assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009433135.1_ASM943313v1	NZ_CP040316	Escherichia coli strain CV261 chromosome, complete genome	1	621626-621775	1	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,cas3,DinG,PrimPol,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	54	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,cas3,DinG,PrimPol,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|573aa|up_6|NZ_CP040316.1_612809_614528_+,NA|245aa|down_7|NZ_CP040316.1_630852_631587_+	NA|238aa|up_9|NZ_CP040316.1_610712_611426_-	PRK12742, PRK12742, SDR family oxidoreductase	NA|198aa|up_8|NZ_CP040316.1_611496_612090_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|151aa|up_7|NZ_CP040316.1_612234_612687_+	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|573aa|up_6|NZ_CP040316.1_612809_614528_+	NA	NA|335aa|up_5|NZ_CP040316.1_614584_615589_-	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|139aa|up_4|NZ_CP040316.1_615750_616167_+	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|168aa|up_3|NZ_CP040316.1_616212_616716_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|399aa|up_2|NZ_CP040316.1_616908_618105_+	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|952aa|up_1|NZ_CP040316.1_618159_621015_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|148aa|up_0|NZ_CP040316.1_621014_621458_-	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|504aa|down_0|NZ_CP040316.1_621811_623323_-	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|367aa|down_1|NZ_CP040316.1_623589_624690_+	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|361aa|down_2|NZ_CP040316.1_624689_625772_+	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|501aa|down_3|NZ_CP040316.1_625932_627435_-	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|340aa|down_4|NZ_CP040316.1_627564_628584_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|425aa|down_5|NZ_CP040316.1_629028_630303_+	PRK09692, PRK09692, integrase; Provisional	NA|102aa|down_6|NZ_CP040316.1_630470_630776_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|245aa|down_7|NZ_CP040316.1_630852_631587_+	NA	NA|415aa|down_8|NZ_CP040316.1_631624_632869_-	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|191aa|down_9|NZ_CP040316.1_633194_633767_-	pfam07455, Psu, Phage polarity suppression protein (Psu)
GCF_009433135.1_ASM943313v1	NZ_CP040316	Escherichia coli strain CV261 chromosome, complete genome	2	853201-853335	2	CRISPRCasFinder	no		DEDDh,c2c9_V-U4,cas3,DinG,PrimPol,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	TGCCGGATGCGCGTTGCTTATCCGGCCTACAAAATCGCAGCGTGTAGGCC	50	0	0	NA	NA	NA	1	1	Orphan	DEDDh,c2c9_V-U4,cas3,DinG,PrimPol,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|251aa|up_4|NZ_CP040316.1_845154_845907_+,NA|190aa|down_7|NZ_CP040316.1_862376_862946_+	NA|274aa|up_9|NZ_CP040316.1_838289_839111_-	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|330aa|up_8|NZ_CP040316.1_839107_840097_-	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|429aa|up_7|NZ_CP040316.1_840096_841383_-	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|785aa|up_6|NZ_CP040316.1_841435_843790_-	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|272aa|up_5|NZ_CP040316.1_844044_844860_+	PRK09430, djlA, co-chaperone DjlA	NA|251aa|up_4|NZ_CP040316.1_845154_845907_+	NA	NA|220aa|up_3|NZ_CP040316.1_846324_846984_-	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|969aa|up_2|NZ_CP040316.1_846995_849902_-	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|784aa|up_1|NZ_CP040316.1_850065_852417_-	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|232aa|up_0|NZ_CP040316.1_852491_853187_-	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|501aa|down_0|NZ_CP040316.1_853386_854889_-	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|567aa|down_1|NZ_CP040316.1_854899_856600_-	PRK04123, PRK04123, ribulokinase; Provisional	NA|293aa|down_2|NZ_CP040316.1_856938_857817_+	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|255aa|down_3|NZ_CP040316.1_857902_858667_+	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|233aa|down_4|NZ_CP040316.1_858753_859452_-	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|537aa|down_5|NZ_CP040316.1_859435_861046_-	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|328aa|down_6|NZ_CP040316.1_861021_862005_-	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|190aa|down_7|NZ_CP040316.1_862376_862946_+	NA	NA|553aa|down_8|NZ_CP040316.1_863174_864833_-	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|44aa|down_9|NZ_CP040316.1_864921_865053_+	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT
GCF_009433135.1_ASM943313v1	NZ_CP040316	Escherichia coli strain CV261 chromosome, complete genome	3	3656597-3656708	1	PILER-CR	no		DEDDh,c2c9_V-U4,cas3,DinG,PrimPol,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Orphan	TTTTCTTACCTGATTCGGGTAA	22	1	1	3656666-3656691	NZ_CP040316.1_2360469-2360444	NA	2	2	Orphan	DEDDh,c2c9_V-U4,cas3,DinG,PrimPol,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA|47aa|up_9|NZ_CP040316.1_3652807_3652948_-,NA|34aa|up_4|NZ_CP040316.1_3654208_3654310_-,NA|94aa|up_3|NZ_CP040316.1_3654400_3654682_-,NA|66aa|up_2|NZ_CP040316.1_3654725_3654923_-,NA|95aa|up_1|NZ_CP040316.1_3655150_3655435_-,NA|94aa|down_9|NZ_CP040316.1_3663442_3663724_+	NA|47aa|up_9|NZ_CP040316.1_3652807_3652948_-	NA	NA|121aa|up_8|NZ_CP040316.1_3652944_3653307_-	PRK09786, PRK09786, endodeoxyribonuclease RUS; Reviewed	NA|97aa|up_7|NZ_CP040316.1_3653303_3653594_-	pfam07102, DUF1364, Protein of unknown function (DUF1364)	NA|57aa|up_6|NZ_CP040316.1_3653586_3653757_-	PRK09689, PRK09689, prophage protein NinE; Provisional	NA|152aa|up_5|NZ_CP040316.1_3653756_3654212_-	PRK09741, PRK09741, hypothetical protein; Provisional	NA|34aa|up_4|NZ_CP040316.1_3654208_3654310_-	NA	NA|94aa|up_3|NZ_CP040316.1_3654400_3654682_-	NA	NA|66aa|up_2|NZ_CP040316.1_3654725_3654923_-	NA	NA|95aa|up_1|NZ_CP040316.1_3655150_3655435_-	NA	NA|234aa|up_0|NZ_CP040316.1_3655431_3656133_-	pfam06992, Phage_lambda_P, Replication protein P	NA|180aa|down_0|NZ_CP040316.1_3657145_3657685_-	pfam06254, YdaT_toxin, Putative bacterial toxin ydaT	NA|231aa|down_1|NZ_CP040316.1_3658048_3658741_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|536aa|down_2|NZ_CP040316.1_3658847_3660455_+	cd01406, SIR2-like, Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation	NA|97aa|down_3|NZ_CP040316.1_3660958_3661249_+	PRK11354, kil, FtsZ inhibitor protein; Reviewed	NA|99aa|down_4|NZ_CP040316.1_3661324_3661621_+	pfam06064, Gam, Host-nuclease inhibitor protein Gam	NA|262aa|down_5|NZ_CP040316.1_3661626_3662412_+	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet	NA|226aa|down_6|NZ_CP040316.1_3662408_3663086_+	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|61aa|down_7|NZ_CP040316.1_3663085_3663268_+	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|64aa|down_8|NZ_CP040316.1_3663240_3663432_+	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|94aa|down_9|NZ_CP040316.1_3663442_3663724_+	NA
GCF_009433135.1_ASM943313v1	NZ_CP040316	Escherichia coli strain CV261 chromosome, complete genome	4	4320455-4320667	3,1,2	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,c2c9_V-U4,cas3,DinG,PrimPol,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Type I-E	CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACACA,CGGTTTATCCCCGCTGGCGCGGGGAACACA	29,30,30	0	0	NA	NA	I-E:I-E:I-E	3,3,2	3	TypeI-E	DEDDh,c2c9_V-U4,cas3,DinG,PrimPol,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|254aa|up_9|NZ_CP040316.1_4312267_4313029_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP040316.1_4313009_4314059_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP040316.1_4314055_4314535_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP040316.1_4314534_4315245_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP040316.1_4315263_4315575_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP040316.1_4315768_4316092_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP040316.1_4316141_4316747_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP040316.1_4316746_4318174_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP040316.1_4318175_4319084_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP040316.1_4319335_4320373_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP040316.1_4320762_4321056_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NZ_CP040316.1_4321052_4321976_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP040316.1_4321972_4322623_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP040316.1_4322604_4323351_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_4|NZ_CP040316.1_4323361_4324417_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|179aa|down_5|NZ_CP040316.1_4324428_4324965_-	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas8e|521aa|down_6|NZ_CP040316.1_4324961_4326524_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|900aa|down_7|NZ_CP040316.1_4326621_4329321_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|51aa|down_8|NZ_CP040316.1_4329512_4329665_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_9|NZ_CP040316.1_4329928_4330663_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase
GCF_009433135.1_ASM943313v1	NZ_CP040316	Escherichia coli strain CV261 chromosome, complete genome	5	4346358-4346446	4	CRISPRCasFinder	no	cas3	DEDDh,c2c9_V-U4,cas3,DinG,PrimPol,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	Unclear	GGTTTATCCCCACTGGCGCGGGGAACTC	28	0	0	NA	NA	I-E	1	1	Unclear	DEDDh,c2c9_V-U4,cas3,DinG,PrimPol,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK	NA,NA	NA|600aa|up_9|NZ_CP040316.1_4332448_4334248_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|122aa|up_8|NZ_CP040316.1_4334563_4334929_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|424aa|up_7|NZ_CP040316.1_4335006_4336278_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_6|NZ_CP040316.1_4336268_4336529_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_5|NZ_CP040316.1_4336545_4337121_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|260aa|up_4|NZ_CP040316.1_4338125_4338905_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|485aa|up_3|NZ_CP040316.1_4340312_4341767_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP040316.1_4341836_4342622_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP040316.1_4342940_4344218_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP040316.1_4344244_4345723_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP040316.1_4346785_4347457_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|207aa|down_1|NZ_CP040316.1_4347611_4348232_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|225aa|down_2|NZ_CP040316.1_4348245_4348920_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|383aa|down_3|NZ_CP040316.1_4349153_4350302_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|305aa|down_4|NZ_CP040316.1_4350298_4351213_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_5|NZ_CP040316.1_4351272_4352571_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_6|NZ_CP040316.1_4352658_4354296_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_7|NZ_CP040316.1_4354523_4355315_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_8|NZ_CP040316.1_4355385_4355721_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_9|NZ_CP040316.1_4355720_4355969_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE
