The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP045562	Lactobacillus fructivorans strain LF543 chromosome, complete genome	1388767	453078	562928	1388767	capsid,tRNA,terminase,head,protease,tail,portal,integrase	Lactobacillus_phage(46.81%)	107	460297:460314	496176:496193
WP_010022802.1|453078_455094_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	K4FB40	Cronobacter_phage	40.1	3.0e-118
WP_010022803.1|455255_455450_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010022804.1|455563_455830_+	phosphocarrier protein HPr	NA	NA	NA	NA	NA
WP_010022805.1|455831_457562_+	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA	NA
WP_010022806.1|457664_458849_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_056936301.1|458861_459884_+	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_010022810.1|459888_460953_+	flippase-like domain-containing protein	NA	NA	NA	NA	NA
460297:460314	attL	ATTGCTTTAATTATTGGA	NA	NA	NA	NA
WP_010022811.1|460954_463015_+	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	45.0	2.5e-149
WP_010021731.1|470176_471541_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010021730.1|471542_472778_+	cytosine deaminase	NA	NA	NA	NA	NA
WP_010021729.1|472854_473910_+	zinc-dependent alcohol dehydrogenase family protein	NA	K7Z7U2	Megavirus	26.8	1.5e-25
WP_010021728.1|474137_475439_+	uracil transporter	NA	Q9KX94	Enterobacteria_phage	36.7	2.5e-62
WP_010021726.1|475762_476542_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_010021724.1|476572_477289_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_010021723.1|477288_478026_+	amino acid ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	39.1	2.5e-30
WP_010021722.1|478061_478757_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010021721.1|478944_480132_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	67.9	3.5e-143
WP_010021719.1|480195_481665_+	MFS transporter	NA	NA	NA	NA	NA
WP_010021717.1|481661_482237_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	47.4	5.4e-41
WP_010021716.1|482573_484991_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	69.3	0.0e+00
WP_050780887.1|485145_486756_+	polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_010021714.1|486808_487633_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA	NA
WP_010021712.1|487744_489148_+	dipeptidase PepV	NA	NA	NA	NA	NA
WP_010021710.1|489189_489822_-	deoxyadenosine kinase	NA	C1KFI3	Lactobacillus_virus	47.0	1.2e-44
WP_010021709.1|489979_490666_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_010021707.1|490677_491307_+	miniconductance mechanosensitive channel MscM	NA	NA	NA	NA	NA
WP_010021706.1|491306_491807_+	hypothetical protein	NA	A0A291I9Q0	Lactobacillus_phage	59.5	4.4e-47
WP_010021705.1|491841_492069_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010021703.1|493188_493350_+	hypothetical protein	NA	NA	NA	NA	NA
WP_115791446.1|493602_494460_+	glycosyltransferase family 8 protein	NA	NA	NA	NA	NA
WP_010021700.1|494850_495972_-|integrase	site-specific integrase	integrase	D6PSS4	Lactobacillus_phage	34.7	1.4e-53
WP_010021699.1|496112_496487_-	hypothetical protein	NA	NA	NA	NA	NA
496176:496193	attR	TCCAATAATTAAAGCAAT	NA	NA	NA	NA
WP_010021698.1|496546_496900_-	hypothetical protein	NA	A0A1B0Y2S4	Lactobacillus_phage	34.5	3.5e-14
WP_010021696.1|497165_497486_-	hypothetical protein	NA	NA	NA	NA	NA
WP_082587779.1|497522_497930_-	helix-turn-helix transcriptional regulator	NA	Q9T1J3	Lactobacillus_phage	38.1	9.8e-13
WP_010021688.1|498109_498319_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010021687.1|498324_498465_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010021683.1|498870_499125_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029327108.1|499105_499345_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010021681.1|499408_499621_+	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	40.8	3.9e-05
WP_010021680.1|499674_499881_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010021679.1|499855_500377_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010021677.1|500432_500690_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_010021674.1|500924_501404_+	hypothetical protein	NA	A0A0A1EL06	Lactobacillus_phage	41.8	4.7e-22
WP_050780876.1|501406_502147_+	DUF1071 domain-containing protein	NA	X2CXM9	Lactobacillus_phage	47.0	4.4e-27
WP_010021672.1|502143_502566_+	single-stranded DNA-binding protein	NA	Q9AZV6	Lactococcus_phage	46.8	1.5e-27
WP_010021671.1|502586_503402_+	hypothetical protein	NA	Q9MC23	Lactococcus_phage	43.8	1.1e-18
WP_010021669.1|503418_504147_+	phage regulatory protein/antirepressor Ant	NA	B4XYR8	Lactobacillus_phage	56.2	8.3e-63
WP_081454146.1|504130_504538_+	DUF1064 domain-containing protein	NA	A0A1P8BMB7	Lactococcus_phage	37.3	5.2e-14
WP_010021667.1|504550_504973_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010021666.1|505298_505721_+	autolysin regulatory protein arpU	NA	A8YQN1	Lactobacillus_phage	33.3	3.0e-12
WP_010021665.1|506211_506727_+	HNH endonuclease	NA	E9LUP7	Lactobacillus_phage	57.3	8.5e-46
WP_081454149.1|507003_507507_+|terminase	phage terminase small subunit P27 family	terminase	Q5K5J8	Oenococcus_phage	57.9	9.9e-31
WP_010021662.1|507503_509390_+|terminase	terminase large subunit	terminase	E9LUP9	Lactobacillus_phage	57.9	9.3e-215
WP_010021660.1|509405_509603_+	DUF1056 family protein	NA	E9LUQ0	Lactobacillus_phage	46.9	1.3e-07
WP_010021659.1|509602_510712_+|portal	phage portal protein	portal	E9LUQ1	Lactobacillus_phage	53.6	3.6e-102
WP_010021658.1|510731_511451_+|protease	Clp protease ClpP	protease	E9LUQ2	Lactobacillus_phage	40.9	5.0e-36
WP_010021657.1|511468_512695_+|capsid	phage major capsid protein	capsid	E9LUQ3	Lactobacillus_phage	44.9	1.6e-90
WP_010021655.1|512700_513030_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6QQY5	Streptococcus_phage	35.8	5.7e-11
WP_081454145.1|513007_513367_+|head	phage head closure protein	head	A0A0M7RFE1	Lactobacillus_phage	37.5	1.2e-14
WP_010021652.1|513356_513776_+	HK97 family phage protein	NA	A0A0M7RDL2	Lactobacillus_phage	43.1	1.0e-12
WP_082587780.1|513747_514140_+	DUF806 family protein	NA	A0A286QP65	Streptococcus_phage	31.1	5.9e-07
WP_010021650.1|514155_514749_+|tail	major tail protein	tail	Q9AZS2	Lactococcus_phage	30.2	1.1e-07
WP_029327105.1|514852_515305_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010021648.1|515361_515520_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010021647.1|515536_520321_+	tape measure protein	NA	E9LUR1	Lactobacillus_phage	38.0	4.3e-99
WP_010021644.1|520320_521160_+|tail	phage tail family protein	tail	A0A0M7RF73	Lactobacillus_phage	58.7	1.1e-93
WP_010021643.1|521171_522401_+	hypothetical protein	NA	A0A0M9JJD9	Lactobacillus_phage	41.2	6.1e-90
WP_010021641.1|522400_524188_+	minor structural protein, putative	NA	A0A0M7RDS2	Lactobacillus_phage	61.4	3.0e-199
WP_010021639.1|524200_524740_+	hypothetical protein	NA	A0A0M7RFE2	Lactobacillus_phage	43.8	1.2e-34
WP_010021638.1|524739_525255_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010021636.1|525269_525773_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010021635.1|525789_526185_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010021634.1|526187_526334_+	XkdX family protein	NA	NA	NA	NA	NA
WP_115791449.1|526409_526469_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010021632.1|526648_526921_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010021630.1|526904_527840_+	N-acetylmuramidase	NA	Q9MCC8	Lactobacillus_phage	44.9	8.2e-39
WP_010021627.1|529330_529789_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010021625.1|529996_531544_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	NA	NA	NA	NA	NA
WP_010021624.1|531533_532790_+	carboxylate--amine ligase	NA	NA	NA	NA	NA
WP_056936272.1|532794_533517_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA	NA
WP_010021621.1|533532_533868_-	DUF1516 family protein	NA	NA	NA	NA	NA
WP_010021618.1|534254_535946_+|tRNA	arginine--tRNA ligase	tRNA	A0A2I2L3K1	Orpheovirus	33.8	1.4e-73
WP_010021617.1|536051_538169_+	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_010021616.1|538222_538570_+	hypothetical protein	NA	NA	NA	NA	NA
WP_115791445.1|538614_539841_+	DNA repair exonuclease	NA	NA	NA	NA	NA
WP_010021614.1|539830_542395_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_010021612.1|542410_543370_+	HD domain-containing protein	NA	NA	NA	NA	NA
WP_010021610.1|543404_544289_-	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_010021609.1|544408_544705_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010021608.1|544708_545149_-	HIT family protein	NA	D7NW73	Streptomyces_phage	31.7	1.6e-08
WP_010021607.1|545268_546006_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.0	2.0e-19
WP_081454143.1|545989_547213_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_010021605.1|547222_547864_+|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	tRNA	NA	NA	NA	NA
WP_010021604.1|547860_548184_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010021602.1|548274_548598_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_010021601.1|548616_549255_+|tRNA	DUF4479 and tRNA-binding domain-containing protein	tRNA	NA	NA	NA	NA
WP_115791448.1|549761_551588_+	DNA translocase FtsK	NA	G1FGP1	Mycobacterium_phage	50.3	7.9e-86
WP_029327102.1|551666_552998_+	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
WP_010021598.1|553011_553713_+	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA	NA
WP_153218749.1|553808_556472_+	DNA polymerase I	NA	D9ZNH3	Clostridium_phage	32.1	6.0e-58
WP_010021596.1|556484_557327_+	DNA-formamidopyrimidine glycosylase	NA	G3MA33	Bacillus_virus	32.8	7.4e-31
WP_010021594.1|557319_557910_+	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_010021591.1|557927_558419_+	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_010021590.1|558415_559759_+	replication initiation and membrane attachment protein	NA	NA	NA	NA	NA
WP_010021589.1|559761_560688_+	primosomal protein DnaI	NA	S5MU12	Brevibacillus_phage	35.6	3.4e-29
WP_040472242.1|560948_562928_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	34.3	1.4e-96
>prophage 2
NZ_CP045562	Lactobacillus fructivorans strain LF543 chromosome, complete genome	1388767	668367	681046	1388767	tRNA,protease	Staphylococcus_phage(22.22%)	12	NA	NA
WP_010021437.1|668367_669822_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A173GFL6	Erwinia_phage	28.9	2.7e-44
WP_010021436.1|669837_670380_-	HslU--HslV peptidase proteolytic subunit	NA	NA	NA	NA	NA
WP_010021435.1|670399_671332_-	tyrosine recombinase XerC	NA	S5M872	Bacillus_phage	28.8	1.0e-17
WP_010021434.1|671415_673533_-	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	36.4	3.0e-97
WP_056936279.1|673623_674496_-	DNA-protecting protein DprA	NA	S6BFL3	Thermus_phage	33.3	1.6e-20
WP_010021430.1|674528_675293_-	ribonuclease HII	NA	A0A0N9QYD4	Chrysochromulina_ericina_virus	39.0	1.2e-19
WP_010021429.1|675282_676158_-	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
WP_010021427.1|676173_676395_-	YozE family protein	NA	NA	NA	NA	NA
WP_010021426.1|676409_676904_-	dihydrofolate reductase	NA	A0A0N9S8H6	Staphylococcus_phage	34.8	2.0e-23
WP_010021425.1|676913_677864_-	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	63.1	1.3e-119
WP_010021424.1|677891_679820_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2H4UUX5	Bodo_saltans_virus	27.5	1.1e-48
WP_010021423.1|679834_681046_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	33.6	1.1e-48
>prophage 3
NZ_CP045562	Lactobacillus fructivorans strain LF543 chromosome, complete genome	1388767	999969	1006330	1388767		Streptococcus_phage(33.33%)	6	NA	NA
WP_010021863.1|999969_1000626_+	helix-turn-helix transcriptional regulator	NA	D2XQ11	Bacillus_virus	38.5	1.5e-07
WP_010021862.1|1000817_1002734_+	asparagine synthase (glutamine-hydrolyzing)	NA	R4TIC1	Phaeocystis_globosa_virus	27.8	3.2e-29
WP_010021861.1|1002832_1003426_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	52.3	5.7e-54
WP_010021859.1|1003496_1004429_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	38.8	7.2e-51
WP_010021857.1|1004440_1005448_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	53.3	1.0e-90
WP_010021855.1|1005448_1006330_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	33.6	1.3e-09
>prophage 4
NZ_CP045562	Lactobacillus fructivorans strain LF543 chromosome, complete genome	1388767	1042420	1051517	1388767		Streptococcus_phage(33.33%)	11	NA	NA
WP_010021801.1|1042420_1043446_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	36.6	2.3e-34
WP_010021798.1|1043454_1043781_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010021797.1|1043792_1044443_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	50.7	5.9e-52
WP_039144534.1|1044540_1044786_-	YaaL family protein	NA	NA	NA	NA	NA
WP_010021794.1|1044796_1045396_-	recombination protein RecR	NA	NA	NA	NA	NA
WP_029327116.1|1045413_1045731_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_056936291.1|1045743_1047543_-	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	38.9	3.1e-58
WP_010021789.1|1047809_1048274_-	nucleoside deaminase	NA	A0A2H4PQS8	Staphylococcus_phage	29.5	8.6e-05
WP_010021787.1|1048288_1048882_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_010021786.1|1049042_1049273_+	glutaredoxin-like protein NrdH	NA	A0A249XUR7	Enterococcus_phage	50.0	4.4e-10
WP_010021784.1|1049351_1051517_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	63.1	1.3e-268
