assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009431955.1_ASM943195v1	NZ_CP040305	Escherichia coli strain HB6 chromosome, complete genome	1	592860-593009	1	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,cas3,DinG,PrimPol,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,cas3,DinG,PrimPol,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|579aa|up_6|NZ_CP040305.1_584025_585762_+,NA|245aa|down_7|NZ_CP040305.1_602086_602821_+	NA|238aa|up_9|NZ_CP040305.1_581928_582642_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_8|NZ_CP040305.1_582712_583306_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|151aa|up_7|NZ_CP040305.1_583450_583903_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|579aa|up_6|NZ_CP040305.1_584025_585762_+	NA	NA|335aa|up_5|NZ_CP040305.1_585818_586823_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_CP040305.1_586984_587401_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_CP040305.1_587446_587950_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|NZ_CP040305.1_588142_589339_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP040305.1_589393_592249_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP040305.1_592248_592692_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP040305.1_593045_594557_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP040305.1_594823_595924_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP040305.1_595923_597006_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP040305.1_597166_598669_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|340aa|down_4|NZ_CP040305.1_598798_599818_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|425aa|down_5|NZ_CP040305.1_600262_601537_+	PRK09692, PRK09692, integrase; Provisional	NA|102aa|down_6|NZ_CP040305.1_601704_602010_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|245aa|down_7|NZ_CP040305.1_602086_602821_+	NA	NA|415aa|down_8|NZ_CP040305.1_602858_604103_-	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|191aa|down_9|NZ_CP040305.1_604428_605001_-	pfam07455, Psu, Phage polarity suppression protein (Psu)
GCF_009431955.1_ASM943195v1	NZ_CP040305	Escherichia coli strain HB6 chromosome, complete genome	2	824454-824588	2	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,cas3,DinG,PrimPol,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	TGCCGGATGCGCGTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCC	50	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,cas3,DinG,PrimPol,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|251aa|up_4|NZ_CP040305.1_816407_817160_+,NA|190aa|down_7|NZ_CP040305.1_833629_834199_+	NA|274aa|up_9|NZ_CP040305.1_809542_810364_-	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|330aa|up_8|NZ_CP040305.1_810360_811350_-	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|429aa|up_7|NZ_CP040305.1_811349_812636_-	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|785aa|up_6|NZ_CP040305.1_812688_815043_-	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|272aa|up_5|NZ_CP040305.1_815297_816113_+	PRK09430, djlA, co-chaperone DjlA	NA|251aa|up_4|NZ_CP040305.1_816407_817160_+	NA	NA|220aa|up_3|NZ_CP040305.1_817577_818237_-	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|969aa|up_2|NZ_CP040305.1_818248_821155_-	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|784aa|up_1|NZ_CP040305.1_821318_823670_-	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|232aa|up_0|NZ_CP040305.1_823744_824440_-	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|501aa|down_0|NZ_CP040305.1_824639_826142_-	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|567aa|down_1|NZ_CP040305.1_826152_827853_-	PRK04123, PRK04123, ribulokinase; Provisional	NA|293aa|down_2|NZ_CP040305.1_828191_829070_+	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|255aa|down_3|NZ_CP040305.1_829155_829920_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|233aa|down_4|NZ_CP040305.1_830006_830705_-	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|537aa|down_5|NZ_CP040305.1_830688_832299_-	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|328aa|down_6|NZ_CP040305.1_832274_833258_-	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|190aa|down_7|NZ_CP040305.1_833629_834199_+	NA	NA|553aa|down_8|NZ_CP040305.1_834427_836086_-	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|44aa|down_9|NZ_CP040305.1_836174_836306_+	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT
GCF_009431955.1_ASM943195v1	NZ_CP040305	Escherichia coli strain HB6 chromosome, complete genome	3	2140250-2140399	3	CRISPRCasFinder	no	DEDDh	DEDDh,c2c9_V-U4,cas3,DinG,PrimPol,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Unclear	TACCAGAGATAGCGAACCGTAGGTCGGAAAAGGCGCTCGCGCCGCATCCGACA	53	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,cas3,DinG,PrimPol,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|22aa|up_2|NZ_CP040305.1_2138337_2138403_+,NA	NA|273aa|up_9|NZ_CP040305.1_2132304_2133123_-	PRK10302, PRK10302, hypothetical protein; Provisional	NA|189aa|up_8|NZ_CP040305.1_2133119_2133686_-	PRK11440, PRK11440, putative hydrolase; Provisional	NA|591aa|up_7|NZ_CP040305.1_2133995_2135768_+	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|151aa|up_6|NZ_CP040305.1_2135885_2136338_+	PRK09438, nudB, dihydroneopterin triphosphate pyrophosphatase; Provisional	NA|247aa|up_5|NZ_CP040305.1_2136366_2137107_+	PRK00110, PRK00110, YebC/PmpR family DNA-binding transcriptional regulator	NA|174aa|up_4|NZ_CP040305.1_2137141_2137663_+	TIGR00228, Crossover_junction_endodeoxyribonuclease_RuvC, crossover junction endodeoxyribonuclease RuvC	NA|201aa|up_3|NZ_CP040305.1_2137664_2138267_-	PRK11470, PRK11470, YebB family permuted papain-like enzyme	NA|22aa|up_2|NZ_CP040305.1_2138337_2138403_+	NA	NA|204aa|up_1|NZ_CP040305.1_2138541_2139153_+	PRK00116, ruvA, Holliday junction branch migration protein RuvA	NA|337aa|up_0|NZ_CP040305.1_2139161_2140172_+	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB	NA|262aa|down_0|NZ_CP040305.1_2140417_2141203_-	PRK09543, znuB, zinc ABC transporter permease subunit ZnuB	NA|252aa|down_1|NZ_CP040305.1_2141199_2141955_-	PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed	NA|311aa|down_2|NZ_CP040305.1_2142033_2142966_+	PRK09545, znuA, zinc ABC transporter substrate-binding protein ZnuA	NA|441aa|down_3|NZ_CP040305.1_2142981_2144304_+	PRK11649, PRK11649, putative peptidase; Provisional	NA|324aa|down_4|NZ_CP040305.1_2144423_2145395_+	PRK08943, PRK08943, lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated	NA|481aa|down_5|NZ_CP040305.1_2145525_2146968_-	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|290aa|down_6|NZ_CP040305.1_2147095_2147965_-	PRK11302, PRK11302, DNA-binding transcriptional regulator HexR; Provisional	NA|492aa|down_7|NZ_CP040305.1_2148302_2149778_+	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|604aa|down_8|NZ_CP040305.1_2150012_2151824_+	PRK09054, PRK09054, phosphogluconate dehydratase; Validated	NA|214aa|down_9|NZ_CP040305.1_2151860_2152502_+	PRK05718, PRK05718, keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
GCF_009431955.1_ASM943195v1	NZ_CP040305	Escherichia coli strain HB6 chromosome, complete genome	4	2340173-2340296	4	CRISPRCasFinder	no	DEDDh	DEDDh,c2c9_V-U4,cas3,DinG,PrimPol,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,cas3,DinG,PrimPol,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA|30aa|down_7|NZ_CP040305.1_2349192_2349282_+	NA|471aa|up_9|NZ_CP040305.1_2329626_2331039_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP040305.1_2331595_2331805_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP040305.1_2332260_2332887_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP040305.1_2332907_2335010_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP040305.1_2335013_2335661_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP040305.1_2335724_2336393_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP040305.1_2336389_2337175_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP040305.1_2337178_2337991_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP040305.1_2338002_2339607_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP040305.1_2339732_2340038_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP040305.1_2340610_2341867_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP040305.1_2341907_2343281_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP040305.1_2343495_2344137_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP040305.1_2344176_2345325_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP040305.1_2345615_2346827_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP040305.1_2346939_2347872_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP040305.1_2347868_2348894_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP040305.1_2349192_2349282_+	NA	NA|390aa|down_8|NZ_CP040305.1_2349447_2350617_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP040305.1_2350762_2351344_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_009431955.1_ASM943195v1	NZ_CP040305	Escherichia coli strain HB6 chromosome, complete genome	5	4420380-4420592	5,1,1	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,c2c9_V-U4,cas3,DinG,PrimPol,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACACA,CGGTTTATCCCCGCTGGCGCGGGGAACACA	29,30,30	0	0	NA	NA	I-E:I-E:I-E	3,3,2	3	TypeI-E	DEDDh,c2c9_V-U4,cas3,DinG,PrimPol,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|254aa|up_9|NZ_CP040305.1_4412192_4412954_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP040305.1_4412934_4413984_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP040305.1_4413980_4414460_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP040305.1_4414459_4415170_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP040305.1_4415188_4415500_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP040305.1_4415693_4416017_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP040305.1_4416066_4416672_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP040305.1_4416671_4418099_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP040305.1_4418100_4419009_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP040305.1_4419260_4420298_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP040305.1_4420687_4420981_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NZ_CP040305.1_4420977_4421901_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP040305.1_4421897_4422548_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP040305.1_4422529_4423276_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP040305.1_4423286_4424342_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP040305.1_4424353_4424890_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_6|NZ_CP040305.1_4424886_4426449_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP040305.1_4426546_4429246_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP040305.1_4429437_4429590_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP040305.1_4429853_4430588_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_009431955.1_ASM943195v1	NZ_CP040305	Escherichia coli strain HB6 chromosome, complete genome	6	4446283-4446371	6	CRISPRCasFinder	no	cas3	DEDDh,c2c9_V-U4,cas3,DinG,PrimPol,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Unclear	GGTTTATCCCCACTGGCGCGGGGAACTC	28	0	0	NA	NA	I-E	1	1	Unclear	DEDDh,c2c9_V-U4,cas3,DinG,PrimPol,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|600aa|up_9|NZ_CP040305.1_4432373_4434173_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|122aa|up_8|NZ_CP040305.1_4434488_4434854_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|424aa|up_7|NZ_CP040305.1_4434931_4436203_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_6|NZ_CP040305.1_4436193_4436454_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_5|NZ_CP040305.1_4436470_4437046_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|260aa|up_4|NZ_CP040305.1_4438050_4438830_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|485aa|up_3|NZ_CP040305.1_4440237_4441692_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP040305.1_4441761_4442547_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP040305.1_4442865_4444143_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP040305.1_4444169_4445648_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP040305.1_4446710_4447382_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|207aa|down_1|NZ_CP040305.1_4447536_4448157_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|225aa|down_2|NZ_CP040305.1_4448170_4448845_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|383aa|down_3|NZ_CP040305.1_4449078_4450227_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|305aa|down_4|NZ_CP040305.1_4450223_4451138_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_5|NZ_CP040305.1_4451197_4452496_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_6|NZ_CP040305.1_4452583_4454221_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_7|NZ_CP040305.1_4454448_4455240_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_8|NZ_CP040305.1_4455310_4455646_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_9|NZ_CP040305.1_4455645_4455894_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE
