assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009295965.1_ASM929596v1	NZ_CP045154	Yersinia pestis strain SCPM-O-B-5935 (I-1996) chromosome, complete genome	1	259346-259458	1	CRISPRCasFinder	no		cas3,csa3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	Orphan	CTTCACTCGGCTGCTCAAATGTGCTTT	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	NA,NA	NA|444aa|up_9|NZ_CP045154.1_243864_245196_-	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU	NA|175aa|up_8|NZ_CP045154.1_245266_245791_-	PRK05456, PRK05456, ATP-dependent protease subunit HslV	NA|282aa|up_7|NZ_CP045154.1_245890_246736_-	PRK12757, PRK12757, cell division protein FtsN; Provisional	NA|733aa|up_6|NZ_CP045154.1_248183_250382_-	PRK05580, PRK05580, primosome assembly protein PriA; Validated	NA|72aa|up_5|NZ_CP045154.1_250624_250840_+	PRK00019, rpmE, 50S ribosomal protein L31; Reviewed	NA|152aa|up_4|NZ_CP045154.1_251382_251838_-	COG4682, COG4682, Predicted membrane protein [Function unknown]	NA|106aa|up_3|NZ_CP045154.1_252186_252504_-	PRK05264, PRK05264, met regulon transcriptional regulator MetJ	NA|812aa|up_2|NZ_CP045154.1_254043_256479_+	PRK09466, metL, bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional	NA|295aa|up_1|NZ_CP045154.1_256711_257596_+	PRK09432, metF, methylenetetrahydrofolate reductase	NA|452aa|up_0|NZ_CP045154.1_257781_259136_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|879aa|down_0|NZ_CP045154.1_259877_262514_-	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed	NA|388aa|down_1|NZ_CP045154.1_262887_264051_-	PRK05111, PRK05111, acetylornithine deacetylase; Provisional	NA|335aa|down_2|NZ_CP045154.1_264301_265306_+	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated	NA|258aa|down_3|NZ_CP045154.1_265474_266248_+	cd04249, AAK_NAGK-NC, AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis	NA|458aa|down_4|NZ_CP045154.1_266414_267788_+	PRK04833, PRK04833, argininosuccinate lyase; Provisional	NA|831aa|down_5|NZ_CP045154.1_268386_270879_+	TIGR01785, Heme/hemopexin_utilization_protein_C, TonB-dependent heme/hemoglobin receptor family protein	NA|206aa|down_6|NZ_CP045154.1_271100_271718_+	pfam06438, HasA, Heme-binding protein A (HasA)	NA|603aa|down_7|NZ_CP045154.1_271883_273692_+	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]	NA|443aa|down_8|NZ_CP045154.1_273767_275096_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|268aa|down_9|NZ_CP045154.1_275160_275964_+	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]
GCF_009295965.1_ASM929596v1	NZ_CP045154	Yersinia pestis strain SCPM-O-B-5935 (I-1996) chromosome, complete genome	2	1429754-1430023	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,csa3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	Orphan	GTTCACTGCCGCACAGGCAGCTTAGA,GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA	26,28,28	1	1	1429964-1429995	NZ_CP045154.1_2549031-2549062	I-F:I-F:I-F	4,4,4	4	Orphan	cas3,csa3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	NA|84aa|up_9|NZ_CP045154.1_1415454_1415706_+,NA|194aa|up_5|NZ_CP045154.1_1417616_1418198_-,NA	NA|84aa|up_9|NZ_CP045154.1_1415454_1415706_+	NA	NA|191aa|up_8|NZ_CP045154.1_1415729_1416302_+	TIGR03344, VI_effect_Hcp1, type VI secretion system effector, Hcp1 family	NA|134aa|up_7|NZ_CP045154.1_1416313_1416715_-	pfam06836, DUF1240, Protein of unknown function (DUF1240)	NA|134aa|up_6|NZ_CP045154.1_1416947_1417349_-	pfam06836, DUF1240, Protein of unknown function (DUF1240)	NA|194aa|up_5|NZ_CP045154.1_1417616_1418198_-	NA	NA|82aa|up_4|NZ_CP045154.1_1418870_1419116_+	pfam13693, HTH_35, Winged helix-turn-helix DNA-binding	NA|771aa|up_3|NZ_CP045154.1_1419328_1421641_-	TIGR02073, Includes:_Penicillin-insensitive_transglycosylase, penicillin-binding protein 1C	NA|153aa|up_2|NZ_CP045154.1_1421886_1422345_+	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|1993aa|up_1|NZ_CP045154.1_1422459_1428438_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|183aa|up_0|NZ_CP045154.1_1428844_1429393_-	COG3477, COG3477, Predicted periplasmic/secreted protein [Function unknown]	NA|285aa|down_0|NZ_CP045154.1_1430026_1430881_-	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|509aa|down_1|NZ_CP045154.1_1431234_1432761_+	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|642aa|down_2|NZ_CP045154.1_1432795_1434721_+	COG3962, COG3962, Acetolactate synthase [Amino acid transport and metabolism]	NA|310aa|down_3|NZ_CP045154.1_1436125_1437055_+	cd19968, PBP1_ABC_IbpA-like, periplasmic sugar-binding protein IbpA of an ABC transporter and similar proteins	NA|516aa|down_4|NZ_CP045154.1_1437103_1438651_+	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|343aa|down_5|NZ_CP045154.1_1438662_1439691_+	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|378aa|down_6|NZ_CP045154.1_1439714_1440848_+	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|657aa|down_7|NZ_CP045154.1_1440879_1442850_+	pfam09863, DUF2090, Uncharacterized protein conserved in bacteria (DUF2090)	NA|307aa|down_8|NZ_CP045154.1_1443002_1443923_+	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase	NA|272aa|down_9|NZ_CP045154.1_1443932_1444748_+	COG3718, IolB, Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
GCF_009295965.1_ASM929596v1	NZ_CP045154	Yersinia pestis strain SCPM-O-B-5935 (I-1996) chromosome, complete genome	3	1986282-1986403	3	CRISPRCasFinder	no		cas3,csa3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	Orphan	CTTAATGCCAATATTAATCGACATAATCAATTG	33	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	NA,NA|73aa|down_0|NZ_CP045154.1_1986759_1986978_+	NA|685aa|up_9|NZ_CP045154.1_1972468_1974523_+	PRK11054, helD, DNA helicase IV; Provisional	NA|155aa|up_8|NZ_CP045154.1_1974583_1975048_-	PRK05234, mgsA, methylglyoxal synthase; Validated	NA|227aa|up_7|NZ_CP045154.1_1975226_1975907_-	PRK03641, PRK03641, DUF2057 family protein	NA|139aa|up_6|NZ_CP045154.1_1976222_1976639_+	COG1832, COG1832, Predicted CoA-binding protein [General function prediction only]	NA|106aa|up_5|NZ_CP045154.1_1976747_1977065_-	PRK14129, PRK14129, heat shock protein HspQ; Provisional	NA|397aa|up_4|NZ_CP045154.1_1977125_1978316_-	PRK15128, PRK15128, 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA|93aa|up_3|NZ_CP045154.1_1978409_1978688_+	PRK14426, PRK14426, acylphosphatase; Provisional	NA|110aa|up_2|NZ_CP045154.1_1978739_1979069_-	COG2920, DsrC, Dissimilatory sulfite reductase (desulfoviridin), gamma subunit [Inorganic ion transport and metabolism]	NA|806aa|up_1|NZ_CP045154.1_1982711_1985129_-	pfam01565, FAD_binding_4, FAD binding domain	NA|249aa|up_0|NZ_CP045154.1_1985282_1986029_-	PRK06172, PRK06172, SDR family oxidoreductase	NA|73aa|down_0|NZ_CP045154.1_1986759_1986978_+	NA	NA|175aa|down_1|NZ_CP045154.1_1987241_1987766_+	COG0764, FabA, 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratases [Lipid metabolism]	NA|428aa|down_2|NZ_CP045154.1_1987755_1989039_+	cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II	NA|246aa|down_3|NZ_CP045154.1_1989040_1989778_+	cd05333, BKR_SDR_c, beta-Keto acyl carrier protein reductase (BKR), involved in Type II FAS, classical (c) SDRs	NA|413aa|down_4|NZ_CP045154.1_1989793_1991032_+	COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism]	NA|240aa|down_5|NZ_CP045154.1_1991024_1991744_+	COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]	NA|251aa|down_6|NZ_CP045154.1_1991745_1992498_+	PRK07110, PRK07110, polyketide biosynthesis enoyl-CoA hydratase; Validated	NA|263aa|down_7|NZ_CP045154.1_1992500_1993289_+	cd05233, SDR_c, classical (c) SDRs	NA|147aa|down_8|NZ_CP045154.1_1993375_1993816_+	pfam13924, Lipocalin_5, Lipocalin-like domain	NA|83aa|down_9|NZ_CP045154.1_1993853_1994102_+	PRK07117, PRK07117, acyl carrier protein; Validated
GCF_009295965.1_ASM929596v1	NZ_CP045154	Yersinia pestis strain SCPM-O-B-5935 (I-1996) chromosome, complete genome	4	2112086-2112293	2,4,2	PILER-CR,CRISPRCasFinder,CRT	no	DEDDh	cas3,csa3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	Unclear	GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA,GTTCACTGCCGCACAGGCAGCTTAGAAA	28,28,28	0	0	NA	NA	I-F:I-F:I-F	2,3,3	3	Orphan	cas3,csa3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	NA|16aa|up_8|NZ_CP045154.1_2103036_2103084_-,NA	NA|300aa|up_9|NZ_CP045154.1_2101854_2102754_-	PRK00489, hisG, ATP phosphoribosyltransferase; Reviewed	NA|16aa|up_8|NZ_CP045154.1_2103036_2103084_-	NA	NA|276aa|up_7|NZ_CP045154.1_2103459_2104287_+	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4	NA|97aa|up_6|NZ_CP045154.1_2104441_2104732_-	pfam16695, Tai4, Type VI secretion system (T6SS), amidase immunity protein	NA|332aa|up_5|NZ_CP045154.1_2105120_2106116_-	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|230aa|up_4|NZ_CP045154.1_2106112_2106802_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|298aa|up_3|NZ_CP045154.1_2106759_2107653_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|364aa|up_2|NZ_CP045154.1_2107938_2109030_+	PRK10586, PRK10586, putative oxidoreductase; Provisional	NA|153aa|up_1|NZ_CP045154.1_2109315_2109774_+	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|464aa|up_0|NZ_CP045154.1_2110199_2111591_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	DEDDh|477aa|down_0|NZ_CP045154.1_2112327_2113758_-	PRK11779, sbcB, exonuclease I; Provisional	NA|370aa|down_1|NZ_CP045154.1_2114050_2115160_+	cd05236, FAR-N_SDR_e, fatty acyl CoA reductases (FARs), extended (e) SDRs	NA|106aa|down_2|NZ_CP045154.1_2115593_2115911_+	PRK05423, PRK05423, DUF496 family protein	NA|403aa|down_3|NZ_CP045154.1_2116281_2117490_+	COG3328, COG3328, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|1051aa|down_4|NZ_CP045154.1_2117452_2120605_-	pfam11924, IAT_beta, Inverse autotransporter, beta-domain	NA|435aa|down_5|NZ_CP045154.1_2121629_2122934_+	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|141aa|down_6|NZ_CP045154.1_2122942_2123365_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|247aa|down_7|NZ_CP045154.1_2123792_2124533_+	cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs	NA|281aa|down_8|NZ_CP045154.1_2124580_2125423_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|426aa|down_9|NZ_CP045154.1_2125454_2126732_+	cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA
GCF_009295965.1_ASM929596v1	NZ_CP045154	Yersinia pestis strain SCPM-O-B-5935 (I-1996) chromosome, complete genome	5	3088686-3088895	5,3,3	CRISPRCasFinder,CRT,PILER-CR	no	cas6f,cas7f,cas5f,cas8f,cas3f,cas1	cas3,csa3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	Type I-F	TTTTCTAAGCTGCCTGTGCGGCAGTGAAC,TTTTCTAAGCTGCCTGTGCGGCAGTGAAC,TGTTCACTGCCGCACAGGCAGCTTAGAAAA	29,29,30	0	0	NA	NA	I-F:I-F:I-F	3,3,2	3	TypeI-F	cas3,csa3,DinG,DEDDh,cas6f,cas7f,cas5f,cas8f,cas3f,cas1	NA|70aa|up_9|NZ_CP045154.1_3076424_3076634_-,NA|425aa|down_1|NZ_CP045154.1_3091052_3092327_-,NA|372aa|down_2|NZ_CP045154.1_3092365_3093481_-	NA|70aa|up_9|NZ_CP045154.1_3076424_3076634_-	NA	NA|453aa|up_8|NZ_CP045154.1_3076757_3078116_+	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|168aa|up_7|NZ_CP045154.1_3078162_3078666_+	COG1795, COG1795, Formaldehyde-activating enzyme nesessary for methanogenesis [Energy    production and conversion]	NA|340aa|up_6|NZ_CP045154.1_3078676_3079696_+	cd19079, AKR_EcYajO-like, Escherichia coli YajO and similar proteins	cas6f|185aa|up_5|NZ_CP045154.1_3079773_3080328_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|335aa|up_4|NZ_CP045154.1_3080338_3081343_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|317aa|up_3|NZ_CP045154.1_3081360_3082311_-	cd09676, Csy2_I-F, CRISPR/Cas system-associated RAMP superfamily protein Csy2	cas8f|449aa|up_2|NZ_CP045154.1_3082307_3083654_-	TIGR02564, conserved_hypothetical_protein, CRISPR type I-F/YPEST-associated protein Csy1	cas3f|1096aa|up_1|NZ_CP045154.1_3084062_3087350_-	cd09673, Cas3_Cas2_I-F, CRISPR/Cas system-associated protein Cas3/Cas2	cas1|327aa|up_0|NZ_CP045154.1_3087346_3088327_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|415aa|down_0|NZ_CP045154.1_3089231_3090476_+	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]	NA|425aa|down_1|NZ_CP045154.1_3091052_3092327_-	NA	NA|372aa|down_2|NZ_CP045154.1_3092365_3093481_-	NA	NA|313aa|down_3|NZ_CP045154.1_3093603_3094542_-	pfam08950, DUF1861, Protein of unknown function (DUF1861)	NA|352aa|down_4|NZ_CP045154.1_3094568_3095624_-	cd18612, GH130_Lin0857-like, Glycoside hydrolase family 130 such as Listeria innocua beta-1,2-mannobiose phosphorylase	NA|275aa|down_5|NZ_CP045154.1_3095770_3096595_-	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism]	NA|292aa|down_6|NZ_CP045154.1_3096595_3097471_-	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism]	NA|429aa|down_7|NZ_CP045154.1_3097579_3098866_-	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]	NA|347aa|down_8|NZ_CP045154.1_3099137_3100178_+	cd06279, PBP1_LacI-like, ligand-binding domain of an uncharacterized transcription regulator from Corynebacterium glutamicum and its close homologs from other bacteria	NA|463aa|down_9|NZ_CP045154.1_3100194_3101583_+	PRK15414, PRK15414, phosphomannomutase
