assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009497755.1_ASM949775v1	NZ_CP026023	Klebsiella pneumoniae strain 11420 chromosome, complete genome	1	1458222-1458317	1	CRISPRCasFinder	no		cas3,csa3,RT,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL	Orphan	TTGTGCCAACAGAATGCCAACAGAGTGCCA	30	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,RT,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL	NA|97aa|up_7|NZ_CP026023.1_1453753_1454044_-,NA|66aa|up_5|NZ_CP026023.1_1454832_1455030_-,NA|145aa|down_2|NZ_CP026023.1_1460445_1460880_+,NA|69aa|down_3|NZ_CP026023.1_1460876_1461083_+,NA|169aa|down_6|NZ_CP026023.1_1461805_1462312_+,NA|74aa|down_7|NZ_CP026023.1_1462304_1462526_+,NA|191aa|down_8|NZ_CP026023.1_1462896_1463469_+	NA|219aa|up_9|NZ_CP026023.1_1452798_1453455_-	COG4725, IME4, Transcriptional activator, adenine-specific DNA methyltransferase [Signal transduction mechanisms / Transcription]	NA|102aa|up_8|NZ_CP026023.1_1453451_1453757_-	pfam13936, HTH_38, Helix-turn-helix domain	NA|97aa|up_7|NZ_CP026023.1_1453753_1454044_-	NA	NA|218aa|up_6|NZ_CP026023.1_1454027_1454681_-	pfam04404, ERF, ERF superfamily	NA|66aa|up_5|NZ_CP026023.1_1454832_1455030_-	NA	NA|171aa|up_4|NZ_CP026023.1_1455037_1455550_-	PHA00280, PHA00280, putative NHN endonuclease	NA|69aa|up_3|NZ_CP026023.1_1455608_1455815_-	PRK11354, kil, FtsZ inhibitor protein; Reviewed	NA|230aa|up_2|NZ_CP026023.1_1456278_1456968_-	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|78aa|up_1|NZ_CP026023.1_1457095_1457329_+	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|95aa|up_0|NZ_CP026023.1_1457369_1457654_+	pfam05269, Phage_CII, Bacteriophage CII protein	NA|477aa|down_0|NZ_CP026023.1_1458716_1460147_+	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily	NA|101aa|down_1|NZ_CP026023.1_1460146_1460449_+	pfam12802, MarR_2, MarR family	NA|145aa|down_2|NZ_CP026023.1_1460445_1460880_+	NA	NA|69aa|down_3|NZ_CP026023.1_1460876_1461083_+	NA	NA|188aa|down_4|NZ_CP026023.1_1461079_1461643_+	pfam13935, Ead_Ea22, Ead/Ea22-like protein	NA|57aa|down_5|NZ_CP026023.1_1461642_1461813_+	PRK12900, secA, preprotein translocase subunit SecA; Reviewed	NA|169aa|down_6|NZ_CP026023.1_1461805_1462312_+	NA	NA|74aa|down_7|NZ_CP026023.1_1462304_1462526_+	NA	NA|191aa|down_8|NZ_CP026023.1_1462896_1463469_+	NA	NA|139aa|down_9|NZ_CP026023.1_1463470_1463887_+	pfam13957, YafO_toxin, Toxin YafO, type II toxin-antitoxin system
GCF_009497755.1_ASM949775v1	NZ_CP026023	Klebsiella pneumoniae strain 11420 chromosome, complete genome	2	2377164-2377741	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2	cas3,csa3,RT,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL	Type I-E	GTCTTCCCCACACGCGTGGGGGTGTTTC,GTCTTCCCCACACGCGTGGGGGTGTTTC,GTCTTCCCCACACGCGTGGGGGTGTTTC	28,28,28	0	0	NA	NA	I-E,II-B:I-E,II-B:I-E,II-B	6,9,9	9	TypeI-E	cas3,csa3,RT,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL	NA,NA	NA|131aa|up_9|NZ_CP026023.1_2363663_2364056_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|411aa|up_8|NZ_CP026023.1_2364092_2365325_-	PRK15403, PRK15403, multidrug efflux MFS transporter MdtM	NA|145aa|up_7|NZ_CP026023.1_2365890_2366325_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|400aa|up_6|NZ_CP026023.1_2366441_2367641_-	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily	NA|386aa|up_5|NZ_CP026023.1_2367936_2369094_+	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily	NA|717aa|up_4|NZ_CP026023.1_2369136_2371287_-	TIGR01591, Formate_dehydrogenase_subunit_alpha, formate dehydrogenase, alpha subunit, archaeal-type	NA|360aa|up_3|NZ_CP026023.1_2371534_2372614_-	PRK10098, PRK10098, putative dehydrogenase; Provisional	NA|363aa|up_2|NZ_CP026023.1_2372916_2374005_+	COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]	NA|590aa|up_1|NZ_CP026023.1_2374078_2375848_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|357aa|up_0|NZ_CP026023.1_2375840_2376911_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	cas3|872aa|down_0|NZ_CP026023.1_2378153_2380769_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|508aa|down_1|NZ_CP026023.1_2380772_2382296_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|189aa|down_2|NZ_CP026023.1_2382307_2382874_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas6e|216aa|down_3|NZ_CP026023.1_2382866_2383514_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas7|345aa|down_4|NZ_CP026023.1_2383543_2384578_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|232aa|down_5|NZ_CP026023.1_2384611_2385307_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas1|292aa|down_6|NZ_CP026023.1_2385306_2386182_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|96aa|down_7|NZ_CP026023.1_2386159_2386447_+	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	NA|372aa|down_8|NZ_CP026023.1_2387370_2388486_+	PHA02053, PHA02053, hypothetical protein	NA|228aa|down_9|NZ_CP026023.1_2388496_2389180_+	pfam16277, DUF4926, Domain of unknown function (DUF4926)
GCF_009497755.1_ASM949775v1	NZ_CP026023	Klebsiella pneumoniae strain 11420 chromosome, complete genome	3	2386495-2387133	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2	cas3,csa3,RT,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL	Type I-E	GTCTTCCCCACGCACGTGGGGGTGTTTC,GTCTTCCCCACGCACGTGGGGGTGTTTCT,GTCTTCCCCACGCACGTGGGGGTGTTTC	28,29,28	0	0	NA	NA	I-B,III-A,III-B:I-B,III-A,III-B:I-B,III-A,III-B	10,10,10	10	TypeI-E	cas3,csa3,RT,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL	NA,NA	NA|590aa|up_9|NZ_CP026023.1_2374078_2375848_+	COG1178, ThiP, ABC-type Fe3+ transport system, permease component [Inorganic ion transport and metabolism]	NA|357aa|up_8|NZ_CP026023.1_2375840_2376911_+	COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]	cas3|872aa|up_7|NZ_CP026023.1_2378153_2380769_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|508aa|up_6|NZ_CP026023.1_2380772_2382296_+	cd09729, Cse1_I-E, CRISPR/Cas system-associated protein Cse1	cse2gr11|189aa|up_5|NZ_CP026023.1_2382307_2382874_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas6e|216aa|up_4|NZ_CP026023.1_2382866_2383514_+	cd09727, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas7|345aa|up_3|NZ_CP026023.1_2383543_2384578_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|232aa|up_2|NZ_CP026023.1_2384611_2385307_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas1|292aa|up_1|NZ_CP026023.1_2385306_2386182_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|96aa|up_0|NZ_CP026023.1_2386159_2386447_+	cd09648, Cas2_I-E, CRISPR/Cas system-associated protein Cas2	NA|372aa|down_0|NZ_CP026023.1_2387370_2388486_+	PHA02053, PHA02053, hypothetical protein	NA|228aa|down_1|NZ_CP026023.1_2388496_2389180_+	pfam16277, DUF4926, Domain of unknown function (DUF4926)	NA|124aa|down_2|NZ_CP026023.1_2389240_2389612_-	cd07262, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|251aa|down_3|NZ_CP026023.1_2390116_2390869_+	pfam13618, Gluconate_2-dh3, Gluconate 2-dehydrogenase subunit 3	NA|595aa|down_4|NZ_CP026023.1_2390871_2392656_+	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]	NA|446aa|down_5|NZ_CP026023.1_2392669_2394007_+	pfam00034, Cytochrom_C, Cytochrome c	NA|208aa|down_6|NZ_CP026023.1_2394090_2394714_+	PRK13538, PRK13538, cytochrome c biogenesis heme-transporting ATPase CcmA	NA|220aa|down_7|NZ_CP026023.1_2394710_2395370_+	TIGR01190, Heme_exporter_protein_B, heme exporter protein CcmB	NA|246aa|down_8|NZ_CP026023.1_2395419_2396157_+	TIGR01191, Heme_exporter_protein_C, heme exporter protein CcmC	NA|77aa|down_9|NZ_CP026023.1_2396153_2396384_+	COG3114, CcmD, Heme exporter protein D [Intracellular trafficking and secretion]
GCF_009497755.1_ASM949775v1	NZ_CP026023	Klebsiella pneumoniae strain 11420 chromosome, complete genome	4	4385159-4385298	4	CRISPRCasFinder	no	DEDDh	cas3,csa3,RT,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL	Unclear	TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACCGAAGCAGCAG	50	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,RT,DEDDh,DinG,cas8e,cse2gr11,cas6e,cas7,cas5,cas1,cas2,WYL	NA,NA	NA|266aa|up_9|NZ_CP026023.1_4376565_4377363_+	cd05344, BKR_like_SDR_like, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR	NA|139aa|up_8|NZ_CP026023.1_4377395_4377812_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|71aa|up_7|NZ_CP026023.1_4377969_4378182_+	pfam07338, DUF1471, Protein of unknown function (DUF1471)	NA|133aa|up_6|NZ_CP026023.1_4378550_4378949_-	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|415aa|up_5|NZ_CP026023.1_4379006_4380251_-	PRK05077, frsA, esterase FrsA	NA|153aa|up_4|NZ_CP026023.1_4380356_4380815_-	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|486aa|up_3|NZ_CP026023.1_4381072_4382530_+	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|151aa|up_2|NZ_CP026023.1_4382572_4383025_-	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|352aa|up_1|NZ_CP026023.1_4383027_4384083_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|287aa|up_0|NZ_CP026023.1_4384242_4385103_+	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins	NA|72aa|down_0|NZ_CP026023.1_4385325_4385541_-	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown]	NA|408aa|down_1|NZ_CP026023.1_4385543_4386767_-	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional	NA|199aa|down_2|NZ_CP026023.1_4386779_4387376_-	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional	NA|213aa|down_3|NZ_CP026023.1_4387382_4388021_-	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated	NA|265aa|down_4|NZ_CP026023.1_4388013_4388808_-	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional	NA|413aa|down_5|NZ_CP026023.1_4388800_4390039_-	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional	NA|448aa|down_6|NZ_CP026023.1_4390042_4391386_-	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional	NA|247aa|down_7|NZ_CP026023.1_4391797_4392538_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_8|NZ_CP026023.1_4392508_4393276_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|194aa|down_9|NZ_CP026023.1_4393350_4393932_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase
