assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009177345.1_ASM917734v1	NZ_AP019684	Xanthomonas campestris pv. campestris strain MAFF302021	1	597060-598090	1	CRISPRCasFinder	no		cas3,RT,WYL,DinG,csa3,DEDDh	Orphan	CTCACTGCCGGCTATGGCAGCAC	23	3	5	597803-597827|597803-597827|597947-597971|597995-598019|597995-598019	NZ_AP019684.1_598235-598259|NZ_AP019684.1_598523-598547|NZ_AP019684.1_598091-598115|NZ_AP019684.1_598139-598163|NZ_AP019684.1_598715-598739	NA	21	21	Orphan	cas3,RT,WYL,DinG,csa3,DEDDh	NA|282aa|up_9|NZ_AP019684.1_585036_585882_-,NA|148aa|up_4|NZ_AP019684.1_591327_591771_+,NA|165aa|down_3|NZ_AP019684.1_603428_603923_+,NA|307aa|down_5|NZ_AP019684.1_605338_606259_+,NA|122aa|down_6|NZ_AP019684.1_606255_606621_+	NA|282aa|up_9|NZ_AP019684.1_585036_585882_-	NA	NA|528aa|up_8|NZ_AP019684.1_585905_587489_-	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|205aa|up_7|NZ_AP019684.1_587564_588179_+	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]	NA|588aa|up_6|NZ_AP019684.1_588233_589997_+	pfam12147, Methyltransf_20, Putative methyltransferase	NA|446aa|up_5|NZ_AP019684.1_589993_591331_+	cd14527, DSP_bac, unknown subfamily of bacterial and plant dual specificity protein phosphatases	NA|148aa|up_4|NZ_AP019684.1_591327_591771_+	NA	NA|499aa|up_3|NZ_AP019684.1_591767_593264_+	TIGR04222, integral_membrane_protein, TIGR04222 domain	NA|216aa|up_2|NZ_AP019684.1_593263_593911_+	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]	NA|211aa|up_1|NZ_AP019684.1_593907_594540_+	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|325aa|up_0|NZ_AP019684.1_594536_595511_+	COG4589, COG4589, Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only]	NA|91aa|down_0|NZ_AP019684.1_600951_601224_-	PRK00430, fis, DNA-binding transcriptional regulator Fis	NA|426aa|down_1|NZ_AP019684.1_601339_602617_-	pfam11906, DUF3426, Protein of unknown function (DUF3426)	NA|126aa|down_2|NZ_AP019684.1_602902_603280_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|165aa|down_3|NZ_AP019684.1_603428_603923_+	NA	NA|307aa|down_4|NZ_AP019684.1_603924_604845_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|307aa|down_5|NZ_AP019684.1_605338_606259_+	NA	NA|122aa|down_6|NZ_AP019684.1_606255_606621_+	NA	NA|456aa|down_7|NZ_AP019684.1_607238_608606_-	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated	NA|129aa|down_8|NZ_AP019684.1_608648_609035_-	PRK12275, PRK12275, hypothetical protein; Reviewed	NA|161aa|down_9|NZ_AP019684.1_609052_609535_-	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein
GCF_009177345.1_ASM917734v1	NZ_AP019684	Xanthomonas campestris pv. campestris strain MAFF302021	2	598746-599297	2	CRISPRCasFinder	no		cas3,RT,WYL,DinG,csa3,DEDDh	Orphan	GCCGGTTATGGCAGTACCCAGAC	23	0	0	NA	NA	NA	11	11	Orphan	cas3,RT,WYL,DinG,csa3,DEDDh	NA|282aa|up_9|NZ_AP019684.1_585036_585882_-,NA|148aa|up_4|NZ_AP019684.1_591327_591771_+,NA|165aa|down_3|NZ_AP019684.1_603428_603923_+,NA|307aa|down_5|NZ_AP019684.1_605338_606259_+,NA|122aa|down_6|NZ_AP019684.1_606255_606621_+	NA|282aa|up_9|NZ_AP019684.1_585036_585882_-	NA	NA|528aa|up_8|NZ_AP019684.1_585905_587489_-	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|205aa|up_7|NZ_AP019684.1_587564_588179_+	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]	NA|588aa|up_6|NZ_AP019684.1_588233_589997_+	pfam12147, Methyltransf_20, Putative methyltransferase	NA|446aa|up_5|NZ_AP019684.1_589993_591331_+	cd14527, DSP_bac, unknown subfamily of bacterial and plant dual specificity protein phosphatases	NA|148aa|up_4|NZ_AP019684.1_591327_591771_+	NA	NA|499aa|up_3|NZ_AP019684.1_591767_593264_+	TIGR04222, integral_membrane_protein, TIGR04222 domain	NA|216aa|up_2|NZ_AP019684.1_593263_593911_+	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]	NA|211aa|up_1|NZ_AP019684.1_593907_594540_+	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|325aa|up_0|NZ_AP019684.1_594536_595511_+	COG4589, COG4589, Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only]	NA|91aa|down_0|NZ_AP019684.1_600951_601224_-	PRK00430, fis, DNA-binding transcriptional regulator Fis	NA|426aa|down_1|NZ_AP019684.1_601339_602617_-	pfam11906, DUF3426, Protein of unknown function (DUF3426)	NA|126aa|down_2|NZ_AP019684.1_602902_603280_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|165aa|down_3|NZ_AP019684.1_603428_603923_+	NA	NA|307aa|down_4|NZ_AP019684.1_603924_604845_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|307aa|down_5|NZ_AP019684.1_605338_606259_+	NA	NA|122aa|down_6|NZ_AP019684.1_606255_606621_+	NA	NA|456aa|down_7|NZ_AP019684.1_607238_608606_-	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated	NA|129aa|down_8|NZ_AP019684.1_608648_609035_-	PRK12275, PRK12275, hypothetical protein; Reviewed	NA|161aa|down_9|NZ_AP019684.1_609052_609535_-	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein
GCF_009177345.1_ASM917734v1	NZ_AP019684	Xanthomonas campestris pv. campestris strain MAFF302021	3	599370-599776	3	CRISPRCasFinder	no		cas3,RT,WYL,DinG,csa3,DEDDh	Orphan	GCCGGTTATGGCAGTACCCAGAC	23	0	0	NA	NA	NA	8	8	Orphan	cas3,RT,WYL,DinG,csa3,DEDDh	NA|282aa|up_9|NZ_AP019684.1_585036_585882_-,NA|148aa|up_4|NZ_AP019684.1_591327_591771_+,NA|165aa|down_3|NZ_AP019684.1_603428_603923_+,NA|307aa|down_5|NZ_AP019684.1_605338_606259_+,NA|122aa|down_6|NZ_AP019684.1_606255_606621_+	NA|282aa|up_9|NZ_AP019684.1_585036_585882_-	NA	NA|528aa|up_8|NZ_AP019684.1_585905_587489_-	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|205aa|up_7|NZ_AP019684.1_587564_588179_+	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]	NA|588aa|up_6|NZ_AP019684.1_588233_589997_+	pfam12147, Methyltransf_20, Putative methyltransferase	NA|446aa|up_5|NZ_AP019684.1_589993_591331_+	cd14527, DSP_bac, unknown subfamily of bacterial and plant dual specificity protein phosphatases	NA|148aa|up_4|NZ_AP019684.1_591327_591771_+	NA	NA|499aa|up_3|NZ_AP019684.1_591767_593264_+	TIGR04222, integral_membrane_protein, TIGR04222 domain	NA|216aa|up_2|NZ_AP019684.1_593263_593911_+	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]	NA|211aa|up_1|NZ_AP019684.1_593907_594540_+	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|325aa|up_0|NZ_AP019684.1_594536_595511_+	COG4589, COG4589, Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only]	NA|91aa|down_0|NZ_AP019684.1_600951_601224_-	PRK00430, fis, DNA-binding transcriptional regulator Fis	NA|426aa|down_1|NZ_AP019684.1_601339_602617_-	pfam11906, DUF3426, Protein of unknown function (DUF3426)	NA|126aa|down_2|NZ_AP019684.1_602902_603280_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|165aa|down_3|NZ_AP019684.1_603428_603923_+	NA	NA|307aa|down_4|NZ_AP019684.1_603924_604845_-	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|307aa|down_5|NZ_AP019684.1_605338_606259_+	NA	NA|122aa|down_6|NZ_AP019684.1_606255_606621_+	NA	NA|456aa|down_7|NZ_AP019684.1_607238_608606_-	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated	NA|129aa|down_8|NZ_AP019684.1_608648_609035_-	PRK12275, PRK12275, hypothetical protein; Reviewed	NA|161aa|down_9|NZ_AP019684.1_609052_609535_-	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein
GCF_009177345.1_ASM917734v1	NZ_AP019684	Xanthomonas campestris pv. campestris strain MAFF302021	4	668879-668978	4	CRISPRCasFinder	no		cas3,RT,WYL,DinG,csa3,DEDDh	Orphan	TCAGCTCGTGTAGGAGCGGCCCAGGCCGCGAG	32	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,WYL,DinG,csa3,DEDDh	NA|107aa|up_9|NZ_AP019684.1_658208_658529_+,NA|238aa|up_6|NZ_AP019684.1_661961_662675_-,NA|168aa|up_4|NZ_AP019684.1_664852_665356_-,NA	NA|107aa|up_9|NZ_AP019684.1_658208_658529_+	NA	NA|120aa|up_8|NZ_AP019684.1_658516_658876_+	pfam11804, DUF3325, Protein of unknown function (DUF3325)	NA|938aa|up_7|NZ_AP019684.1_659065_661879_+	PRK11072, PRK11072, bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase	NA|238aa|up_6|NZ_AP019684.1_661961_662675_-	NA	NA|186aa|up_5|NZ_AP019684.1_664066_664624_-	COG1738, yhhQ, Uncharacterized member of the PurR regulon [General function prediction only]	NA|168aa|up_4|NZ_AP019684.1_664852_665356_-	NA	NA|287aa|up_3|NZ_AP019684.1_665352_666213_-	pfam09916, DUF2145, Uncharacterized protein conserved in bacteria (DUF2145)	NA|316aa|up_2|NZ_AP019684.1_666259_667207_-	pfam06258, Mito_fiss_Elm1, Mitochondrial fission ELM1	NA|197aa|up_1|NZ_AP019684.1_667342_667933_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|241aa|up_0|NZ_AP019684.1_668023_668746_+	COG2353, COG2353, Uncharacterized conserved protein [Function unknown]	NA|263aa|down_0|NZ_AP019684.1_669037_669826_-	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family	NA|178aa|down_1|NZ_AP019684.1_669934_670468_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|549aa|down_2|NZ_AP019684.1_670665_672312_+	pfam16957, Mal_decarbox_Al, Malonate decarboxylase, alpha subunit, transporter	NA|106aa|down_3|NZ_AP019684.1_672321_672639_+	PRK02103, PRK02103, malonate decarboxylase acyl carrier protein	NA|299aa|down_4|NZ_AP019684.1_673078_673975_+	PRK07189, PRK07189, malonate decarboxylase subunit beta; Reviewed	NA|235aa|down_5|NZ_AP019684.1_673971_674676_+	pfam06833, MdcE, Malonate decarboxylase gamma subunit (MdcE)	NA|214aa|down_6|NZ_AP019684.1_674678_675320_+	PRK02098, PRK02098, phosphoribosyl-dephospho-CoA transferase; Provisional	NA|280aa|down_7|NZ_AP019684.1_675643_676483_+	TIGR03132, malonate_mdcB, triphosphoribosyl-dephospho-CoA synthase MdcB	NA|307aa|down_8|NZ_AP019684.1_676646_677567_+	TIGR03131, malonate_mdcH, malonate decarboxylase, epsilon subunit	NA|452aa|down_9|NZ_AP019684.1_677656_679012_+	pfam07158, MatC_N, Dicarboxylate carrier protein MatC N-terminus
GCF_009177345.1_ASM917734v1	NZ_AP019684	Xanthomonas campestris pv. campestris strain MAFF302021	5	1754160-1754238	5	CRISPRCasFinder	no	csa3	cas3,RT,WYL,DinG,csa3,DEDDh	Type I-A	TGGCCGAGGGCGTGGAATCGGAGGC	25	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,WYL,DinG,csa3,DEDDh	NA|82aa|up_5|NZ_AP019684.1_1745482_1745728_+,NA|57aa|up_1|NZ_AP019684.1_1748414_1748585_-,NA|98aa|down_9|NZ_AP019684.1_1768257_1768551_-	NA|425aa|up_9|NZ_AP019684.1_1740333_1741608_-	pfam01663, Phosphodiest, Type I phosphodiesterase / nucleotide pyrophosphatase	NA|181aa|up_8|NZ_AP019684.1_1742057_1742600_-	PRK00901, PRK00901, methylated-DNA--protein-cysteine methyltransferase; Provisional	NA|488aa|up_7|NZ_AP019684.1_1742596_1744060_-	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]	NA|402aa|up_6|NZ_AP019684.1_1744211_1745417_+	COG3904, COG3904, Predicted periplasmic protein [Function unknown]	NA|82aa|up_5|NZ_AP019684.1_1745482_1745728_+	NA	NA|182aa|up_4|NZ_AP019684.1_1745840_1746386_+	pfam13211, DUF4019, Protein of unknown function (DUF4019)	NA|134aa|up_3|NZ_AP019684.1_1746411_1746813_+	COG3686, COG3686, Predicted membrane protein [Function unknown]	NA|393aa|up_2|NZ_AP019684.1_1746924_1748103_+	PRK09126, PRK09126, FAD-dependent hydroxylase	NA|57aa|up_1|NZ_AP019684.1_1748414_1748585_-	NA	NA|81aa|up_0|NZ_AP019684.1_1748595_1748838_-	pfam13275, S4_2, S4 domain	NA|241aa|down_0|NZ_AP019684.1_1754412_1755135_+	PRK10475, PRK10475, 23S rRNA pseudouridine(2604) synthase RluF	NA|316aa|down_1|NZ_AP019684.1_1756066_1757014_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|276aa|down_2|NZ_AP019684.1_1757693_1758521_-	pfam01904, DUF72, Protein of unknown function DUF72	NA|167aa|down_3|NZ_AP019684.1_1758712_1759213_+	PRK09372, PRK09372, ribonuclease E inhibitor RraA	NA|520aa|down_4|NZ_AP019684.1_1759282_1760842_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|422aa|down_5|NZ_AP019684.1_1761144_1762410_+	PLN03159, PLN03159, cation/H(+) antiporter 15; Provisional	NA|611aa|down_6|NZ_AP019684.1_1762727_1764560_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|601aa|down_7|NZ_AP019684.1_1765228_1767031_-	pfam05960, DUF885, Bacterial protein of unknown function (DUF885)	NA|267aa|down_8|NZ_AP019684.1_1767253_1768054_+	pfam14257, DUF4349, Domain of unknown function (DUF4349)	NA|98aa|down_9|NZ_AP019684.1_1768257_1768551_-	NA
