assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009429145.1_ASM942914v1	NZ_CP045480	Amycolatopsis sp. YIM 10 chromosome, complete genome	1	722724-722803	1	CRISPRCasFinder	no	WYL	WYL,cas3,csa3,casR,DEDDh,cas4,RT,DinG	Unclear	CGCGACTGCGGGTAGCTCTGCTC	23	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,casR,DEDDh,cas4,RT,DinG	NA|77aa|up_3|NZ_CP045480.1_719629_719860_-,NA	NA|125aa|up_9|NZ_CP045480.1_714274_714649_-	PRK11770, PRK11770, YccF domain-containing protein	NA|257aa|up_8|NZ_CP045480.1_714675_715446_-	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only]	NA|548aa|up_7|NZ_CP045480.1_715529_717173_+	PRK08315, PRK08315, AMP-binding domain protein; Validated	NA|321aa|up_6|NZ_CP045480.1_717368_718331_-	PRK08326, PRK08326, R2-like ligand-binding oxidase	NA|211aa|up_5|NZ_CP045480.1_718343_718976_-	pfam18556, TetR_C_35, Bacterial Tetracyclin repressor, C-terminal domain	NA|206aa|up_4|NZ_CP045480.1_719031_719649_+	COG0546, Gph, Predicted phosphatases [General function prediction only]	NA|77aa|up_3|NZ_CP045480.1_719629_719860_-	NA	NA|129aa|up_2|NZ_CP045480.1_720025_720412_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|166aa|up_1|NZ_CP045480.1_720408_720906_-	pfam10969, DUF2771, Protein of unknown function (DUF2771)	NA|586aa|up_0|NZ_CP045480.1_720916_722674_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|247aa|down_0|NZ_CP045480.1_723139_723880_-	pfam05096, Glu_cyclase_2, Glutamine cyclotransferase	NA|264aa|down_1|NZ_CP045480.1_723941_724733_+	pfam11228, DUF3027, Protein of unknown function (DUF3027)	NA|921aa|down_2|NZ_CP045480.1_724716_727479_+	COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]	NA|362aa|down_3|NZ_CP045480.1_727540_728626_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|395aa|down_4|NZ_CP045480.1_728622_729807_-	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]	WYL|346aa|down_5|NZ_CP045480.1_729838_730876_+	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|105aa|down_6|NZ_CP045480.1_730814_731129_-	pfam10745, DUF2530, Protein of unknown function (DUF2530)	NA|481aa|down_7|NZ_CP045480.1_731155_732598_+	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and    metabolism]	NA|144aa|down_8|NZ_CP045480.1_732642_733074_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|447aa|down_9|NZ_CP045480.1_733091_734432_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters
GCF_009429145.1_ASM942914v1	NZ_CP045480	Amycolatopsis sp. YIM 10 chromosome, complete genome	2	1585212-1585325	2	CRISPRCasFinder	no		WYL,cas3,csa3,casR,DEDDh,cas4,RT,DinG	Orphan	GTCGCCGTTGTTGGCGCGGGCGGTGAGGGT	30	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,casR,DEDDh,cas4,RT,DinG	NA|169aa|up_2|NZ_CP045480.1_1583429_1583936_+,NA|160aa|up_1|NZ_CP045480.1_1583981_1584461_-,NA|131aa|up_0|NZ_CP045480.1_1584457_1584850_-,NA|159aa|down_0|NZ_CP045480.1_1586649_1587126_+,NA|46aa|down_1|NZ_CP045480.1_1587387_1587525_-,NA|102aa|down_2|NZ_CP045480.1_1588053_1588359_+,NA|84aa|down_3|NZ_CP045480.1_1588346_1588598_+,NA|276aa|down_4|NZ_CP045480.1_1588666_1589494_-,NA|134aa|down_5|NZ_CP045480.1_1589493_1589895_-	NA|194aa|up_9|NZ_CP045480.1_1574271_1574853_+	pfam02592, Vut_1, Putative vitamin uptake transporter	NA|203aa|up_8|NZ_CP045480.1_1575742_1576351_+	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|223aa|up_7|NZ_CP045480.1_1577614_1578283_+	pfam07508, Recombinase, Recombinase	NA|272aa|up_6|NZ_CP045480.1_1578512_1579328_+	cd01713, PAPS_reductase, This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase	NA|400aa|up_5|NZ_CP045480.1_1579801_1581001_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|135aa|up_4|NZ_CP045480.1_1581205_1581610_+	pfam11774, Lsr2, Lsr2	NA|283aa|up_3|NZ_CP045480.1_1581832_1582681_+	pfam04672, Methyltransf_19, S-adenosyl methyltransferase	NA|169aa|up_2|NZ_CP045480.1_1583429_1583936_+	NA	NA|160aa|up_1|NZ_CP045480.1_1583981_1584461_-	NA	NA|131aa|up_0|NZ_CP045480.1_1584457_1584850_-	NA	NA|159aa|down_0|NZ_CP045480.1_1586649_1587126_+	NA	NA|46aa|down_1|NZ_CP045480.1_1587387_1587525_-	NA	NA|102aa|down_2|NZ_CP045480.1_1588053_1588359_+	NA	NA|84aa|down_3|NZ_CP045480.1_1588346_1588598_+	NA	NA|276aa|down_4|NZ_CP045480.1_1588666_1589494_-	NA	NA|134aa|down_5|NZ_CP045480.1_1589493_1589895_-	NA	NA|988aa|down_6|NZ_CP045480.1_1589928_1592892_-	pfam12770, CHAT, CHAT domain	NA|892aa|down_7|NZ_CP045480.1_1593381_1596057_-	cd15831, BTAD, Bacterial Transcriptional Activation (BTA) domain	NA|199aa|down_8|NZ_CP045480.1_1596055_1596652_+	cd00161, RICIN, Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication	NA|293aa|down_9|NZ_CP045480.1_1597387_1598266_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
GCF_009429145.1_ASM942914v1	NZ_CP045480	Amycolatopsis sp. YIM 10 chromosome, complete genome	3	2640703-2640798	3	CRISPRCasFinder	no		WYL,cas3,csa3,casR,DEDDh,cas4,RT,DinG	Orphan	CATGGAGGCGGCTCGTGGCTGAC	23	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,casR,DEDDh,cas4,RT,DinG	NA,NA|69aa|down_9|NZ_CP045480.1_2652487_2652694_-	NA|489aa|up_9|NZ_CP045480.1_2625853_2627320_+	COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]	NA|244aa|up_8|NZ_CP045480.1_2627316_2628048_+	PRK14968, PRK14968, putative methyltransferase; Provisional	NA|342aa|up_7|NZ_CP045480.1_2628047_2629073_+	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase	NA|254aa|up_6|NZ_CP045480.1_2629069_2629831_+	pfam05721, PhyH, Phytanoyl-CoA dioxygenase (PhyH)	NA|271aa|up_5|NZ_CP045480.1_2629845_2630658_+	pfam04016, DUF364, Putative heavy-metal chelation	NA|390aa|up_4|NZ_CP045480.1_2630757_2631927_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|398aa|up_3|NZ_CP045480.1_2632277_2633471_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|135aa|up_2|NZ_CP045480.1_2633467_2633872_-	TIGR00026, Hypothetical_protein_Rv1261c/MT1299/Mb1292c	NA|255aa|up_1|NZ_CP045480.1_2633987_2634752_+	pfam02909, TetR_C, Tetracyclin repressor, C-terminal all-alpha domain	NA|344aa|up_0|NZ_CP045480.1_2634770_2635802_+	PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed	NA|356aa|down_0|NZ_CP045480.1_2642530_2643598_-	cd08948, 5beta-POR_like_SDR_a, progesterone 5-beta-reductase-like proteins (5beta-POR), atypical (a) SDRs	NA|301aa|down_1|NZ_CP045480.1_2643669_2644572_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|125aa|down_2|NZ_CP045480.1_2644587_2644962_-	COG4991, COG4991, Uncharacterized protein with a bacterial SH3 domain homologue [Function unknown]	NA|296aa|down_3|NZ_CP045480.1_2645227_2646115_+	COG3591, COG3591, V8-like Glu-specific endopeptidase [Amino acid transport and metabolism]	NA|460aa|down_4|NZ_CP045480.1_2646222_2647602_+	pfam01474, DAHP_synth_2, Class-II DAHP synthetase family	NA|442aa|down_5|NZ_CP045480.1_2647624_2648950_-	TIGR02946, Putative_diacyglycerol_O-acyltransferase_Mb3115, acyltransferase, WS/DGAT/MGAT	NA|193aa|down_6|NZ_CP045480.1_2649206_2649785_-	TIGR03086, TIGR03086, TIGR03086 family protein	NA|337aa|down_7|NZ_CP045480.1_2649804_2650815_-	PRK08241, PRK08241, RNA polymerase subunit sigma-70	NA|510aa|down_8|NZ_CP045480.1_2650961_2652491_-	cd03399, SPFH_flotillin, Flotillin or reggie family; SPFH (stomatin, prohibitin, flotillin, and HflK/C) superfamily	NA|69aa|down_9|NZ_CP045480.1_2652487_2652694_-	NA
GCF_009429145.1_ASM942914v1	NZ_CP045480	Amycolatopsis sp. YIM 10 chromosome, complete genome	4	6007732-6007826	4	CRISPRCasFinder	no		WYL,cas3,csa3,casR,DEDDh,cas4,RT,DinG	Orphan	AGCCCGCAGATGCCGGGCATGCC	23	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,casR,DEDDh,cas4,RT,DinG	NA|133aa|up_0|NZ_CP045480.1_6006472_6006871_+,NA|236aa|down_5|NZ_CP045480.1_6022392_6023100_+,NA|52aa|down_8|NZ_CP045480.1_6027461_6027617_+,NA|670aa|down_9|NZ_CP045480.1_6028112_6030122_+	NA|204aa|up_9|NZ_CP045480.1_5996618_5997230_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|300aa|up_8|NZ_CP045480.1_5997299_5998199_+	PRK03635, PRK03635, ArgP/LysG family DNA-binding transcriptional regulator	NA|197aa|up_7|NZ_CP045480.1_5998244_5998835_-	TIGR03618, Rv1155_F420, PPOX class probable F420-dependent enzyme	NA|413aa|up_6|NZ_CP045480.1_5998868_6000107_+	cd14792, GH27, glycosyl hydrolase family 27 (GH27)	NA|391aa|up_5|NZ_CP045480.1_6000118_6001291_-	COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]	NA|222aa|up_4|NZ_CP045480.1_6001624_6002290_+	pfam13628, DUF4142, Domain of unknown function (DUF4142)	NA|273aa|up_3|NZ_CP045480.1_6002299_6003118_-	cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs	NA|196aa|up_2|NZ_CP045480.1_6003167_6003755_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|798aa|up_1|NZ_CP045480.1_6003925_6006319_+	pfam13560, HTH_31, Helix-turn-helix domain	NA|133aa|up_0|NZ_CP045480.1_6006472_6006871_+	NA	NA|257aa|down_0|NZ_CP045480.1_6008690_6009461_+	pfam14011, ESX-1_EspG, EspG family	NA|202aa|down_1|NZ_CP045480.1_6010524_6011130_+	pfam02575, YbaB_DNA_bd, YbaB/EbfC DNA-binding family	NA|1611aa|down_2|NZ_CP045480.1_6011148_6015981_+	COG3209, RhsA, Rhs family protein [Cell envelope biogenesis, outer membrane]	NA|1128aa|down_3|NZ_CP045480.1_6016675_6020059_-	TIGR03491, TIGR03491, RecB family nuclease, putative, TM0106 family	NA|468aa|down_4|NZ_CP045480.1_6020436_6021840_-	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain	NA|236aa|down_5|NZ_CP045480.1_6022392_6023100_+	NA	NA|410aa|down_6|NZ_CP045480.1_6025346_6026576_+	TIGR04474, conserved_hypothetical_protein, three-Cys-motif partner protein	NA|254aa|down_7|NZ_CP045480.1_6026550_6027312_-	pfam07505, DUF5131, Protein of unknown function (DUF5131)	NA|52aa|down_8|NZ_CP045480.1_6027461_6027617_+	NA	NA|670aa|down_9|NZ_CP045480.1_6028112_6030122_+	NA
GCF_009429145.1_ASM942914v1	NZ_CP045480	Amycolatopsis sp. YIM 10 chromosome, complete genome	5	6519010-6519368	5	CRISPRCasFinder	no		WYL,cas3,csa3,casR,DEDDh,cas4,RT,DinG	Orphan	GCTGGCCCGGCTGCGATTGCCCCGG	25	0	0	NA	NA	NA	5	5	Orphan	WYL,cas3,csa3,casR,DEDDh,cas4,RT,DinG	NA|116aa|up_8|NZ_CP045480.1_6511097_6511445_+,NA|110aa|up_6|NZ_CP045480.1_6512759_6513089_-,NA	NA|267aa|up_9|NZ_CP045480.1_6510300_6511101_+	pfam05114, DUF692, Protein of unknown function (DUF692)	NA|116aa|up_8|NZ_CP045480.1_6511097_6511445_+	NA	NA|424aa|up_7|NZ_CP045480.1_6511415_6512687_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|110aa|up_6|NZ_CP045480.1_6512759_6513089_-	NA	NA|231aa|up_5|NZ_CP045480.1_6513139_6513832_-	pfam06778, Chlor_dismutase, Chlorite dismutase	NA|473aa|up_4|NZ_CP045480.1_6513819_6515238_-	PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed	NA|360aa|up_3|NZ_CP045480.1_6515240_6516320_-	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated	NA|185aa|up_2|NZ_CP045480.1_6516428_6516983_+	pfam11452, DUF3000, Protein of unknown function (DUF3000)	NA|525aa|up_1|NZ_CP045480.1_6516979_6518554_-	PRK03612, PRK03612, polyamine aminopropyltransferase	NA|141aa|up_0|NZ_CP045480.1_6518550_6518973_-	pfam03994, DUF350, Domain of Unknown Function (DUF350)	NA|144aa|down_0|NZ_CP045480.1_6520332_6520764_-	pfam14042, DUF4247, Domain of unknown function (DUF4247)	NA|204aa|down_1|NZ_CP045480.1_6520791_6521403_-	pfam13785, DUF4178, Domain of unknown function (DUF4178)	NA|239aa|down_2|NZ_CP045480.1_6522051_6522768_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|419aa|down_3|NZ_CP045480.1_6522830_6524087_+	COG0349, Rnd, Ribonuclease D [Translation, ribosomal structure and biogenesis]	NA|202aa|down_4|NZ_CP045480.1_6524136_6524742_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|751aa|down_5|NZ_CP045480.1_6524951_6527204_+	cd06548, GH18_chitinase, The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites	NA|302aa|down_6|NZ_CP045480.1_6527235_6528141_+	pfam03067, LPMO_10, Lytic polysaccharide mono-oxygenase, cellulose-degrading	NA|180aa|down_7|NZ_CP045480.1_6528140_6528680_+	pfam03713, DUF305, Domain of unknown function (DUF305)	NA|397aa|down_8|NZ_CP045480.1_6528808_6529999_+	TIGR01930, 3-ketoacyl-CoA_thiolase, acetyl-CoA acetyltransferases	NA|703aa|down_9|NZ_CP045480.1_6529995_6532104_+	PRK11154, fadJ, fatty acid oxidation complex subunit alpha FadJ
GCF_009429145.1_ASM942914v1	NZ_CP045480	Amycolatopsis sp. YIM 10 chromosome, complete genome	6	6519442-6519511	6	CRISPRCasFinder	no		WYL,cas3,csa3,casR,DEDDh,cas4,RT,DinG	Orphan	GCTGGCCCGGCTGCGATTGCCCCGG	25	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,casR,DEDDh,cas4,RT,DinG	NA|116aa|up_8|NZ_CP045480.1_6511097_6511445_+,NA|110aa|up_6|NZ_CP045480.1_6512759_6513089_-,NA	NA|267aa|up_9|NZ_CP045480.1_6510300_6511101_+	pfam05114, DUF692, Protein of unknown function (DUF692)	NA|116aa|up_8|NZ_CP045480.1_6511097_6511445_+	NA	NA|424aa|up_7|NZ_CP045480.1_6511415_6512687_-	pfam02515, CoA_transf_3, CoA-transferase family III	NA|110aa|up_6|NZ_CP045480.1_6512759_6513089_-	NA	NA|231aa|up_5|NZ_CP045480.1_6513139_6513832_-	pfam06778, Chlor_dismutase, Chlorite dismutase	NA|473aa|up_4|NZ_CP045480.1_6513819_6515238_-	PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed	NA|360aa|up_3|NZ_CP045480.1_6515240_6516320_-	PRK00115, hemE, uroporphyrinogen decarboxylase; Validated	NA|185aa|up_2|NZ_CP045480.1_6516428_6516983_+	pfam11452, DUF3000, Protein of unknown function (DUF3000)	NA|525aa|up_1|NZ_CP045480.1_6516979_6518554_-	PRK03612, PRK03612, polyamine aminopropyltransferase	NA|141aa|up_0|NZ_CP045480.1_6518550_6518973_-	pfam03994, DUF350, Domain of Unknown Function (DUF350)	NA|144aa|down_0|NZ_CP045480.1_6520332_6520764_-	pfam14042, DUF4247, Domain of unknown function (DUF4247)	NA|204aa|down_1|NZ_CP045480.1_6520791_6521403_-	pfam13785, DUF4178, Domain of unknown function (DUF4178)	NA|239aa|down_2|NZ_CP045480.1_6522051_6522768_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|419aa|down_3|NZ_CP045480.1_6522830_6524087_+	COG0349, Rnd, Ribonuclease D [Translation, ribosomal structure and biogenesis]	NA|202aa|down_4|NZ_CP045480.1_6524136_6524742_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|751aa|down_5|NZ_CP045480.1_6524951_6527204_+	cd06548, GH18_chitinase, The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites	NA|302aa|down_6|NZ_CP045480.1_6527235_6528141_+	pfam03067, LPMO_10, Lytic polysaccharide mono-oxygenase, cellulose-degrading	NA|180aa|down_7|NZ_CP045480.1_6528140_6528680_+	pfam03713, DUF305, Domain of unknown function (DUF305)	NA|397aa|down_8|NZ_CP045480.1_6528808_6529999_+	TIGR01930, 3-ketoacyl-CoA_thiolase, acetyl-CoA acetyltransferases	NA|703aa|down_9|NZ_CP045480.1_6529995_6532104_+	PRK11154, fadJ, fatty acid oxidation complex subunit alpha FadJ
GCF_009429145.1_ASM942914v1	NZ_CP045480	Amycolatopsis sp. YIM 10 chromosome, complete genome	7	7238820-7238922	7	CRISPRCasFinder	no	WYL	WYL,cas3,csa3,casR,DEDDh,cas4,RT,DinG	Unclear	CGCGCAGGCGAAACCGGCGCCACGTCAG	28	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,casR,DEDDh,cas4,RT,DinG	NA|161aa|up_7|NZ_CP045480.1_7231934_7232417_-,NA|201aa|down_8|NZ_CP045480.1_7245666_7246269_+	NA|326aa|up_9|NZ_CP045480.1_7229712_7230690_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|386aa|up_8|NZ_CP045480.1_7230780_7231938_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|161aa|up_7|NZ_CP045480.1_7231934_7232417_-	NA	NA|460aa|up_6|NZ_CP045480.1_7232413_7233793_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|229aa|up_5|NZ_CP045480.1_7233789_7234476_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|259aa|up_4|NZ_CP045480.1_7234500_7235277_-	cd00229, SGNH_hydrolase, SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases	NA|148aa|up_3|NZ_CP045480.1_7235310_7235754_-	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|291aa|up_2|NZ_CP045480.1_7235814_7236687_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|487aa|up_1|NZ_CP045480.1_7236759_7238220_+	PRK06184, PRK06184, hypothetical protein; Provisional	NA|197aa|up_0|NZ_CP045480.1_7238216_7238807_+	pfam16859, TetR_C_11, Bacterial transcriptional repressor C-terminal	NA|194aa|down_0|NZ_CP045480.1_7239324_7239906_+	TIGR03384, betaine_BetI, transcriptional repressor BetI	NA|118aa|down_1|NZ_CP045480.1_7239914_7240268_-	cd06587, VOC, vicinal oxygen chelate (VOC) family	NA|638aa|down_2|NZ_CP045480.1_7240322_7242236_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|275aa|down_3|NZ_CP045480.1_7242298_7243123_-	COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]	NA|90aa|down_4|NZ_CP045480.1_7243198_7243468_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|267aa|down_5|NZ_CP045480.1_7243602_7244403_+	COG2141, COG2141, Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases [Energy production and conversion]	NA|151aa|down_6|NZ_CP045480.1_7244408_7244861_-	pfam13669, Glyoxalase_4, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	NA|216aa|down_7|NZ_CP045480.1_7244866_7245514_-	COG0262, FolA, Dihydrofolate reductase [Coenzyme metabolism]	NA|201aa|down_8|NZ_CP045480.1_7245666_7246269_+	NA	WYL|301aa|down_9|NZ_CP045480.1_7246265_7247168_-	COG2378, COG2378, Predicted transcriptional regulator [Transcription]
GCF_009429145.1_ASM942914v1	NZ_CP045480	Amycolatopsis sp. YIM 10 chromosome, complete genome	8	9358034-9358117	8	CRISPRCasFinder	no	csa3	WYL,cas3,csa3,casR,DEDDh,cas4,RT,DinG	Type I-A	TGCGACTTCACCGAGGCCGACCTC	24	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,casR,DEDDh,cas4,RT,DinG	NA,NA	NA|408aa|up_9|NZ_CP045480.1_9349665_9350889_-	PRK08299, PRK08299, NADP-dependent isocitrate dehydrogenase	NA|122aa|up_8|NZ_CP045480.1_9351083_9351449_+	pfam09969, DUF2203, Uncharacterized conserved protein (DUF2203)	NA|195aa|up_7|NZ_CP045480.1_9351689_9352274_-	TIGR03252, TIGR03252, uncharacterized HhH-GPD family protein	NA|275aa|up_6|NZ_CP045480.1_9352299_9353124_-	cd07712, MBLAC2-like_MBL-fold, uncharacterized human metallo-beta-lactamase domain-containing protein 2 and related proteins; MBL-fold metallo hydrolase domain	NA|191aa|up_5|NZ_CP045480.1_9353120_9353693_-	TIGR03252, TIGR03252, uncharacterized HhH-GPD family protein	NA|215aa|up_4|NZ_CP045480.1_9353748_9354393_-	COG0421, SpeE, Spermidine synthase [Amino acid transport and metabolism]	NA|173aa|up_3|NZ_CP045480.1_9354410_9354929_-	cd18091, SpoU-like_TRM3-like, SAM-dependent tRNA methylase related to TRM3	NA|394aa|up_2|NZ_CP045480.1_9354978_9356160_-	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	csa3|106aa|up_1|NZ_CP045480.1_9356248_9356566_+	COG0640, ArsR, Predicted transcriptional regulators [Transcription]	NA|391aa|up_0|NZ_CP045480.1_9356754_9357927_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|794aa|down_0|NZ_CP045480.1_9358622_9361004_-	pfam14021, TNT, Tuberculosis necrotizing toxin	NA|337aa|down_1|NZ_CP045480.1_9361118_9362129_+	pfam04657, DMT_YdcZ, Putative inner membrane exporter, YdcZ	NA|284aa|down_2|NZ_CP045480.1_9362134_9362986_+	PRK14193, PRK14193, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	NA|78aa|down_3|NZ_CP045480.1_9363063_9363297_+	pfam11222, DUF3017, Protein of unknown function (DUF3017)	NA|495aa|down_4|NZ_CP045480.1_9363366_9364851_+	pfam08386, Abhydrolase_4, TAP-like protein	NA|199aa|down_5|NZ_CP045480.1_9366712_9367309_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|409aa|down_6|NZ_CP045480.1_9367357_9368584_+	cd01299, Met_dep_hydrolase_A, Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site	NA|285aa|down_7|NZ_CP045480.1_9368580_9369435_+	COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily [General function prediction only]	NA|151aa|down_8|NZ_CP045480.1_9369480_9369933_-	COG1403, McrA, Restriction endonuclease [Defense mechanisms]	NA|1108aa|down_9|NZ_CP045480.1_9369999_9373323_-	PRK05672, dnaE2, error-prone DNA polymerase; Validated
GCF_009429145.1_ASM942914v1	NZ_CP045480	Amycolatopsis sp. YIM 10 chromosome, complete genome	9	9943582-9943657	9	CRISPRCasFinder	no		WYL,cas3,csa3,casR,DEDDh,cas4,RT,DinG	Orphan	TACGGCCAGCAGCCCGGTTACGACC	25	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,casR,DEDDh,cas4,RT,DinG	NA|119aa|up_8|NZ_CP045480.1_9936871_9937228_-,NA|207aa|up_3|NZ_CP045480.1_9940072_9940693_+,NA|187aa|up_0|NZ_CP045480.1_9942772_9943333_+,NA	NA|513aa|up_9|NZ_CP045480.1_9935155_9936694_-	PRK07847, PRK07847, amidophosphoribosyltransferase; Provisional	NA|119aa|up_8|NZ_CP045480.1_9936871_9937228_-	NA	NA|72aa|up_7|NZ_CP045480.1_9937277_9937493_-	pfam04149, DUF397, Domain of unknown function (DUF397)	NA|274aa|up_6|NZ_CP045480.1_9937742_9938564_-	pfam13560, HTH_31, Helix-turn-helix domain	NA|279aa|up_5|NZ_CP045480.1_9938776_9939613_+	pfam04672, Methyltransf_19, S-adenosyl methyltransferase	NA|127aa|up_4|NZ_CP045480.1_9939628_9940009_-	pfam17844, SCP_3, Bacterial SCP ortholog	NA|207aa|up_3|NZ_CP045480.1_9940072_9940693_+	NA	NA|269aa|up_2|NZ_CP045480.1_9940788_9941595_+	cd06412, GH25_CH-type, CH-type (Chalaropsis-type) lysozymes represent one of four functionally-defined classes of peptidoglycan hydrolases (also referred to as endo-N-acetylmuramidases) that cleave bacterial cell wall peptidoglycans	NA|306aa|up_1|NZ_CP045480.1_9941731_9942649_+	cd06412, GH25_CH-type, CH-type (Chalaropsis-type) lysozymes represent one of four functionally-defined classes of peptidoglycan hydrolases (also referred to as endo-N-acetylmuramidases) that cleave bacterial cell wall peptidoglycans	NA|187aa|up_0|NZ_CP045480.1_9942772_9943333_+	NA	NA|349aa|down_0|NZ_CP045480.1_9945482_9946529_+	pfam13576, Pentapeptide_3, Pentapeptide repeats (9 copies)	NA|757aa|down_1|NZ_CP045480.1_9946533_9948804_-	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|532aa|down_2|NZ_CP045480.1_9949009_9950605_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|556aa|down_3|NZ_CP045480.1_9950655_9952323_+	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|229aa|down_4|NZ_CP045480.1_9952521_9953208_-	PRK03619, PRK03619, phosphoribosylformylglycinamidine synthase subunit PurQ	NA|80aa|down_5|NZ_CP045480.1_9953204_9953444_-	PRK05974, PRK05974, phosphoribosylformylglycinamidine synthase subunit PurS; Reviewed	NA|146aa|down_6|NZ_CP045480.1_9953583_9954021_-	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD	NA|529aa|down_7|NZ_CP045480.1_9954259_9955846_+	PRK02106, PRK02106, choline dehydrogenase; Validated	NA|498aa|down_8|NZ_CP045480.1_9955826_9957320_-	cd07099, ALDH_DDALDH, Methylomonas sp	NA|361aa|down_9|NZ_CP045480.1_9957356_9958439_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters
GCF_009429145.1_ASM942914v1	NZ_CP045480	Amycolatopsis sp. YIM 10 chromosome, complete genome	10	10239441-10239586	10	CRISPRCasFinder	no		WYL,cas3,csa3,casR,DEDDh,cas4,RT,DinG	Orphan	GGCAGGCCGCCACCCAGGATCGCGTC	26	0	0	NA	NA	NA	2	2	Orphan	WYL,cas3,csa3,casR,DEDDh,cas4,RT,DinG	NA|228aa|up_2|NZ_CP045480.1_10237018_10237702_-,NA|319aa|down_0|NZ_CP045480.1_10242778_10243735_-	NA|369aa|up_9|NZ_CP045480.1_10229679_10230786_-	COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]	NA|227aa|up_8|NZ_CP045480.1_10230852_10231533_+	pfam02909, TetR_C, Tetracyclin repressor, C-terminal all-alpha domain	NA|276aa|up_7|NZ_CP045480.1_10231536_10232364_-	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase	NA|198aa|up_6|NZ_CP045480.1_10232360_10232954_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|496aa|up_5|NZ_CP045480.1_10234275_10235763_+	pfam08386, Abhydrolase_4, TAP-like protein	NA|134aa|up_4|NZ_CP045480.1_10235805_10236207_+	cd08355, TioX_like, Micromonospora sp	NA|255aa|up_3|NZ_CP045480.1_10236194_10236959_-	cd05362, THN_reductase-like_SDR_c, tetrahydroxynaphthalene/trihydroxynaphthalene reductase-like, classical (c) SDRs	NA|228aa|up_2|NZ_CP045480.1_10237018_10237702_-	NA	NA|196aa|up_1|NZ_CP045480.1_10237752_10238340_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]	NA|260aa|up_0|NZ_CP045480.1_10238452_10239232_+	cd07363, 45_DOPA_Dioxygenase, The Class III extradiol dioxygenase, 4,5-DOPA Dioxygenase, catalyzes the incorporation of both atoms of molecular oxygen into 4,5-dihydroxy-phenylalanine	NA|319aa|down_0|NZ_CP045480.1_10242778_10243735_-	NA	NA|384aa|down_1|NZ_CP045480.1_10244060_10245212_+	pfam01594, AI-2E_transport, AI-2E family transporter	NA|381aa|down_2|NZ_CP045480.1_10245208_10246351_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|217aa|down_3|NZ_CP045480.1_10246347_10246998_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|235aa|down_4|NZ_CP045480.1_10247146_10247851_+	pfam08044, DUF1707, Domain of unknown function (DUF1707)	NA|206aa|down_5|NZ_CP045480.1_10247844_10248462_+	pfam08044, DUF1707, Domain of unknown function (DUF1707)	NA|549aa|down_6|NZ_CP045480.1_10248445_10250092_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|292aa|down_7|NZ_CP045480.1_10250956_10251832_-	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP	NA|52aa|down_8|NZ_CP045480.1_10252005_10252161_-	pfam02956, TT_ORF1, TT viral orf 1	NA|555aa|down_9|NZ_CP045480.1_10252200_10253865_+	pfam10101, DUF2339, Predicted membrane protein (DUF2339)
