assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008931605.1_ASM893160v1	NZ_CP042545	Klebsiella michiganensis strain C52 chromosome, complete genome	1	428869-428959	1	CRISPRCasFinder	no		cas3,cas14j,csa3,RT,DEDDh,DinG,WYL	Orphan	TCCGGGCTACCCGAACGCAGGCGG	24	0	0	NA	NA	NA	1	1	Orphan	cas3,cas14j,csa3,RT,DEDDh,DinG,WYL	NA,NA	NA|294aa|up_9|NZ_CP042545.1_416910_417792_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|103aa|up_8|NZ_CP042545.1_417963_418272_-	pfam01845, CcdB, CcdB protein	NA|79aa|up_7|NZ_CP042545.1_418274_418511_-	pfam07362, CcdA, Post-segregation antitoxin CcdA	NA|478aa|up_6|NZ_CP042545.1_418616_420050_-	PRK09586, murP, PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed	NA|301aa|up_5|NZ_CP042545.1_420074_420977_-	PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed	NA|389aa|up_4|NZ_CP042545.1_421137_422304_-	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|455aa|up_3|NZ_CP042545.1_422354_423719_-	PRK09837, PRK09837, Cu(I)/Ag(I) efflux RND transporter outer membrane protein	NA|1036aa|up_2|NZ_CP042545.1_423722_426830_-	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family	NA|375aa|up_1|NZ_CP042545.1_426829_427954_-	PRK15030, PRK15030, multidrug efflux RND transporter periplasmic adaptor subunit AcrA	NA|139aa|up_0|NZ_CP042545.1_428407_428824_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|216aa|down_0|NZ_CP042545.1_429025_429673_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|499aa|down_1|NZ_CP042545.1_429753_431250_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|305aa|down_2|NZ_CP042545.1_431246_432161_-	cd08471, PBP2_CrgA_like_2, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|207aa|down_3|NZ_CP042545.1_432263_432884_+	COG3576, COG3576, Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase [General function prediction only]	NA|157aa|down_4|NZ_CP042545.1_433014_433485_+	pfam07080, DUF1348, Protein of unknown function (DUF1348)	NA|270aa|down_5|NZ_CP042545.1_433740_434550_+	PRK09861, PRK09861, lipoprotein NlpA	NA|287aa|down_6|NZ_CP042545.1_434574_435435_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|185aa|down_7|NZ_CP042545.1_435426_435981_-	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	NA|260aa|down_8|NZ_CP042545.1_436150_436930_+	COG2220, COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]	NA|318aa|down_9|NZ_CP042545.1_436944_437898_+	PRK09393, ftrA, transcriptional activator FtrA; Provisional
GCF_008931605.1_ASM893160v1	NZ_CP042545	Klebsiella michiganensis strain C52 chromosome, complete genome	2	4230235-4230442	1,2,1	CRT,CRISPRCasFinder,PILER-CR	no		cas3,cas14j,csa3,RT,DEDDh,DinG,WYL	Orphan	TTTCTAAGCTGCCTGTACGGCAGTGAAC,TAAGCTGCCTGTACGGCAGTGAA,TTTCTAAGCTGCCTGTACGGCAGTGAAC	28,23,28	0	0	NA	NA	I-F:I-F:I-F	3,3,2	3	Orphan	cas3,cas14j,csa3,RT,DEDDh,DinG,WYL	NA,NA	NA|431aa|up_9|NZ_CP042545.1_4215429_4216722_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|448aa|up_8|NZ_CP042545.1_4216813_4218157_-	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|204aa|up_7|NZ_CP042545.1_4218165_4218777_-	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA	NA|1397aa|up_6|NZ_CP042545.1_4218898_4223089_-	PRK10263, PRK10263, DNA translocase FtsK; Provisional	NA|165aa|up_5|NZ_CP042545.1_4223224_4223719_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|323aa|up_4|NZ_CP042545.1_4224250_4225219_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_3|NZ_CP042545.1_4225333_4227100_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_2|NZ_CP042545.1_4227100_4228822_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_1|NZ_CP042545.1_4228860_4229565_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|73aa|up_0|NZ_CP042545.1_4229844_4230063_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|761aa|down_0|NZ_CP042545.1_4230631_4232914_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|106aa|down_1|NZ_CP042545.1_4232944_4233262_-	COG2127, COG2127, Uncharacterized conserved protein [Function unknown]	NA|77aa|down_2|NZ_CP042545.1_4233586_4233817_+	PRK14998, PRK14998, cold shock-like protein CspD; Provisional	NA|649aa|down_3|NZ_CP042545.1_4233884_4235831_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|372aa|down_4|NZ_CP042545.1_4235827_4236943_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|553aa|down_5|NZ_CP042545.1_4237118_4238777_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|232aa|down_6|NZ_CP042545.1_4239159_4239855_+	PRK05420, PRK05420, aquaporin Z; Provisional	NA|300aa|down_7|NZ_CP042545.1_4239980_4240880_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_8|NZ_CP042545.1_4241024_4242677_+	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|323aa|down_9|NZ_CP042545.1_4242687_4243656_+	PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional
GCF_008931605.1_ASM893160v1	NZ_CP042545	Klebsiella michiganensis strain C52 chromosome, complete genome	3	4581622-4581731	3	CRISPRCasFinder	no		cas3,cas14j,csa3,RT,DEDDh,DinG,WYL	Orphan	ACCCGTAGCCCGGGTAAGCGCAGCGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,cas14j,csa3,RT,DEDDh,DinG,WYL	NA,NA|79aa|down_7|NZ_CP042545.1_4590190_4590427_+	NA|400aa|up_9|NZ_CP042545.1_4570503_4571703_+	PRK09550, mtnK, methylthioribose kinase; Reviewed	NA|414aa|up_8|NZ_CP042545.1_4571830_4573072_-	COG5276, COG5276, Uncharacterized conserved protein [Function unknown]	NA|355aa|up_7|NZ_CP042545.1_4573068_4574133_-	cd06305, PBP1_methylthioribose_binding-like, similar to methylthioribose-binding protein of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily	NA|333aa|up_6|NZ_CP042545.1_4574277_4575276_-	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|501aa|up_5|NZ_CP042545.1_4575272_4576775_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|363aa|up_4|NZ_CP042545.1_4576935_4578024_+	PRK10586, PRK10586, putative oxidoreductase; Provisional	NA|98aa|up_3|NZ_CP042545.1_4578210_4578504_+	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|135aa|up_2|NZ_CP042545.1_4578484_4578889_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|66aa|up_1|NZ_CP042545.1_4578885_4579083_-	COG2879, COG2879, Uncharacterized small protein [Function unknown]	NA|702aa|up_0|NZ_CP042545.1_4579138_4581244_-	PRK15015, PRK15015, carbon starvation protein CstA	NA|138aa|down_0|NZ_CP042545.1_4581752_4582166_-	PRK10254, PRK10254, proofreading thioesterase EntH	NA|252aa|down_1|NZ_CP042545.1_4582166_4582922_-	PRK08220, PRK08220, 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	NA|284aa|down_2|NZ_CP042545.1_4582921_4583773_-	COG1535, EntB, Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|536aa|down_3|NZ_CP042545.1_4583786_4585394_-	PRK10946, entE, (2,3-dihydroxybenzoyl)adenylate synthase	NA|392aa|down_4|NZ_CP042545.1_4585403_4586579_-	PRK15016, PRK15016, isochorismate synthase EntC; Provisional	NA|320aa|down_5|NZ_CP042545.1_4586766_4587726_+	PRK10957, PRK10957, iron-enterobactin transporter periplasmic binding protein; Provisional	NA|706aa|down_6|NZ_CP042545.1_4587955_4590073_+	COG3325, ChiA, Chitinase [Carbohydrate transport and metabolism]	NA|79aa|down_7|NZ_CP042545.1_4590190_4590427_+	NA	NA|414aa|down_8|NZ_CP042545.1_4590796_4592038_-	PRK10489, PRK10489, enterobactin transporter EntS	NA|336aa|down_9|NZ_CP042545.1_4592150_4593158_+	PRK10441, PRK10441, Fe(3+)-siderophore ABC transporter permease
GCF_008931605.1_ASM893160v1	NZ_CP042545	Klebsiella michiganensis strain C52 chromosome, complete genome	4	5489094-5489219	4	CRISPRCasFinder	no		cas3,cas14j,csa3,RT,DEDDh,DinG,WYL	Orphan	TGGTCGCCCGGACAGGCGCGTCAAGCGCCGCCTCCGGG	38	0	0	NA	NA	NA	1	1	Orphan	cas3,cas14j,csa3,RT,DEDDh,DinG,WYL	NA,NA|323aa|down_2|NZ_CP042545.1_5491107_5492076_-	NA|384aa|up_9|NZ_CP042545.1_5480615_5481767_+	COG1775, HgdB, Benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit, BcrC/BadD/HgdB [Amino acid transport and metabolism]	NA|256aa|up_8|NZ_CP042545.1_5481775_5482543_+	TIGR00241, Uncharacterized_protein_MJ0004, CoA-substrate-specific enzyme activase, putative	NA|85aa|up_7|NZ_CP042545.1_5482539_5482794_+	pfam11823, DUF3343, Protein of unknown function (DUF3343)	NA|368aa|up_6|NZ_CP042545.1_5482853_5483957_-	cd08018, M20_Acy1_amhX-like, M20 Peptidase aminoacylase 1 amhX-like subfamily	NA|156aa|up_5|NZ_CP042545.1_5483977_5484445_-	PRK10519, PRK10519, hypothetical protein; Provisional	NA|228aa|up_4|NZ_CP042545.1_5484437_5485121_-	COG3314, COG3314, Uncharacterized protein conserved in bacteria [Function unknown]	NA|305aa|up_3|NZ_CP042545.1_5485433_5486348_+	cd08426, PBP2_LTTR_like_5, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|355aa|up_2|NZ_CP042545.1_5486350_5487415_-	pfam11168, DUF2955, Protein of unknown function (DUF2955)	NA|356aa|up_1|NZ_CP042545.1_5487404_5488472_-	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|155aa|up_0|NZ_CP042545.1_5488478_5488943_-	PRK03573, PRK03573, transcriptional regulator SlyA; Provisional	NA|55aa|down_0|NZ_CP042545.1_5489246_5489411_-	COG5457, COG5457, Uncharacterized conserved small protein [Function unknown]	NA|475aa|down_1|NZ_CP042545.1_5489588_5491013_+	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]	NA|323aa|down_2|NZ_CP042545.1_5491107_5492076_-	NA	NA|810aa|down_3|NZ_CP042545.1_5492217_5494647_+	COG4096, HsdR, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]	NA|490aa|down_4|NZ_CP042545.1_5494721_5496191_+	pfam02384, N6_Mtase, N-6 DNA Methylase	NA|112aa|down_5|NZ_CP042545.1_5498197_5498533_+	PRK13605, PRK13605, endoribonuclease SymE; Provisional	NA|304aa|down_6|NZ_CP042545.1_5498985_5499897_+	COG2421, COG2421, Predicted acetamidase/formamidase [Energy production and conversion]	NA|448aa|down_7|NZ_CP042545.1_5499893_5501237_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|101aa|down_8|NZ_CP042545.1_5501357_5501660_-	COG3514, COG3514, Uncharacterized protein conserved in bacteria [Function unknown]	NA|96aa|down_9|NZ_CP042545.1_5501646_5501934_-	COG2929, COG2929, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_008931605.1_ASM893160v1	NZ_CP042548	Klebsiella michiganensis strain C52 plasmid pC52_003, complete sequence	1	16584-16711	1	PILER-CR	no			Orphan	CCGGCTCTTTCTGTATTGTGCAATACAG	28	0	0	NA	NA	NA	2	2	Orphan	cas3,cas14j,csa3,RT,DEDDh,DinG,WYL	NA|177aa|up_9|NZ_CP042548.1_9941_10472_+,NA|90aa|up_7|NZ_CP042548.1_12605_12875_+,NA|67aa|up_6|NZ_CP042548.1_12916_13117_+,NA|61aa|up_3|NZ_CP042548.1_14729_14912_+,NA|68aa|up_2|NZ_CP042548.1_14970_15174_-,NA|98aa|up_1|NZ_CP042548.1_15382_15676_-,NA|239aa|up_0|NZ_CP042548.1_15753_16470_-,NA|73aa|down_0|NZ_CP042548.1_17583_17802_+,NA|222aa|down_3|NZ_CP042548.1_22553_23219_+,NA|121aa|down_4|NZ_CP042548.1_23211_23574_+	NA|177aa|up_9|NZ_CP042548.1_9941_10472_+	NA	NA|264aa|up_8|NZ_CP042548.1_11645_12437_+	pfam18847, LPD29, Large polyvalent protein associated domain 29	NA|90aa|up_7|NZ_CP042548.1_12605_12875_+	NA	NA|67aa|up_6|NZ_CP042548.1_12916_13117_+	NA	NA|166aa|up_5|NZ_CP042548.1_13171_13669_+	pfam05443, ROS_MUCR, ROS/MUCR transcriptional regulator protein	NA|69aa|up_4|NZ_CP042548.1_14448_14655_+	pfam06006, DUF905, Bacterial protein of unknown function (DUF905)	NA|61aa|up_3|NZ_CP042548.1_14729_14912_+	NA	NA|68aa|up_2|NZ_CP042548.1_14970_15174_-	NA	NA|98aa|up_1|NZ_CP042548.1_15382_15676_-	NA	NA|239aa|up_0|NZ_CP042548.1_15753_16470_-	NA	NA|73aa|down_0|NZ_CP042548.1_17583_17802_+	NA	NA|511aa|down_1|NZ_CP042548.1_17801_19334_+	cd01127, TrwB, Bacterial conjugation protein TrwB,  ATP binding domain	NA|1073aa|down_2|NZ_CP042548.1_19338_22557_+	pfam08751, TrwC, TrwC relaxase	NA|222aa|down_3|NZ_CP042548.1_22553_23219_+	NA	NA|121aa|down_4|NZ_CP042548.1_23211_23574_+	NA	NA|176aa|down_5|NZ_CP042548.1_24501_25029_-	cd09170, PLDc_Nuc, Catalytic domain of EDTA-resistant nuclease Nuc from Salmonella typhimurium and similar proteins	NA|334aa|down_6|NZ_CP042548.1_25025_26027_-	TIGR02788, conjugal_transfer_protein, P-type DNA transfer ATPase VirB11	NA|378aa|down_7|NZ_CP042548.1_26077_27211_-	cd16429, VirB10, VirB10 forms part of core complex in Type IV secretion system (T4SS)	NA|296aa|down_8|NZ_CP042548.1_27210_28098_-	TIGR02781, Protein_virB9, P-type conjugative transfer protein VirB9	NA|232aa|down_9|NZ_CP042548.1_28108_28804_-	cd16424, VirB8, periplasmic domain of VirB8 protein
