The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP045416	Pseudomonas sp. THAF7b chromosome, complete genome	4522538	52945	63840	4522538		Bacillus_phage(83.33%)	6	NA	NA
WP_152480594.1|52945_55825_-	CHASE3 domain-containing protein	NA	W8CYF6	Bacillus_phage	34.3	1.4e-28
WP_152480595.1|55957_57595_-	diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	34.9	2.8e-18
WP_152480596.1|57587_57974_-	response regulator	NA	W8CYM9	Bacillus_phage	33.9	7.4e-10
WP_152480597.1|57973_60385_-	PAS domain S-box protein	NA	W8CYF6	Bacillus_phage	35.5	5.4e-26
WP_110778587.1|60460_60847_-	response regulator	NA	W8CYM9	Bacillus_phage	35.0	3.5e-12
WP_152480598.1|60891_63840_-	PAS domain S-box protein	NA	A0A1V0SGX0	Hokovirus	27.8	4.0e-23
>prophage 2
NZ_CP045416	Pseudomonas sp. THAF7b chromosome, complete genome	4522538	91107	99589	4522538		Escherichia_phage(33.33%)	7	NA	NA
WP_063540329.1|91107_92022_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	34.5	5.4e-27
WP_063540330.1|92018_92564_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.4	2.2e-52
WP_063540331.1|92560_93433_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.2	5.1e-107
WP_063540332.1|93429_94500_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	53.6	3.1e-98
WP_081253729.1|94777_95722_+	sensor domain-containing diguanylate cyclase	NA	A0A127AWB9	Bacillus_phage	38.7	3.3e-19
WP_152480603.1|95718_96846_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_152480604.1|96847_99589_-	ribosome-associated ATPase/putative transporter RbbA	NA	A0A2H4PQG7	Staphylococcus_phage	32.7	4.4e-24
>prophage 3
NZ_CP045416	Pseudomonas sp. THAF7b chromosome, complete genome	4522538	634350	691933	4522538	transposase,integrase	Burkholderia_virus(11.11%)	51	660857:660873	697826:697842
WP_076611849.1|634350_635573_-|transposase	IS3-like element ISPst4 family transposase	transposase	Q8W6R2	Burkholderia_virus	75.8	5.8e-117
WP_152480784.1|636022_637834_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152480785.1|637830_638478_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152480786.1|638652_640758_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152480787.1|641094_641451_+	H-NS histone family protein	NA	NA	NA	NA	NA
WP_152480788.1|641504_641906_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_152480789.1|642152_642905_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152480790.1|644854_645799_+	chromate resistance protein	NA	NA	NA	NA	NA
WP_152480791.1|645791_647156_+	chromate efflux transporter	NA	A0A219VHC2	Ochrobactrum_phage	64.0	5.6e-28
WP_152480792.1|647166_647493_+	sulfurtransferase	NA	NA	NA	NA	NA
WP_081262884.1|647529_648255_-	conjugal transfer protein TraX	NA	NA	NA	NA	NA
WP_042924888.1|648242_648683_-	DedA family protein	NA	NA	NA	NA	NA
WP_152480793.1|648686_649820_-	nickel/cobalt efflux transporter RcnA	NA	NA	NA	NA	NA
WP_152480794.1|649832_650120_-	metal-sensing transcriptional repressor MreA	NA	NA	NA	NA	NA
WP_152480795.1|650237_650597_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152480796.1|650644_651382_+	HupE/UreJ family protein	NA	NA	NA	NA	NA
WP_152480797.1|651394_652057_+	transmembrane anchor protein	NA	NA	NA	NA	NA
WP_152480798.1|652544_653312_-	NYN domain-containing protein	NA	A0A2P0VNQ4	Tetraselmis_virus	28.9	8.9e-07
WP_031642939.1|653642_654671_-|transposase	IS30-like element ISPsp7 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.5	4.1e-47
WP_003282265.1|655114_656110_+|transposase	IS5-like element ISPsp6 family transposase	transposase	E5E3P6	Burkholderia_phage	58.9	8.3e-98
WP_041014138.1|656346_656688_-	DUF45 domain-containing protein	NA	NA	NA	NA	NA
WP_034032494.1|656686_657886_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_041014139.1|658977_659616_+	AAA family ATPase	NA	K7R2R7	Vibrio_phage	36.7	2.5e-31
WP_034032526.1|659612_659885_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041014140.1|659881_660415_+	DUF2840 domain-containing protein	NA	NA	NA	NA	NA
WP_041014141.1|660411_661008_+	S26 family signal peptidase	NA	NA	NA	NA	NA
660857:660873	attL	CCTGGCAGCAGTGCCGC	NA	NA	NA	NA
WP_041014142.1|661468_663460_+	relaxase/mobilization nuclease and DUF3363 domain-containing protein	NA	NA	NA	NA	NA
WP_020750883.1|663568_663967_+	BlaI/MecI/CopY family transcriptional regulator	NA	NA	NA	NA	NA
WP_020750882.1|663966_664962_+	M56 family metallopeptidase	NA	NA	NA	NA	NA
WP_003111094.1|665102_666350_+	TolC family protein	NA	NA	NA	NA	NA
WP_003111093.1|666346_667576_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_041014144.1|667586_670727_+	CusA/CzcA family heavy metal efflux RND transporter	NA	NA	NA	NA	NA
WP_041014167.1|673161_673497_-	hypothetical protein	NA	NA	NA	NA	NA
WP_158525227.1|673505_674204_-	N-6 DNA methylase	NA	NA	NA	NA	NA
WP_041014169.1|674184_674562_-	hypothetical protein	NA	NA	NA	NA	NA
WP_172974154.1|676081_676234_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152480799.1|676223_676940_+	DUF45 domain-containing protein	NA	NA	NA	NA	NA
WP_085989276.1|677077_678227_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	64.1	1.1e-98
WP_152480800.1|678285_678867_+	lecithin retinol acyltransferase family protein	NA	NA	NA	NA	NA
WP_152480801.1|679005_679413_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152482044.1|679628_679838_-	DUF2384 domain-containing protein	NA	NA	NA	NA	NA
WP_096780445.1|679907_680114_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096780446.1|680586_680937_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041014175.1|681021_681462_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_152480802.1|681458_682733_+	translesion error-prone DNA polymerase V subunit UmuC	NA	I6RSM4	Salmonella_phage	47.2	7.6e-104
WP_152480803.1|682910_683948_+	hypothetical protein	NA	NA	NA	NA	NA
WP_152480804.1|684001_686167_-	AAA family ATPase	NA	A0A0K2FLP8	Brevibacillus_phage	27.0	2.9e-39
WP_042928085.1|686163_686637_-	hypothetical protein	NA	NA	NA	NA	NA
WP_152480805.1|686623_687292_-	hypothetical protein	NA	NA	NA	NA	NA
WP_152480806.1|687288_690525_-	hypothetical protein	NA	NA	NA	NA	NA
WP_152482045.1|690517_691933_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
697826:697842	attR	CCTGGCAGCAGTGCCGC	NA	NA	NA	NA
>prophage 4
NZ_CP045416	Pseudomonas sp. THAF7b chromosome, complete genome	4522538	2005647	2019437	4522538		uncultured_Caudovirales_phage(75.0%)	12	NA	NA
WP_152481236.1|2005647_2008182_+	pyrroloquinoline quinone biosynthesis protein PqqF	NA	A0A1V0SJA4	Klosneuvirus	22.3	8.3e-17
WP_063543182.1|2008431_2009619_+	porin	NA	NA	NA	NA	NA
WP_152481237.1|2009944_2011108_+	FIST C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_152481238.1|2011037_2013677_+	PAS-domain containing protein	NA	A0A2K9L5I4	Tupanvirus	28.0	5.8e-13
WP_152481239.1|2013733_2014729_-	glutathione S-transferase C-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_152481240.1|2014813_2015797_-	glycosyl transferase family protein	NA	A0A2H4JBY5	uncultured_Caudovirales_phage	75.2	1.7e-143
WP_125872677.1|2015793_2016126_-	TusE/DsrC/DsvC family sulfur relay protein	NA	A0A2H4J8B6	uncultured_Caudovirales_phage	74.3	4.5e-40
WP_152481241.1|2016122_2016425_-	sulfurtransferase complex subunit TusB	NA	A0A2H4JG28	uncultured_Caudovirales_phage	61.0	3.7e-25
WP_152481242.1|2016424_2016784_-	sulfurtransferase complex subunit TusC	NA	A0A2H4J8C0	uncultured_Caudovirales_phage	60.0	4.9e-32
WP_110778992.1|2016783_2017176_-	sulfurtransferase complex subunit TusD	NA	A0A2H4JA39	uncultured_Caudovirales_phage	71.3	2.6e-47
WP_152481243.1|2017390_2018659_+	MFS transporter	NA	NA	NA	NA	NA
WP_003284506.1|2018768_2019437_-	Bax inhibitor-1/YccA family protein	NA	A0A2H4JFM9	uncultured_Caudovirales_phage	77.6	1.2e-87
>prophage 5
NZ_CP045416	Pseudomonas sp. THAF7b chromosome, complete genome	4522538	2180945	2248637	4522538	integrase	Brazilian_cedratvirus(25.0%)	56	2184398:2184412	2249073:2249087
WP_028688847.1|2180945_2182064_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_023628979.1|2182181_2183171_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_071576115.1|2183469_2183754_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023048077.1|2184106_2184778_-	hypothetical protein	NA	NA	NA	NA	NA
2184398:2184412	attL	CCCGACGCTTGCACT	NA	NA	NA	NA
WP_023048078.1|2184774_2185590_-	dioxygenase	NA	NA	NA	NA	NA
WP_023048079.1|2186052_2186952_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023048080.1|2187114_2187471_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_023628975.1|2187565_2188360_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_023048084.1|2189134_2189539_-	DoxX family protein	NA	NA	NA	NA	NA
WP_023048085.1|2189622_2190252_-	NAD(P)-binding domain-containing protein	NA	NA	NA	NA	NA
WP_023048086.1|2190355_2191300_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023048087.1|2191339_2191537_-	4-oxalocrotonate tautomerase family protein	NA	NA	NA	NA	NA
WP_023048089.1|2192440_2193595_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA	NA
WP_023048090.1|2193656_2194523_-	IclR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023628973.1|2194759_2195545_+	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA	NA
WP_023048092.1|2195548_2197090_+	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_023048093.1|2197099_2198302_+	3-oxoadipyl-CoA thiolase	NA	NA	NA	NA	NA
WP_023048094.1|2198328_2199567_+	CoA transferase	NA	NA	NA	NA	NA
WP_023048095.1|2199623_2200388_+	electron transfer flavoprotein subunit beta/FixA family protein	NA	NA	NA	NA	NA
WP_023662939.1|2200388_2201333_+	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA	NA
WP_041506134.1|2201979_2203341_+	allantoin permease	NA	NA	NA	NA	NA
WP_031637015.1|2203494_2204667_+	hypothetical protein	NA	NA	NA	NA	NA
WP_052062200.1|2205166_2206540_+	group II intron reverse transcriptase/maturase	NA	NA	NA	NA	NA
WP_023662937.1|2206840_2208586_+	hydantoinase B/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_023662936.1|2208621_2210712_+	hydantoinase/oxoprolinase family protein	NA	NA	NA	NA	NA
WP_103470364.1|2210809_2211769_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_023048102.1|2212146_2212866_-	DNA-binding transcriptional regulator CsiR	NA	NA	NA	NA	NA
WP_023628647.1|2213058_2214036_+	carbon starvation induced protein CsiD	NA	NA	NA	NA	NA
WP_023048104.1|2214120_2215350_+	L-2-hydroxyglutarate oxidase	NA	NA	NA	NA	NA
WP_023048105.1|2215588_2216956_+	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_063542906.1|2217065_2218517_+	NADP-dependent succinate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023048107.1|2219641_2220550_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_023048108.1|2220546_2221305_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	28.0	7.4e-14
WP_024075421.1|2221304_2222021_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	26.0	2.4e-14
WP_024075420.1|2222038_2222953_+	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	38.9	2.4e-14
WP_023630205.1|2223321_2224773_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_078451698.1|2224995_2226072_-	DUF2955 domain-containing protein	NA	NA	NA	NA	NA
WP_023663266.1|2226061_2227123_-	HlyD family secretion protein	NA	NA	NA	NA	NA
WP_023629250.1|2227270_2228206_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_023629249.1|2228362_2228590_+	DUF2790 domain-containing protein	NA	NA	NA	NA	NA
WP_023629248.1|2228663_2229566_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_024075419.1|2229693_2230983_+	salicylate 1-monooxygenase	NA	NA	NA	NA	NA
WP_023629719.1|2231056_2232403_+	aromatic acid/H+ symport family MFS transporter	NA	NA	NA	NA	NA
WP_028688854.1|2233181_2234474_-|integrase	integrase	integrase	NA	NA	NA	NA
WP_063542901.1|2234918_2235752_+	CoA ester lyase	NA	NA	NA	NA	NA
WP_152481286.1|2236346_2236553_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_063542897.1|2236655_2237246_+	hypothetical protein	NA	NA	NA	NA	NA
WP_063542895.1|2237242_2238643_+	DEAD/DEAH box helicase family protein	NA	I4AZM6	Saccharomonospora_phage	32.5	8.6e-40
WP_063542891.1|2238733_2239036_+	hypothetical protein	NA	NA	NA	NA	NA
WP_063542887.1|2239434_2240037_+	type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein	NA	NA	NA	NA	NA
WP_152481287.1|2240718_2241807_-	alanine racemase	NA	NA	NA	NA	NA
WP_063542883.1|2241867_2243166_-	D-amino acid dehydrogenase	NA	NA	NA	NA	NA
WP_081253783.1|2243534_2243894_-	FCD domain-containing protein	NA	NA	NA	NA	NA
WP_073865966.1|2244289_2245246_-|integrase	integrase	integrase	NA	NA	NA	NA
WP_160328792.1|2245923_2247093_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_034054167.1|2247092_2248637_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
2249073:2249087	attR	AGTGCAAGCGTCGGG	NA	NA	NA	NA
>prophage 6
NZ_CP045416	Pseudomonas sp. THAF7b chromosome, complete genome	4522538	3004377	3013371	4522538	transposase,tRNA	uncultured_virus(16.67%)	10	NA	NA
WP_063539761.1|3004377_3005430_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	28.5	3.0e-05
WP_152482086.1|3005433_3006039_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_152481534.1|3006105_3006630_-	crossover junction endodeoxyribonuclease RuvC	NA	G3MA90	Bacillus_virus	26.2	3.0e-06
WP_152481535.1|3006792_3007542_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_152481536.1|3007691_3009467_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SIS0	Klosneuvirus	27.8	8.7e-13
WP_011913917.1|3009813_3010284_+	DNA starvation/stationary phase protection protein	NA	A0A2H4N7L5	Lake_Baikal_phage	36.4	1.1e-20
WP_169917672.1|3010909_3011137_+	cold shock domain-containing protein	NA	A0A1X9IGI9	Lactococcus_phage	50.0	6.7e-11
WP_014597223.1|3011182_3011389_-	SlyX family protein	NA	NA	NA	NA	NA
WP_063539756.1|3011391_3011814_-	HIT domain-containing protein	NA	NA	NA	NA	NA
WP_076611849.1|3012148_3013371_-|transposase	IS3-like element ISPst4 family transposase	transposase	Q8W6R2	Burkholderia_virus	75.8	5.8e-117
