assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008807935.1_ASM880793v1	NZ_CP032671	Listeria monocytogenes strain 52859 chromosome, complete genome	1	214854-215008	1	CRISPRCasFinder	no	cas3	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,RT,DEDDh	Unclear	TTTCCACCACCACCTACGGATGAAGAGTTAAGACTTGCTTTGCCAGAGAC	50	0	0	NA	NA	NA	1	1	Unclear	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,RT,DEDDh	NA,NA	NA|231aa|up_9|NZ_CP032671.1_202095_202788_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|403aa|up_8|NZ_CP032671.1_202784_203993_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|103aa|up_7|NZ_CP032671.1_204677_204986_+	PRK13259, PRK13259, septation regulator SpoVG	NA|103aa|up_6|NZ_CP032671.1_205104_205413_+	PRK13259, PRK13259, septation regulator SpoVG	NA|458aa|up_5|NZ_CP032671.1_205799_207173_+	PRK14354, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA|319aa|up_4|NZ_CP032671.1_207223_208180_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|238aa|up_3|NZ_CP032671.1_208223_208937_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|318aa|up_2|NZ_CP032671.1_209209_210163_-	cd00137, PI-PLCc, Catalytic domain of prokaryotic and eukaryotic phosphoinositide-specific phospholipase C	NA|530aa|up_1|NZ_CP032671.1_210405_211995_+	pfam01289, Thiol_cytolysin, Thiol-activated cytolysin	NA|511aa|up_0|NZ_CP032671.1_212329_213862_+	COG3227, LasB, Zinc metalloprotease (elastase) [Amino acid transport and metabolism]	NA|290aa|down_0|NZ_CP032671.1_216016_216886_+	smart00770, Zn_dep_PLPC, Zinc dependent phospholipase C (alpha toxin)	NA|108aa|down_1|NZ_CP032671.1_216957_217281_+	pfam17606, DUF5502, Family of unknown function (DUF5502)	NA|154aa|down_2|NZ_CP032671.1_217413_217875_+	COG4808, COG4808, Uncharacterized protein conserved in bacteria [Function unknown]	NA|111aa|down_3|NZ_CP032671.1_217927_218260_-	PRK01119, PRK01119, putative heavy metal-binding protein	NA|244aa|down_4|NZ_CP032671.1_218326_219058_-	pfam08713, DNA_alkylation, DNA alkylation repair enzyme	NA|314aa|down_5|NZ_CP032671.1_219078_220020_-	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|208aa|down_6|NZ_CP032671.1_220313_220937_+	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed	NA|195aa|down_7|NZ_CP032671.1_221026_221611_+	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|187aa|down_8|NZ_CP032671.1_221717_222278_+	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	cas3|1180aa|down_9|NZ_CP032671.1_222391_225931_+	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
GCF_008807935.1_ASM880793v1	NZ_CP032671	Listeria monocytogenes strain 52859 chromosome, complete genome	2	512599-513183	1	CRT	no		csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,RT,DEDDh	Orphan	GATGTAAGTAATTTTGATACNAGTTCAGTAACTNATATG	39	0	0	NA	NA	NA	7	7	Orphan	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,RT,DEDDh	NA,NA|158aa|down_1|NZ_CP032671.1_515971_516445_+,NA|162aa|down_2|NZ_CP032671.1_516464_516950_+,NA|89aa|down_4|NZ_CP032671.1_517358_517625_+,NA|61aa|down_6|NZ_CP032671.1_519124_519307_+	NA|252aa|up_9|NZ_CP032671.1_496344_497100_-	pfam16160, DUF4866, Domain of unknown function (DUF4866)	NA|720aa|up_8|NZ_CP032671.1_497216_499376_-	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|383aa|up_7|NZ_CP032671.1_499372_500521_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|316aa|up_6|NZ_CP032671.1_500525_501473_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|532aa|up_5|NZ_CP032671.1_501628_503224_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|428aa|up_4|NZ_CP032671.1_503357_504641_+	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain	NA|367aa|up_3|NZ_CP032671.1_504641_505742_+	COG3535, COG3535, Uncharacterized conserved protein [Function unknown]	NA|517aa|up_2|NZ_CP032671.1_505734_507285_+	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|513aa|up_1|NZ_CP032671.1_507919_509458_+	pfam05043, Mga, Mga helix-turn-helix domain	NA|695aa|up_0|NZ_CP032671.1_509721_511806_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|587aa|down_0|NZ_CP032671.1_514145_515906_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|158aa|down_1|NZ_CP032671.1_515971_516445_+	NA	NA|162aa|down_2|NZ_CP032671.1_516464_516950_+	NA	NA|102aa|down_3|NZ_CP032671.1_516977_517283_+	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|89aa|down_4|NZ_CP032671.1_517358_517625_+	NA	NA|321aa|down_5|NZ_CP032671.1_517704_518667_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|61aa|down_6|NZ_CP032671.1_519124_519307_+	NA	NA|276aa|down_7|NZ_CP032671.1_519428_520256_+	pfam05708, Peptidase_C92, Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family	NA|120aa|down_8|NZ_CP032671.1_520283_520643_+	pfam11337, DUF3139, Protein of unknown function (DUF3139)	NA|187aa|down_9|NZ_CP032671.1_520968_521529_+	pfam14278, TetR_C_8, Transcriptional regulator C-terminal region
GCF_008807935.1_ASM880793v1	NZ_CP032671	Listeria monocytogenes strain 52859 chromosome, complete genome	3	566705-568354	1,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas8b2,cas7,cas5,cas3,cas2	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,RT,DEDDh	Unclear	GTTTTAACTACTTATTATGAAATGTAAAT,GTTTTAACTACTTATTATGAAATGTAAAT,GTTTTAACTACTTATTATGAAATGTAAAT	29,29,29	2	2	567060-567095|567319-567355	NZ_CP032671.1_731665-731630|NZ_CP032671.1_730864-730828	I-A:I-A:I-A	24,25,25	25	Unclear	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,RT,DEDDh	NA,NA	NA|610aa|up_9|NZ_CP032671.1_554496_556326_+	NF033186, internalin_K, class 1 internalin InlK	NA|144aa|up_8|NZ_CP032671.1_556426_556858_+	pfam00582, Usp, Universal stress protein family	NA|477aa|up_7|NZ_CP032671.1_556904_558335_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|up_6|NZ_CP032671.1_558455_559271_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	cas6|241aa|up_5|NZ_CP032671.1_559623_560346_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b2|563aa|up_4|NZ_CP032671.1_560361_562050_+	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|290aa|up_3|NZ_CP032671.1_562039_562909_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|261aa|up_2|NZ_CP032671.1_562886_563669_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|730aa|up_1|NZ_CP032671.1_563736_565926_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas2|93aa|up_0|NZ_CP032671.1_566228_566507_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|123aa|down_0|NZ_CP032671.1_568426_568795_-	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|472aa|down_1|NZ_CP032671.1_568941_570357_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|335aa|down_2|NZ_CP032671.1_570487_571492_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|996aa|down_3|NZ_CP032671.1_571769_574757_+	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	NA|530aa|down_4|NZ_CP032671.1_574804_576394_+	pfam02384, N6_Mtase, N-6 DNA Methylase	NA|402aa|down_5|NZ_CP032671.1_576390_577596_+	COG0732, HsdS, Restriction endonuclease S subunits [Defense mechanisms]	NA|310aa|down_6|NZ_CP032671.1_577680_578610_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|400aa|down_7|NZ_CP032671.1_578649_579849_-	COG0732, HsdS, Restriction endonuclease S subunits [Defense mechanisms]	NA|439aa|down_8|NZ_CP032671.1_579895_581212_-	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase	NA|251aa|down_9|NZ_CP032671.1_581413_582166_+	COG1737, RpiR, Transcriptional regulators [Transcription]
GCF_008807935.1_ASM880793v1	NZ_CP032671	Listeria monocytogenes strain 52859 chromosome, complete genome	4	2215442-2216018	3,2	CRT,PILER-CR	no		csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,RT,DEDDh	Orphan	GAACTCGTATCAAAATTACTTANATCNANNT,CATATTAGTTACGGAACTCGTATCAAAATTACTTACATCCAATTTCTCAAGTG	31,53	0	0	NA	NA	NA:NA	7,3	7	Orphan	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,RT,DEDDh	NA|89aa|up_3|NZ_CP032671.1_2212882_2213149_-,NA|162aa|up_1|NZ_CP032671.1_2213556_2214042_-,NA|158aa|up_0|NZ_CP032671.1_2214061_2214535_-,NA	NA|176aa|up_9|NZ_CP032671.1_2206778_2207306_-	pfam05103, DivIVA, DivIVA protein	NA|174aa|up_8|NZ_CP032671.1_2207401_2207923_-	COG1827, COG1827, Predicted small molecule binding protein (contains 3H domain) [General function prediction only]	NA|369aa|up_7|NZ_CP032671.1_2207927_2209034_-	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]	NA|485aa|up_6|NZ_CP032671.1_2209165_2210620_+	PRK08071, PRK08071, L-aspartate oxidase; Provisional	NA|282aa|up_5|NZ_CP032671.1_2210616_2211462_+	PRK08072, PRK08072, carboxylating nicotinate-nucleotide diphosphorylase	NA|367aa|up_4|NZ_CP032671.1_2211458_2212559_+	PRK09375, PRK09375, quinolinate synthase NadA	NA|89aa|up_3|NZ_CP032671.1_2212882_2213149_-	NA	NA|102aa|up_2|NZ_CP032671.1_2213223_2213529_-	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|162aa|up_1|NZ_CP032671.1_2213556_2214042_-	NA	NA|158aa|up_0|NZ_CP032671.1_2214061_2214535_-	NA	NA|665aa|down_0|NZ_CP032671.1_2216888_2218883_-	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|513aa|down_1|NZ_CP032671.1_2219145_2220684_-	pfam05043, Mga, Mga helix-turn-helix domain	NA|260aa|down_2|NZ_CP032671.1_2220705_2221485_-	pfam13847, Methyltransf_31, Methyltransferase domain	NA|198aa|down_3|NZ_CP032671.1_2221512_2222106_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|259aa|down_4|NZ_CP032671.1_2223291_2224068_-	COG2302, COG2302, Uncharacterized conserved protein, contains S4-like domain [Function unknown]	NA|97aa|down_5|NZ_CP032671.1_2224192_2224483_-	pfam02325, YGGT, YGGT family	NA|153aa|down_6|NZ_CP032671.1_2224505_2224964_-	COG1799, COG1799, Uncharacterized protein conserved in bacteria [Function unknown]	NA|230aa|down_7|NZ_CP032671.1_2224967_2225657_-	COG0325, COG0325, Predicted enzyme with a TIM-barrel fold [General function prediction only]	NA|392aa|down_8|NZ_CP032671.1_2225775_2226951_-	PRK09330, PRK09330, cell division protein FtsZ; Validated	NA|427aa|down_9|NZ_CP032671.1_2227017_2228298_-	COG0849, ftsA, Cell division ATPase FtsA [Cell division and chromosome partitioning]
