assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009496935.1_ASM949693v1	NZ_CP045564	Riemerella anatipestifer strain RA-LZ01 chromosome, complete genome	1	412046-412214	1	CRISPRCasFinder	no	cas3	csa3,cas3,WYL,DEDDh,cas2,cas1,cas9,Csx28,cas13b	Unclear	AGCCTTTATTGTATTCCTCACGG	23	0	0	NA	NA	NA	3	3	Unclear	csa3,cas3,WYL,DEDDh,cas2,cas1,cas9,Csx28,cas13b	NA|282aa|up_7|NZ_CP045564.1_402089_402935_-,NA|135aa|up_6|NZ_CP045564.1_403031_403436_-,NA	NA|801aa|up_9|NZ_CP045564.1_398305_400708_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|377aa|up_8|NZ_CP045564.1_400846_401977_-	cd00140, beta_clamp, Beta clamp domain	NA|282aa|up_7|NZ_CP045564.1_402089_402935_-	NA	NA|135aa|up_6|NZ_CP045564.1_403031_403436_-	NA	NA|889aa|up_5|NZ_CP045564.1_403447_406114_-	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily	NA|212aa|up_4|NZ_CP045564.1_406146_406782_-	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|117aa|up_3|NZ_CP045564.1_406781_407132_-	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|340aa|up_2|NZ_CP045564.1_407136_408156_-	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs	NA|376aa|up_1|NZ_CP045564.1_408165_409293_-	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)	NA|810aa|up_0|NZ_CP045564.1_409368_411798_-	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion]	NA|955aa|down_0|NZ_CP045564.1_412333_415198_+	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|710aa|down_1|NZ_CP045564.1_415257_417387_-	pfam10459, Peptidase_S46, Peptidase S46	NA|144aa|down_2|NZ_CP045564.1_417460_417892_-	pfam14088, DUF4268, Domain of unknown function (DUF4268)	NA|373aa|down_3|NZ_CP045564.1_418020_419139_+	COG0614, FepB, ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|476aa|down_4|NZ_CP045564.1_419222_420650_+	cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate lyase (ASL)_subgroup 2	NA|106aa|down_5|NZ_CP045564.1_420755_421073_-	cd16322, TTHA1623-like_MBL-fold, uncharacterized Thermus thermophilus TTHA1623 and related proteins; MBL-fold metallo hydrolase domain	NA|678aa|down_6|NZ_CP045564.1_421209_423243_+	PRK00133, metG, methionyl-tRNA synthetase; Reviewed	NA|377aa|down_7|NZ_CP045564.1_423403_424534_+	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases	cas3|450aa|down_8|NZ_CP045564.1_424683_426033_+	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|389aa|down_9|NZ_CP045564.1_426093_427260_-	COG1979, COG1979, Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
GCF_009496935.1_ASM949693v1	NZ_CP045564	Riemerella anatipestifer strain RA-LZ01 chromosome, complete genome	2	857414-858384	2,1	CRISPRCasFinder,PILER-CR	no	cas2,cas1,cas9	csa3,cas3,WYL,DEDDh,cas2,cas1,cas9,Csx28,cas13b	 or Type II-C?, Type II-B,Type II-C,Type II-A,Type II-B	GTTGTGAATTGCTTTCAATTTTCACTATCTTTGTGATAATTCGCAAC,GTTGTGAATTGCTTTCAATTTTCACTATCTTTGTGATAGTTCGCAAC	47,47	2	2	858308-858337|858309-858338	NZ_CP045564.1_1472820-1472849|NZ_CP045564.1_1472820-1472849	NA:NA	12,12	12	orTypeII-C?,TypeII-B,TypeII-C,TypeII-A,TypeII-B	csa3,cas3,WYL,DEDDh,cas2,cas1,cas9,Csx28,cas13b	NA|146aa|up_5|NZ_CP045564.1_849263_849701_-,NA|468aa|up_1|NZ_CP045564.1_855731_857135_+,NA|60aa|up_0|NZ_CP045564.1_857232_857412_+,NA	NA|257aa|up_9|NZ_CP045564.1_843741_844512_-	PRK07570, PRK07570, succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated	NA|671aa|up_8|NZ_CP045564.1_844535_846548_-	PRK07573, sdhA, fumarate reductase/succinate dehydrogenase flavoprotein subunit	NA|223aa|up_7|NZ_CP045564.1_846612_847281_-	cd03498, SQR_TypeB_2_TM, Succinate:quinone oxidoreductase (SQR)-like Type B subfamily 2, transmembrane subunit; composed of proteins with similarity to the SQRs of Geobacter metallireducens and Corynebacterium glutamicum	NA|603aa|up_6|NZ_CP045564.1_847405_849214_-	pfam03772, Competence, Competence protein	NA|146aa|up_5|NZ_CP045564.1_849263_849701_-	NA	NA|543aa|up_4|NZ_CP045564.1_849700_851329_-	PLN02820, PLN02820, 3-methylcrotonyl-CoA carboxylase, beta chain	NA|398aa|up_3|NZ_CP045564.1_851433_852627_-	cd10283, MnuA_DNase1-like, Mycoplasma pulmonis MnuA nuclease-like	NA|936aa|up_2|NZ_CP045564.1_852898_855706_+	cd11308, Peptidase_M14NE-CP-C_like, Peptidase associated domain: C-terminal domain of M14 N/E carboxypeptidase; putative folding, regulation, or interaction domain	NA|468aa|up_1|NZ_CP045564.1_855731_857135_+	NA	NA|60aa|up_0|NZ_CP045564.1_857232_857412_+	NA	cas2|113aa|down_0|NZ_CP045564.1_858491_858830_-	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	cas1|300aa|down_1|NZ_CP045564.1_858819_859719_-	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI	cas9|1401aa|down_2|NZ_CP045564.1_859731_863934_-	pfam18541, RuvC_III, RuvC endonuclease subdomain 3	NA|312aa|down_3|NZ_CP045564.1_864186_865122_+	cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites	NA|110aa|down_4|NZ_CP045564.1_865167_865497_-	PTZ00490, PTZ00490, Ferredoxin superfamily; Provisional	NA|351aa|down_5|NZ_CP045564.1_865502_866555_-	COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]	NA|249aa|down_6|NZ_CP045564.1_866713_867460_+	pfam11306, DUF3108, Protein of unknown function (DUF3108)	NA|167aa|down_7|NZ_CP045564.1_867489_867990_+	pfam10652, DUF2480, Protein of unknown function (DUF2480)	NA|222aa|down_8|NZ_CP045564.1_868037_868703_+	pfam06078, DUF937, Bacterial protein of unknown function (DUF937)	NA|325aa|down_9|NZ_CP045564.1_868854_869829_+	pfam01916, DS, Deoxyhypusine synthase
GCF_009496935.1_ASM949693v1	NZ_CP045564	Riemerella anatipestifer strain RA-LZ01 chromosome, complete genome	3	1694207-1695571	3,2,1	CRISPRCasFinder,PILER-CR,CRT	no	WYL,Csx28,cas13b	csa3,cas3,WYL,DEDDh,cas2,cas1,cas9,Csx28,cas13b	Type VI-B1,,Type VI-B2	GTTGTGAATACCCTTCAAAATGAGAGCAGTCCCAAC,GTTGTGAATACCCTTCAAAGTGAGAGCAGTCCCAAC,GTTGTGAATACCCTTCAAANTGAGAGCAGTCCCAAC	36,36,36	0	0	NA	NA	VI-B2:VI-B2:VI-B2	17,9,13	17	,TypeVI-B1,TypeVI-B2	csa3,cas3,WYL,DEDDh,cas2,cas1,cas9,Csx28,cas13b	NA|71aa|up_8|NZ_CP045564.1_1681373_1681586_+,NA|229aa|up_2|NZ_CP045564.1_1690169_1690856_+,Csx28|179aa|down_0|NZ_CP045564.1_1695699_1696236_-	WYL|304aa|up_9|NZ_CP045564.1_1674726_1675638_+	pfam13280, WYL, WYL domain	NA|71aa|up_8|NZ_CP045564.1_1681373_1681586_+	NA	NA|706aa|up_7|NZ_CP045564.1_1681572_1683690_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|490aa|up_6|NZ_CP045564.1_1683937_1685407_-	PRK05932, PRK05932, RNA polymerase factor sigma-54; Reviewed	NA|483aa|up_5|NZ_CP045564.1_1685409_1686858_-	PRK03932, asnC, asparaginyl-tRNA synthetase; Validated	NA|427aa|up_4|NZ_CP045564.1_1687022_1688303_-	COG0427, ACH1, Acetyl-CoA hydrolase [Energy production and conversion]	NA|388aa|up_3|NZ_CP045564.1_1688329_1689493_-	COG3508, HmgA, Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|229aa|up_2|NZ_CP045564.1_1690169_1690856_+	NA	NA|443aa|up_1|NZ_CP045564.1_1690883_1692212_+	cd00037, CLECT, C-type lectin (CTL)/C-type lectin-like (CTLD) domain	NA|240aa|up_0|NZ_CP045564.1_1692233_1692953_+	pfam14848, HU-DNA_bdg, DNA-binding domain	Csx28|179aa|down_0|NZ_CP045564.1_1695699_1696236_-	NA	cas13b|1096aa|down_1|NZ_CP045564.1_1696242_1699530_-	cd20477, Cas13b_Pb-like, Class 2 type VI-B CRISPR-associated RNA-guided ribonuclease Cas13b from Prevotella buccae and similar Cas13b proteins	NA|350aa|down_2|NZ_CP045564.1_1699661_1700711_-	pfam02685, Glucokinase, Glucokinase	NA|868aa|down_3|NZ_CP045564.1_1700876_1703480_+	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|456aa|down_4|NZ_CP045564.1_1703575_1704943_-	pfam00639, Rotamase, PPIC-type PPIASE domain	NA|307aa|down_5|NZ_CP045564.1_1705039_1705960_-	cd01946, ribokinase_group_C, Ribokinase-like subgroup C	NA|188aa|down_6|NZ_CP045564.1_1705985_1706549_-	TIGR03512, GldD_lipo, gliding motility-associated lipoprotein GldD	NA|347aa|down_7|NZ_CP045564.1_1706593_1707634_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|98aa|down_8|NZ_CP045564.1_1707680_1707974_+	cd13836, IHF_B, Beta subunit of integration host factor (IHFB)	NA|520aa|down_9|NZ_CP045564.1_1708197_1709757_+	pfam10150, RNase_E_G, Ribonuclease E/G family
GCF_009496935.1_ASM949693v1	NZ_CP045564	Riemerella anatipestifer strain RA-LZ01 chromosome, complete genome	4	1829998-1830257	4	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,cas2,cas1,cas9,Csx28,cas13b	Orphan	GGTTCTAGGCTAAGTCGCCTAGGTTCGTT	29	0	0	NA	NA	NA	3	3	Orphan	csa3,cas3,WYL,DEDDh,cas2,cas1,cas9,Csx28,cas13b	NA|406aa|up_8|NZ_CP045564.1_1818362_1819580_-,NA|546aa|down_4|NZ_CP045564.1_1835030_1836668_+,NA|262aa|down_8|NZ_CP045564.1_1839926_1840712_+	NA|349aa|up_9|NZ_CP045564.1_1817242_1818289_+	pfam01266, DAO, FAD dependent oxidoreductase	NA|406aa|up_8|NZ_CP045564.1_1818362_1819580_-	NA	NA|851aa|up_7|NZ_CP045564.1_1819617_1822170_-	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor	NA|226aa|up_6|NZ_CP045564.1_1822433_1823111_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|341aa|up_5|NZ_CP045564.1_1823118_1824141_+	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR	NA|220aa|up_4|NZ_CP045564.1_1824223_1824883_+	pfam04264, YceI, YceI-like domain	NA|1120aa|up_3|NZ_CP045564.1_1824936_1828296_-	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	NA|138aa|up_2|NZ_CP045564.1_1828494_1828908_+	cd16964, YqgF, putative pre-16S rRNA nuclease YqgF and RuvX family	NA|191aa|up_1|NZ_CP045564.1_1828904_1829477_+	PRK00150, def, peptide deformylase; Reviewed	NA|141aa|up_0|NZ_CP045564.1_1829504_1829927_+	pfam18347, DUF5606, Domain of unknown function (DUF5606)	NA|258aa|down_0|NZ_CP045564.1_1830466_1831240_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|249aa|down_1|NZ_CP045564.1_1831270_1832017_+	COG0169, AroE, Shikimate 5-dehydrogenase [Amino acid transport and metabolism]	NA|605aa|down_2|NZ_CP045564.1_1832096_1833911_+	pfam03993, DUF349, Domain of Unknown Function (DUF349)	NA|340aa|down_3|NZ_CP045564.1_1834005_1835025_+	TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD	NA|546aa|down_4|NZ_CP045564.1_1835030_1836668_+	NA	NA|515aa|down_5|NZ_CP045564.1_1836693_1838238_-	NF033449, BREX_PglZ_3, BREX-3 system phosphatase PglZ	NA|292aa|down_6|NZ_CP045564.1_1838387_1839263_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|167aa|down_7|NZ_CP045564.1_1839411_1839912_+	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|262aa|down_8|NZ_CP045564.1_1839926_1840712_+	NA	NA|229aa|down_9|NZ_CP045564.1_1840706_1841393_-	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase
GCF_009496935.1_ASM949693v1	NZ_CP045564	Riemerella anatipestifer strain RA-LZ01 chromosome, complete genome	5	2139261-2139363	5	CRISPRCasFinder	no		csa3,cas3,WYL,DEDDh,cas2,cas1,cas9,Csx28,cas13b	Orphan	GTTGCGAACTATCACAAAGATAGTA	25	0	0	NA	NA	NA	1	1	Orphan	csa3,cas3,WYL,DEDDh,cas2,cas1,cas9,Csx28,cas13b	NA|161aa|up_8|NZ_CP045564.1_2133544_2134027_-,NA|153aa|up_5|NZ_CP045564.1_2135593_2136052_-,NA|107aa|up_1|NZ_CP045564.1_2137708_2138029_-,NA|110aa|down_0|NZ_CP045564.1_2139365_2139695_-,NA|91aa|down_1|NZ_CP045564.1_2139784_2140057_-,NA|84aa|down_2|NZ_CP045564.1_2140053_2140305_-,NA|122aa|down_3|NZ_CP045564.1_2140311_2140677_-,NA|70aa|down_4|NZ_CP045564.1_2140677_2140887_-,NA|250aa|down_5|NZ_CP045564.1_2141225_2141975_-,NA|82aa|down_6|NZ_CP045564.1_2141998_2142244_-,NA|106aa|down_8|NZ_CP045564.1_2142643_2142961_-,NA|62aa|down_9|NZ_CP045564.1_2142939_2143125_-	NA|433aa|up_9|NZ_CP045564.1_2132151_2133450_-	COG1783, XtmB, Phage terminase large subunit [General function prediction only]	NA|161aa|up_8|NZ_CP045564.1_2133544_2134027_-	NA	NA|242aa|up_7|NZ_CP045564.1_2134016_2134742_-	cd16401, ParB_N_like_MT, ParB N-terminal-like domain, some attached to C-terminal S-adenosylmethionine-dependent methyltransferase domain	NA|235aa|up_6|NZ_CP045564.1_2134716_2135421_-	cd01713, PAPS_reductase, This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase	NA|153aa|up_5|NZ_CP045564.1_2135593_2136052_-	NA	NA|143aa|up_4|NZ_CP045564.1_2136048_2136477_-	pfam05766, NinG, Bacteriophage Lambda NinG protein	NA|105aa|up_3|NZ_CP045564.1_2136579_2136894_-	pfam10902, WYL_2, WYL_2, Sm-like SH3 beta-barrel fold	NA|250aa|up_2|NZ_CP045564.1_2136956_2137706_-	pfam03374, ANT, Phage antirepressor protein KilAC domain	NA|107aa|up_1|NZ_CP045564.1_2137708_2138029_-	NA	NA|275aa|up_0|NZ_CP045564.1_2138301_2139126_-	PRK11525, dinD, DNA-damage-inducible protein D; Provisional	NA|110aa|down_0|NZ_CP045564.1_2139365_2139695_-	NA	NA|91aa|down_1|NZ_CP045564.1_2139784_2140057_-	NA	NA|84aa|down_2|NZ_CP045564.1_2140053_2140305_-	NA	NA|122aa|down_3|NZ_CP045564.1_2140311_2140677_-	NA	NA|70aa|down_4|NZ_CP045564.1_2140677_2140887_-	NA	NA|250aa|down_5|NZ_CP045564.1_2141225_2141975_-	NA	NA|82aa|down_6|NZ_CP045564.1_2141998_2142244_-	NA	NA|99aa|down_7|NZ_CP045564.1_2142240_2142537_-	cd11540, NTP-PPase_u3, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3	NA|106aa|down_8|NZ_CP045564.1_2142643_2142961_-	NA	NA|62aa|down_9|NZ_CP045564.1_2142939_2143125_-	NA
