assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008843145.1_ASM884314v1	NZ_CP030265	Skermanella sp. W17 chromosome, complete genome	1	1325890-1326317	1,1	PILER-CR,CRT	no		RT,csa3,cas2,cas4,cas3,cas7b,cas8c,cas5,DEDDh,DinG	Orphan	GTCGCCTCCCGTGCGGGGGCGTGGATTGAAA,GTCGCCTCCCGTGCGGGGGCGTGGATTGAAAN	31,32	0	0	NA	NA	I-C:I-C	6,6	6	Orphan	RT,csa3,cas2,cas4,cas3,cas7b,cas8c,cas5,DEDDh,DinG	NA|77aa|up_4|NZ_CP030265.1_1318018_1318249_+,NA|154aa|up_2|NZ_CP030265.1_1320815_1321277_+,NA|164aa|down_4|NZ_CP030265.1_1330571_1331063_-,NA|230aa|down_6|NZ_CP030265.1_1331845_1332535_-	NA|284aa|up_9|NZ_CP030265.1_1312217_1313069_+	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|359aa|up_8|NZ_CP030265.1_1313096_1314173_+	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA|363aa|up_7|NZ_CP030265.1_1314179_1315268_+	cd03316, MR_like, Mandelate racemase (MR)-like subfamily of the enolase superfamily	NA|408aa|up_6|NZ_CP030265.1_1315334_1316558_+	TIGR03916, hypothetical_protein, putative DNA modification/repair radical SAM protein	NA|470aa|up_5|NZ_CP030265.1_1316565_1317975_+	TIGR03914, SPO1_DNA_polymerase-related_protein, uracil-DNA glycosylase family domain	NA|77aa|up_4|NZ_CP030265.1_1318018_1318249_+	NA	NA|242aa|up_3|NZ_CP030265.1_1318597_1319323_+	COG1183, PssA, Phosphatidylserine synthase [Lipid metabolism]	NA|154aa|up_2|NZ_CP030265.1_1320815_1321277_+	NA	NA|1035aa|up_1|NZ_CP030265.1_1321356_1324461_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|373aa|up_0|NZ_CP030265.1_1324457_1325576_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|109aa|down_0|NZ_CP030265.1_1326460_1326787_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|74aa|down_1|NZ_CP030265.1_1326773_1326995_-	pfam11455, DUF3018, Protein of unknown function (DUF3018)	NA|600aa|down_2|NZ_CP030265.1_1327195_1328995_-	PRK13017, PRK13017, dihydroxy-acid dehydratase; Provisional	NA|419aa|down_3|NZ_CP030265.1_1329285_1330542_+	pfam00563, EAL, EAL domain	NA|164aa|down_4|NZ_CP030265.1_1330571_1331063_-	NA	NA|200aa|down_5|NZ_CP030265.1_1331119_1331719_-	cd00737, lyz_endolysin_autolysin, endolysin and autolysin	NA|230aa|down_6|NZ_CP030265.1_1331845_1332535_-	NA	NA|394aa|down_7|NZ_CP030265.1_1332722_1333904_-	pfam04230, PS_pyruv_trans, Polysaccharide pyruvyl transferase	NA|455aa|down_8|NZ_CP030265.1_1333956_1335321_-	cd03823, GT4_ExpE7-like, glycosyltransferase ExpE7 and similar proteins	NA|730aa|down_9|NZ_CP030265.1_1335317_1337507_-	cd04186, GT_2_like_c, Subfamily of Glycosyltransferase Family GT2 of unknown function
GCF_008843145.1_ASM884314v1	NZ_CP030265	Skermanella sp. W17 chromosome, complete genome	2	1782014-1786360	2,1,2	CRT,CRISPRCasFinder,PILER-CR	no	cas2,cas4,cas3,cas7b,cas8c,cas5	RT,csa3,cas2,cas4,cas3,cas7b,cas8c,cas5,DEDDh,DinG	Type I-U, Type I-U?,Type I-C	AGTTTCAATCCACGCCCCCGCACGGGGGGCGAC,GTTTCAATCCACGCCCCCGCACGGGGGGCGAC,GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC	33,32,32	3	3	1785358-1785391|1785424-1785462|1785368-1785401	NZ_CP030265.1_1256991-1257024|NZ_CP030265.1_1295444-1295482|NZ_CP030265.1_1256991-1257024	I-C:I-C:I-C	65,64,60	65	TypeI-U,TypeI-U?,TypeI-C	RT,csa3,cas2,cas4,cas3,cas7b,cas8c,cas5,DEDDh,DinG	NA|138aa|up_9|NZ_CP030265.1_1772574_1772988_-,cas8c|711aa|down_4|NZ_CP030265.1_1791686_1793819_-	NA|138aa|up_9|NZ_CP030265.1_1772574_1772988_-	NA	NA|162aa|up_8|NZ_CP030265.1_1773141_1773627_+	PRK05412, PRK05412, putative nucleotide-binding protein; Reviewed	NA|263aa|up_7|NZ_CP030265.1_1773646_1774435_-	cd00144, MPP_PPP_family, phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain	NA|305aa|up_6|NZ_CP030265.1_1774659_1775574_+	smart00880, CHAD, The CHAD domain is an alpha-helical domain functionally associated with some members of the adenylate cyclase family	NA|256aa|up_5|NZ_CP030265.1_1775596_1776364_-	PRK10906, PRK10906, DeoR/GlpR family transcriptional regulator	NA|226aa|up_4|NZ_CP030265.1_1776360_1777038_-	pfam08362, TetR_C_3, YcdC-like protein, C-terminal region	NA|450aa|up_3|NZ_CP030265.1_1777238_1778588_+	PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional	NA|426aa|up_2|NZ_CP030265.1_1778648_1779926_+	PRK08318, PRK08318, NAD-dependent dihydropyrimidine dehydrogenase subunit PreA	NA|175aa|up_1|NZ_CP030265.1_1780603_1781128_+	pfam00030, Crystall, Beta/Gamma crystallin	NA|215aa|up_0|NZ_CP030265.1_1781250_1781895_-	pfam03592, Terminase_2, Terminase small subunit	cas2|97aa|down_0|NZ_CP030265.1_1786550_1786841_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas4|208aa|down_1|NZ_CP030265.1_1787903_1788527_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas3|749aa|down_2|NZ_CP030265.1_1788526_1790773_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	cas7b|304aa|down_3|NZ_CP030265.1_1790782_1791694_-	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7	cas8c|711aa|down_4|NZ_CP030265.1_1791686_1793819_-	NA	cas5|212aa|down_5|NZ_CP030265.1_1793808_1794444_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	NA|96aa|down_6|NZ_CP030265.1_1794854_1795142_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|160aa|down_7|NZ_CP030265.1_1795157_1795637_-	smart00903, Flavin_Reduct, Flavin reductase like domain	NA|287aa|down_8|NZ_CP030265.1_1795856_1796717_+	TIGR03818, MotA1, flagellar motor stator protein MotA	NA|315aa|down_9|NZ_CP030265.1_1796730_1797675_+	PRK09041, motB, motility protein MotB
GCF_008843145.1_ASM884314v1	NZ_CP030265	Skermanella sp. W17 chromosome, complete genome	3	2017501-2017912	3	PILER-CR	no		RT,csa3,cas2,cas4,cas3,cas7b,cas8c,cas5,DEDDh,DinG	Orphan	CGGCATCGCTGAGGGCGGTGATCAGCGCCGGCAC	34	0	0	NA	NA	NA	4	4	Orphan	RT,csa3,cas2,cas4,cas3,cas7b,cas8c,cas5,DEDDh,DinG	NA,NA|114aa|down_2|NZ_CP030265.1_2022347_2022689_+,NA|66aa|down_3|NZ_CP030265.1_2022706_2022904_+	NA|397aa|up_9|NZ_CP030265.1_2002174_2003365_+	pfam15611, EH_Signature, EH_Signature domain	NA|985aa|up_8|NZ_CP030265.1_2003327_2006282_+	COG0553, HepA, Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]	NA|401aa|up_7|NZ_CP030265.1_2006195_2007398_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|523aa|up_6|NZ_CP030265.1_2008298_2009867_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|230aa|up_5|NZ_CP030265.1_2010019_2010709_+	pfam12728, HTH_17, Helix-turn-helix domain	NA|120aa|up_4|NZ_CP030265.1_2010725_2011085_-	PRK08181, PRK08181, transposase; Validated	NA|501aa|up_3|NZ_CP030265.1_2011081_2012584_-	pfam00665, rve, Integrase core domain	NA|80aa|up_2|NZ_CP030265.1_2013695_2013935_+	pfam11455, DUF3018, Protein of unknown function (DUF3018)	NA|116aa|up_1|NZ_CP030265.1_2013931_2014279_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|49aa|up_0|NZ_CP030265.1_2015762_2015909_+	pfam07508, Recombinase, Recombinase	NA|167aa|down_0|NZ_CP030265.1_2020372_2020873_-	pfam14015, DUF4231, Protein of unknown function (DUF4231)	NA|206aa|down_1|NZ_CP030265.1_2021444_2022062_+	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	NA|114aa|down_2|NZ_CP030265.1_2022347_2022689_+	NA	NA|66aa|down_3|NZ_CP030265.1_2022706_2022904_+	NA	NA|436aa|down_4|NZ_CP030265.1_2023043_2024351_-	cd01184, INT_C_like_1, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain	NA|290aa|down_5|NZ_CP030265.1_2024359_2025229_-	PLN03209, PLN03209, translocon at the inner envelope of chloroplast subunit 62; Provisional	NA|92aa|down_6|NZ_CP030265.1_2025565_2025841_+	pfam12728, HTH_17, Helix-turn-helix domain	NA|361aa|down_7|NZ_CP030265.1_2025726_2026809_+	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain	NA|356aa|down_8|NZ_CP030265.1_2027850_2028917_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|1395aa|down_9|NZ_CP030265.1_2029462_2033647_+	COG1112, COG1112, Superfamily I DNA and RNA helicases and helicase subunits [DNA replication, recombination, and repair]
GCF_008843145.1_ASM884314v1	NZ_CP030265	Skermanella sp. W17 chromosome, complete genome	4	3263231-3263314	2	CRISPRCasFinder	no	csa3	RT,csa3,cas2,cas4,cas3,cas7b,cas8c,cas5,DEDDh,DinG	Type I-A	GGCGTCAATCTCAGCGGTGCCAAT	24	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas2,cas4,cas3,cas7b,cas8c,cas5,DEDDh,DinG	NA,NA|318aa|down_6|NZ_CP030265.1_3271693_3272647_-,NA|406aa|down_8|NZ_CP030265.1_3273967_3275185_-	NA|253aa|up_9|NZ_CP030265.1_3254830_3255589_-	COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	NA|127aa|up_8|NZ_CP030265.1_3255892_3256273_-	COG5637, COG5637, Predicted integral membrane protein [Function unknown]	NA|223aa|up_7|NZ_CP030265.1_3256367_3257036_-	cd05540, UreG, urease accessory protein UreG	NA|250aa|up_6|NZ_CP030265.1_3257032_3257782_-	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones]	NA|149aa|up_5|NZ_CP030265.1_3257771_3258218_-	PRK13261, ureE, urease accessory protein UreE; Provisional	NA|570aa|up_4|NZ_CP030265.1_3258241_3259951_-	PRK13207, ureC, urease subunit alpha; Reviewed	NA|102aa|up_3|NZ_CP030265.1_3260001_3260307_-	PRK13203, ureB, urease subunit beta; Reviewed	NA|101aa|up_2|NZ_CP030265.1_3260318_3260621_-	PRK13241, ureA, urease subunit gamma; Provisional	NA|297aa|up_1|NZ_CP030265.1_3260668_3261559_-	pfam01774, UreD, UreD urease accessory protein	NA|241aa|up_0|NZ_CP030265.1_3261731_3262454_-	TIGR02135, Uncharacterized_protein, phosphate transport system regulatory protein PhoU	NA|170aa|down_0|NZ_CP030265.1_3264072_3264582_-	COG1846, MarR, Transcriptional regulators [Transcription]	NA|295aa|down_1|NZ_CP030265.1_3265153_3266038_+	TIGR03381, putative_carbon-nitrogen_hydrolase, N-carbamoylputrescine amidase	NA|1029aa|down_2|NZ_CP030265.1_3266267_3269354_+	COG1596, Wza, Periplasmic protein involved in polysaccharide export, contains    SLBB domain of b-grasp fold [Cell wall/membrane/envelope biogenesis]	NA|265aa|down_3|NZ_CP030265.1_3269350_3270145_+	cd06433, GT_2_WfgS_like, WfgS and WfeV are involved in O-antigen biosynthesis	NA|159aa|down_4|NZ_CP030265.1_3270354_3270831_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|270aa|down_5|NZ_CP030265.1_3270839_3271649_-	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide	NA|318aa|down_6|NZ_CP030265.1_3271693_3272647_-	NA	NA|406aa|down_7|NZ_CP030265.1_3272648_3273866_-	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|406aa|down_8|NZ_CP030265.1_3273967_3275185_-	NA	NA|164aa|down_9|NZ_CP030265.1_3275434_3275926_+	cd17546, REC_hyHK_CKI1_RcsC-like, phosphoacceptor receiver (REC) domain of hybrid sensor histidine kinases/response regulators similar to Arabidopsis thaliana CKI1 and Escherichia coli RcsC
