assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009362995.1_ASM936299v1	NZ_CP045291	Delftia tsuruhatensis strain TR1180 chromosome, complete genome	1	4855430-4857619	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no		DinG,DEDDh,RT,WYL,csa3,Cas9_archaeal,PD-DExK,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,cas6f,cas7f,cas5f,cas8f,cas3-cas2	Orphan	GTTTCAATCCACGCGCCCGCACGGGGCGCGAC,GTTTCAATCCACGCGCCCGCACGGG,GTTTCAATCCACGCGCCCGCACGGG	32,25,25	1	1	4856962-4856995	NZ_CP045291.1_2125676-2125643	I-C:NA:NA	33,33,33	33	Orphan	DinG,DEDDh,RT,WYL,csa3,Cas9_archaeal,PD-DExK,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,cas6f,cas7f,cas5f,cas8f,cas3-cas2	NA|103aa|up_7|NZ_CP045291.1_4843232_4843541_+,NA|194aa|up_2|NZ_CP045291.1_4852363_4852945_+,NA|182aa|up_1|NZ_CP045291.1_4852907_4853453_+,NA	NA|261aa|up_9|NZ_CP045291.1_4840800_4841583_-	COG2602, COG2602, Beta-lactamase class D [Defense mechanisms]	NA|447aa|up_8|NZ_CP045291.1_4841830_4843171_+	COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism]	NA|103aa|up_7|NZ_CP045291.1_4843232_4843541_+	NA	NA|543aa|up_6|NZ_CP045291.1_4843566_4845195_-	PRK11767, PRK11767, SpoVR family protein; Provisional	NA|423aa|up_5|NZ_CP045291.1_4845191_4846460_-	pfam04285, DUF444, Protein of unknown function (DUF444)	NA|641aa|up_4|NZ_CP045291.1_4846506_4848429_-	PRK15455, PRK15455, PrkA family serine protein kinase; Provisional	NA|1118aa|up_3|NZ_CP045291.1_4848801_4852155_+	PRK11281, PRK11281, mechanosensitive channel MscK	NA|194aa|up_2|NZ_CP045291.1_4852363_4852945_+	NA	NA|182aa|up_1|NZ_CP045291.1_4852907_4853453_+	NA	NA|583aa|up_0|NZ_CP045291.1_4853461_4855210_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|470aa|down_0|NZ_CP045291.1_4857903_4859313_-	PRK11040, PRK11040, peptidase PmbA; Provisional	NA|226aa|down_1|NZ_CP045291.1_4859379_4860057_+	cd16331, YjgA-like, uncharacterized proteins similar to Escherichia coli YjgA	NA|202aa|down_2|NZ_CP045291.1_4860049_4860655_+	PRK09417, mogA, molybdenum cofactor biosynthesis protein MogA; Provisional	NA|229aa|down_3|NZ_CP045291.1_4861210_4861897_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|404aa|down_4|NZ_CP045291.1_4862218_4863430_+	cd06327, PBP1_SBP-like, periplasmic substrate-binding domain of active transport proteins (substrate binding proteins or SBPs)	NA|395aa|down_5|NZ_CP045291.1_4863620_4864805_+	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|649aa|down_6|NZ_CP045291.1_4864807_4866754_+	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|458aa|down_7|NZ_CP045291.1_4866755_4868129_+	TIGR01845, Outer_membrane_protein_OprM, efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family	NA|352aa|down_8|NZ_CP045291.1_4868168_4869224_-	cd00342, gram_neg_porins, Porins form aqueous channels for the diffusion of small hydrophillic molecules across the outer membrane	NA|116aa|down_9|NZ_CP045291.1_4869547_4869895_-	pfam05336, rhaM, L-rhamnose mutarotase
GCF_009362995.1_ASM936299v1	NZ_CP045291	Delftia tsuruhatensis strain TR1180 chromosome, complete genome	2	4879303-4881438	2,2,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	DinG,DEDDh,RT,WYL,csa3,Cas9_archaeal,PD-DExK,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,cas6f,cas7f,cas5f,cas8f,cas3-cas2	 Type I-U?,Type I-C,Type I-U	GTTTCAATCCACGCGCCCGCACGGGGCGCGAC,GTTTCAATCCACGCGCCCGCACGGG,GTTTCAATCCACGCGCCCGCACGGG	32,25,25	0	0	NA	NA	I-C:NA:NA	32,32,31	32	TypeI-U?,TypeI-C,TypeI-U	DinG,DEDDh,RT,WYL,csa3,Cas9_archaeal,PD-DExK,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,cas6f,cas7f,cas5f,cas8f,cas3-cas2	NA,NA	NA|116aa|up_9|NZ_CP045291.1_4869547_4869895_-	pfam05336, rhaM, L-rhamnose mutarotase	NA|259aa|up_8|NZ_CP045291.1_4869911_4870688_-	PRK08628, PRK08628, SDR family oxidoreductase	NA|304aa|up_7|NZ_CP045291.1_4870704_4871616_-	COG3618, COG3618, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|426aa|up_6|NZ_CP045291.1_4871619_4872897_-	cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA	NA|297aa|up_5|NZ_CP045291.1_4872904_4873795_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|250aa|up_4|NZ_CP045291.1_4873813_4874563_-	cd05368, DHRS6_like_SDR_c, human DHRS6-like, classical (c) SDRs	NA|339aa|up_3|NZ_CP045291.1_4874616_4875633_-	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]	NA|517aa|up_2|NZ_CP045291.1_4875622_4877173_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|335aa|up_1|NZ_CP045291.1_4877169_4878174_-	cd01536, PBP1_ABC_sugar_binding-like, periplasmic sugar-binding domain of active transport systems that are members of the type 1 periplasmic binding protein (PBP1) superfamily	NA|267aa|up_0|NZ_CP045291.1_4878452_4879253_+	COG1414, IclR, Transcriptional regulator [Transcription]	cas2|97aa|down_0|NZ_CP045291.1_4881621_4881912_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|347aa|down_1|NZ_CP045291.1_4882015_4883056_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|219aa|down_2|NZ_CP045291.1_4883040_4883697_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas7|294aa|down_3|NZ_CP045291.1_4883724_4884606_-	TIGR02589, conserved_hypothetical_protein, CRISPR-associated protein Cas7/Csd2, subtype I-C/DVULG	cas8c|611aa|down_4|NZ_CP045291.1_4884602_4886435_-	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas5|225aa|down_5|NZ_CP045291.1_4886431_4887106_-	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas3|748aa|down_6|NZ_CP045291.1_4887147_4889391_-	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3	NA|648aa|down_7|NZ_CP045291.1_4889565_4891509_-	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional	NA|221aa|down_8|NZ_CP045291.1_4891963_4892626_-	cd02136, PnbA_NfnB-like, nitroreductase similar to Mycobacterium smegmatis NfnB	NA|275aa|down_9|NZ_CP045291.1_4892688_4893513_-	TIGR01172, Serine_acetyltransferase, serine O-acetyltransferase
GCF_009362995.1_ASM936299v1	NZ_CP045291	Delftia tsuruhatensis strain TR1180 chromosome, complete genome	3	5139956-5140374	3	CRISPRCasFinder	no		DinG,DEDDh,RT,WYL,csa3,Cas9_archaeal,PD-DExK,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,cas6f,cas7f,cas5f,cas8f,cas3-cas2	Orphan	GCGGCCTTGGCTTCCGCTGCCTTGGC	26	3	5	5140174-5140192|5140174-5140192|5140219-5140237|5140219-5140237|5140264-5140282	NZ_CP045291.1_277759-277777|NZ_CP045291.1_392982-392964|NZ_CP045291.1_4889635-4889653|NZ_CP045291.1_5958364-5958382|NZ_CP045291.1_2208418-2208400	NA	7	7	Orphan	DinG,DEDDh,RT,WYL,csa3,Cas9_archaeal,PD-DExK,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,cas6f,cas7f,cas5f,cas8f,cas3-cas2	NA|98aa|up_5|NZ_CP045291.1_5133839_5134133_+,NA|130aa|up_1|NZ_CP045291.1_5137684_5138074_+,NA	NA|292aa|up_9|NZ_CP045291.1_5129753_5130629_+	cd10938, CE4_HpPgdA_like, Catalytic domain of Helicobacter pylori peptidoglycan deacetylase (HpPgdA) and similar proteins	NA|482aa|up_8|NZ_CP045291.1_5130657_5132103_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|259aa|up_7|NZ_CP045291.1_5132110_5132887_+	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG	NA|253aa|up_6|NZ_CP045291.1_5132898_5133657_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|98aa|up_5|NZ_CP045291.1_5133839_5134133_+	NA	NA|348aa|up_4|NZ_CP045291.1_5134129_5135173_+	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|397aa|up_3|NZ_CP045291.1_5135186_5136377_+	cd13588, PBP2_polyamine_1, The periplasmic-binding component of an uncharacterized ABC transporter involved in uptake of polyamines; contains the type 2 periplasmic binding fold	NA|351aa|up_2|NZ_CP045291.1_5136440_5137493_+	COG1802, GntR, Transcriptional regulators [Transcription]	NA|130aa|up_1|NZ_CP045291.1_5137684_5138074_+	NA	NA|503aa|up_0|NZ_CP045291.1_5138086_5139595_-	pfam03734, YkuD, L,D-transpeptidase catalytic domain	NA|1654aa|down_0|NZ_CP045291.1_5141412_5146374_+	PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional	NA|175aa|down_1|NZ_CP045291.1_5146456_5146981_+	TIGR02802, Peptidoglycan-associated_lipoprotein, peptidoglycan-associated lipoprotein	NA|1054aa|down_2|NZ_CP045291.1_5147117_5150279_+	COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell envelope biogenesis, outer membrane]	NA|621aa|down_3|NZ_CP045291.1_5150378_5152241_+	COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]	NA|459aa|down_4|NZ_CP045291.1_5152237_5153614_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|578aa|down_5|NZ_CP045291.1_5153613_5155347_+	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family	NA|59aa|down_6|NZ_CP045291.1_5155445_5155622_+	COG3847, Flp, Flp pilus assembly protein, pilin Flp [Intracellular trafficking and secretion]	NA|59aa|down_7|NZ_CP045291.1_5155731_5155908_+	COG3847, Flp, Flp pilus assembly protein, pilin Flp [Intracellular trafficking and secretion]	NA|195aa|down_8|NZ_CP045291.1_5155910_5156495_+	pfam01478, Peptidase_A24, Type IV leader peptidase family	NA|349aa|down_9|NZ_CP045291.1_5156687_5157734_+	TIGR03177, pilus_cpaB, Flp pilus assembly protein CpaB
GCF_009362995.1_ASM936299v1	NZ_CP045291	Delftia tsuruhatensis strain TR1180 chromosome, complete genome	4	6027128-6029799	3,4,3	PILER-CR,CRISPRCasFinder,CRT	no	cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1	DinG,DEDDh,RT,WYL,csa3,Cas9_archaeal,PD-DExK,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,cas6f,cas7f,cas5f,cas8f,cas3-cas2	Type I-F	TTTCTGAGCTGCCTATGCGGCAGCGAAC,TTTCTGAGCTGCCTATGCGGCAGCGAAC,TTTCTGAGCTGCCTATGCGGCAGCGAAC	28,28,28	1	1	6029740-6029771	NZ_CP045291.1_3679436-3679467	I-F:I-F:I-F	44,44,44	44	TypeI-F	DinG,DEDDh,RT,WYL,csa3,Cas9_archaeal,PD-DExK,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,cas6f,cas7f,cas5f,cas8f,cas3-cas2	NA|135aa|up_0|NZ_CP045291.1_6026685_6027090_+,NA	NA|239aa|up_9|NZ_CP045291.1_6019286_6020003_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|362aa|up_8|NZ_CP045291.1_6020010_6021096_-	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB	NA|191aa|up_7|NZ_CP045291.1_6021103_6021676_-	PRK00116, ruvA, Holliday junction branch migration protein RuvA	NA|324aa|up_6|NZ_CP045291.1_6021801_6022773_+	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]	NA|153aa|up_5|NZ_CP045291.1_6022849_6023308_+	PRK13963, PRK13963, rRNA maturation RNase YbeY	NA|329aa|up_4|NZ_CP045291.1_6023332_6024319_-	cd08288, MDR_yhdh, Yhdh putative quinone oxidoreductases	NA|102aa|up_3|NZ_CP045291.1_6024937_6025243_+	cd05466, PBP2_LTTR_substrate, The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily	NA|253aa|up_2|NZ_CP045291.1_6025433_6026192_+	pfam01925, TauE, Sulfite exporter TauE/SafE	NA|122aa|up_1|NZ_CP045291.1_6026202_6026568_-	PHA01513, mnt, Mnt	NA|135aa|up_0|NZ_CP045291.1_6026685_6027090_+	NA	cas6f|189aa|down_0|NZ_CP045291.1_6029929_6030496_-	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4)	cas7f|343aa|down_1|NZ_CP045291.1_6030501_6031530_-	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3)	cas5f|363aa|down_2|NZ_CP045291.1_6031584_6032673_-	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2)	cas8f|469aa|down_3|NZ_CP045291.1_6032669_6034076_-	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1	NA|104aa|down_4|NZ_CP045291.1_6034579_6034891_+	TIGR02607, Virulence-associated_protein_I, addiction module antidote protein, HigA family	cas3-cas2|1163aa|down_5|NZ_CP045291.1_6034894_6038383_-	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST	cas1|341aa|down_6|NZ_CP045291.1_6038379_6039402_-	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST	NA|592aa|down_7|NZ_CP045291.1_6039517_6041293_-	PRK06156, PRK06156, dipeptidase	NA|157aa|down_8|NZ_CP045291.1_6041415_6041886_-	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional	NA|337aa|down_9|NZ_CP045291.1_6041882_6042893_-	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
