1_2778184_2778340_+,NA|214aa|down_5|NZ_CP032668.1_2779038_2779680_-	NA|330aa|up_9|NZ_CP032668.1_2767059_2768049_+	PRK14481, PRK14481, dihydroxyacetone kinase subunit DhaK; Provisional	NA|199aa|up_8|NZ_CP032668.1_2768070_2768667_+	TIGR02365, dha_L_ycgS, dihydroxyacetone kinase, phosphoprotein-dependent, L subunit	NA|125aa|up_7|NZ_CP032668.1_2768670_2769045_+	PRK14484, PRK14484, phosphotransferase mannnose-specific family component IIA; Provisional	NA|284aa|up_6|NZ_CP032668.1_2769149_2770001_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|280aa|up_5|NZ_CP032668.1_2770119_2770959_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|281aa|up_4|NZ_CP032668.1_2771088_2771931_+	COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]	NA|82aa|up_3|NZ_CP032668.1_2771976_2772222_-	pfam10704, DUF2508, Protein of unknown function (DUF2508)	NA|199aa|up_2|NZ_CP032668.1_2772236_2772833_-	PRK00076, recR, recombination protein RecR; Reviewed	NA|106aa|up_1|NZ_CP032668.1_2772942_2773260_-	PRK00153, PRK00153, YbaB/EbfC family nucleoid-associated protein	NA|581aa|up_0|NZ_CP032668.1_2773289_2775032_-	PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated	NA|155aa|down_0|NZ_CP032668.1_2775354_2775819_-	pfam11687, DUF3284, Domain of unknown function (DUF3284)	NA|61aa|down_1|NZ_CP032668.1_2775836_2776019_-	pfam11384, DUF3188, Protein of unknown function (DUF3188)	NA|74aa|down_2|NZ_CP032668.1_2776021_2776243_-	NA	NA|455aa|down_3|NZ_CP032668.1_2776377_2777742_-	COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]	NA|52aa|down_4|NZ_CP032668.1_2778184_2778340_+	NA	NA|214aa|down_5|NZ_CP032668.1_2779038_2779680_-	NA	NA|505aa|down_6|NZ_CP032668.1_2780376_2781891_-	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|313aa|down_7|NZ_CP032668.1_2782005_2782944_-	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown]	NA|316aa|down_8|NZ_CP032668.1_2782986_2783934_-	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|580aa|down_9|NZ_CP032668.1_2784077_2785817_-	COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
