assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_008949495.1_ASM894949v1	NZ_CP043033	Escherichia coli strain XDL chromosome, complete genome	1	97693-97831	1	CRISPRCasFinder	no		WYL,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	CTCATACTGACAGTCAGGTCACAGCAGTACGTGATGAACT	40	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA|64aa|up_7|NZ_CP043033.1_89870_90062_-,NA	NA|78aa|up_9|NZ_CP043033.1_88475_88709_+	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|183aa|up_8|NZ_CP043033.1_88986_89535_+	pfam11726, Inovirus_Gp2, Inovirus Gp2	NA|64aa|up_7|NZ_CP043033.1_89870_90062_-	NA	NA|340aa|up_6|NZ_CP043033.1_90657_91677_-	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators	NA|148aa|up_5|NZ_CP043033.1_91934_92378_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|91aa|up_4|NZ_CP043033.1_92456_92729_+	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|463aa|up_3|NZ_CP043033.1_92751_94140_+	PRK12996, ulaA, PTS ascorbate transporter subunit IIC	NA|277aa|up_2|NZ_CP043033.1_94136_94967_+	COG3959, COG3959, Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]	NA|318aa|up_1|NZ_CP043033.1_94959_95913_+	COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]	NA|38aa|up_0|NZ_CP043033.1_96175_96289_+	pfam01527, HTH_Tnp_1, Transposase	NA|113aa|down_0|NZ_CP043033.1_99237_99576_-	PRK13791, PRK13791, c-type lysozyme inhibitor	NA|230aa|down_1|NZ_CP043033.1_100080_100770_-	PRK01130, PRK01130, putative N-acetylmannosamine-6-phosphate 2-epimerase	NA|519aa|down_2|NZ_CP043033.1_100769_102326_-	TIGR02002, PTS_system_glucose-specific_IIABC_component, PTS system, glucose-specific IIBC component	NA|275aa|down_3|NZ_CP043033.1_102491_103316_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|448aa|down_4|NZ_CP043033.1_103472_104816_-	COG4222, COG4222, Uncharacterized protein conserved in bacteria [Function unknown]	NA|425aa|down_5|NZ_CP043033.1_104935_106209_-	PRK09409, PRK09409, IS2 transposase TnpB; Reviewed	NA|439aa|down_6|NZ_CP043033.1_107646_108963_-	PRK10974, PRK10974, sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA|62aa|down_7|NZ_CP043033.1_109133_109319_+	COG2337, MazF, Growth inhibitor [Signal transduction mechanisms]	NA|36aa|down_8|NZ_CP043033.1_109327_109435_+	COG2337, MazF, Growth inhibitor [Signal transduction mechanisms]	NA|657aa|down_9|NZ_CP043033.1_111306_113277_+	TIGR01785, Heme/hemopexin_utilization_protein_C, TonB-dependent heme/hemoglobin receptor family protein
GCF_008949495.1_ASM894949v1	NZ_CP043033	Escherichia coli strain XDL chromosome, complete genome	2	1283198-1284507	1,2,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	WYL,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Type I-E	GTGTTCCCTGCGCCAGCGGGGATAAACCGG,GTGTTCCCTGCGCCAGCGGGGATAAACCG,GTGTTCCCTGCGCCAGCGGGGATAAACCG,GTGTTCCCTGCGCCAGCGGGGATAAACCG	30,29,29,29	0	0	NA	NA	I-E:I-E:I-E:I-E	19,21,21,19	21	TypeI-E	WYL,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|245aa|up_9|NZ_CP043033.1_1273193_1273928_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_8|NZ_CP043033.1_1274192_1274345_+	pfam01848, HOK_GEF, Hok/gef family	cas3|900aa|up_7|NZ_CP043033.1_1274539_1277239_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|521aa|up_6|NZ_CP043033.1_1277336_1278899_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|179aa|up_5|NZ_CP043033.1_1278895_1279432_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|352aa|up_4|NZ_CP043033.1_1279446_1280502_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP043033.1_1280512_1281259_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP043033.1_1281240_1281891_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP043033.1_1281887_1282811_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP043033.1_1282807_1283101_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP043033.1_1284590_1285628_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP043033.1_1285879_1286788_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP043033.1_1286789_1288217_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP043033.1_1288216_1288822_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP043033.1_1288871_1289195_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP043033.1_1289388_1289700_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP043033.1_1289718_1290429_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP043033.1_1290428_1290908_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP043033.1_1290904_1291954_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP043033.1_1291934_1292696_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_008949495.1_ASM894949v1	NZ_CP043033	Escherichia coli strain XDL chromosome, complete genome	3	4173295-4173427	3	PILER-CR	no		WYL,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	WYL,cas3,csa3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA|150aa|up_9|NZ_CP043033.1_4164536_4164986_+,NA	NA|150aa|up_9|NZ_CP043033.1_4164536_4164986_+	NA	NA|60aa|up_8|NZ_CP043033.1_4165102_4165282_-	COG5302, COG5302, Post-segregation antitoxin (ccd killing mechanism protein) encoded by the F plasmid [General function prediction only]	NA|160aa|up_7|NZ_CP043033.1_4165302_4165782_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP043033.1_4165973_4167836_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP043033.1_4167828_4168359_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP043033.1_4168466_4169798_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP043033.1_4169856_4170144_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP043033.1_4170140_4171427_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP043033.1_4171477_4172419_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP043033.1_4172433_4173204_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP043033.1_4173676_4175191_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP043033.1_4175221_4176364_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP043033.1_4176492_4177710_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP043033.1_4177783_4179337_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP043033.1_4179445_4180231_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP043033.1_4180236_4180827_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP043033.1_4180945_4181341_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1074aa|down_7|NZ_CP043033.1_4181601_4184823_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP043033.1_4184840_4185989_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP043033.1_4186444_4187266_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
