assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009497875.1_ASM949787v1	NZ_CP032508	Gamma proteobacterium SS-5 chromosome, complete genome	1	1076623-1076767	1	CRISPRCasFinder	no		DEDDh,csa3,DinG,Cas9_archaeal,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,PD-DExK,cas6,casR,csx1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx16,PrimPol	Orphan	TTTTTGGCTCTCTGCGTCCTTTGCGCTCCTTTGCGTCCTCTGCGTCCCAT	50	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,DinG,Cas9_archaeal,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,PD-DExK,cas6,casR,csx1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx16,PrimPol	NA,NA	NA|227aa|up_9|NZ_CP032508.1_1066482_1067163_+	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|526aa|up_8|NZ_CP032508.1_1067171_1068749_+	cd16010, iPGM, 2 3 bisphosphoglycerate independent phosphoglycerate mutase iPGM	NA|719aa|up_7|NZ_CP032508.1_1068973_1071130_+	TIGR04344, generic_methyltransferase, 5-histidylcysteine sulfoxide synthase	NA|133aa|up_6|NZ_CP032508.1_1071153_1071552_+	pfam06146, PsiE, Phosphate-starvation-inducible E	NA|111aa|up_5|NZ_CP032508.1_1071939_1072272_+	pfam17228, SGP, Sulphur globule protein	NA|230aa|up_4|NZ_CP032508.1_1072289_1072979_+	pfam07486, Hydrolase_2, Cell Wall Hydrolase	NA|139aa|up_3|NZ_CP032508.1_1072998_1073415_-	COG1238, COG1238, Predicted membrane protein [Function unknown]	NA|225aa|up_2|NZ_CP032508.1_1073460_1074135_-	COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only]	NA|332aa|up_1|NZ_CP032508.1_1074107_1075103_-	pfam12224, Amidoligase_2, Putative amidoligase enzyme	NA|273aa|up_0|NZ_CP032508.1_1075349_1076168_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|353aa|down_0|NZ_CP032508.1_1076798_1077857_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|196aa|down_1|NZ_CP032508.1_1077834_1078422_-	PLN02794, PLN02794, cardiolipin synthase	NA|370aa|down_2|NZ_CP032508.1_1078428_1079538_-	pfam09839, DUF2066, Uncharacterized protein conserved in bacteria (DUF2066)	NA|352aa|down_3|NZ_CP032508.1_1079635_1080691_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|234aa|down_4|NZ_CP032508.1_1080690_1081392_+	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed	NA|687aa|down_5|NZ_CP032508.1_1081413_1083474_-	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS	NA|279aa|down_6|NZ_CP032508.1_1083474_1084311_-	cd13517, PBP2_ModA3_like, Substrate binding domain of molybdate binding protein-like (ModA3), a member of the type 2 periplasmic binding fold superfamily	NA|189aa|down_7|NZ_CP032508.1_1084418_1084985_-	PRK00416, dcd, deoxycytidine triphosphate deaminase; Reviewed	NA|342aa|down_8|NZ_CP032508.1_1085239_1086265_+	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism]	NA|900aa|down_9|NZ_CP032508.1_1086261_1088961_+	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase
GCF_009497875.1_ASM949787v1	NZ_CP032508	Gamma proteobacterium SS-5 chromosome, complete genome	2	1177718-1177808	2	CRISPRCasFinder	no	RT	DEDDh,csa3,DinG,Cas9_archaeal,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,PD-DExK,cas6,casR,csx1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx16,PrimPol	Unclear	TGGAATTTTGCAAACAAAGTGAGTGTC	27	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,DinG,Cas9_archaeal,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,PD-DExK,cas6,casR,csx1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx16,PrimPol	NA|346aa|up_2|NZ_CP032508.1_1174892_1175930_-,NA|84aa|up_0|NZ_CP032508.1_1177203_1177455_-,NA|1212aa|down_2|NZ_CP032508.1_1181727_1185363_-	NA|94aa|up_9|NZ_CP032508.1_1167606_1167888_-	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|475aa|up_8|NZ_CP032508.1_1168226_1169651_-	pfam13701, DDE_Tnp_1_4, Transposase DDE domain group 1	NA|267aa|up_7|NZ_CP032508.1_1170059_1170860_-	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase)	NA|107aa|up_6|NZ_CP032508.1_1172384_1172705_-	pfam13744, HTH_37, Helix-turn-helix domain	NA|120aa|up_5|NZ_CP032508.1_1172701_1173061_-	COG4679, COG4679, Phage-related protein [Function unknown]	NA|62aa|up_4|NZ_CP032508.1_1173163_1173349_-	pfam10688, Imp-YgjV, Bacterial inner membrane protein	NA|271aa|up_3|NZ_CP032508.1_1174039_1174852_-	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase)	NA|346aa|up_2|NZ_CP032508.1_1174892_1175930_-	NA	NA|271aa|up_1|NZ_CP032508.1_1176240_1177053_-	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase)	NA|84aa|up_0|NZ_CP032508.1_1177203_1177455_-	NA	NA|272aa|down_0|NZ_CP032508.1_1177826_1178642_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|759aa|down_1|NZ_CP032508.1_1178645_1180922_-	pfam13469, Sulfotransfer_3, Sulfotransferase family	NA|1212aa|down_2|NZ_CP032508.1_1181727_1185363_-	NA	NA|148aa|down_3|NZ_CP032508.1_1186288_1186732_-	PRK12704, PRK12704, phosphodiesterase; Provisional	NA|173aa|down_4|NZ_CP032508.1_1187035_1187554_-	PRK12704, PRK12704, phosphodiesterase; Provisional	NA|370aa|down_5|NZ_CP032508.1_1187765_1188875_-	NF033203, entero_EhxA, enterohemolysin EhxA	NA|533aa|down_6|NZ_CP032508.1_1189085_1190684_+	cd04277, ZnMc_serralysin_like, Zinc-dependent metalloprotease, serralysin_like subfamily	NA|276aa|down_7|NZ_CP032508.1_1190962_1191790_+	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|412aa|down_8|NZ_CP032508.1_1191779_1193015_+	cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system	NA|331aa|down_9|NZ_CP032508.1_1193016_1194009_+	pfam13527, Acetyltransf_9, Acetyltransferase (GNAT) domain
GCF_009497875.1_ASM949787v1	NZ_CP032508	Gamma proteobacterium SS-5 chromosome, complete genome	3	1182512-1182610	3	CRISPRCasFinder	no	RT	DEDDh,csa3,DinG,Cas9_archaeal,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,PD-DExK,cas6,casR,csx1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx16,PrimPol	Unclear	TCGGTCTTGCCGCCGCCGCTGATG	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,DinG,Cas9_archaeal,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,PD-DExK,cas6,casR,csx1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx16,PrimPol	NA|346aa|up_4|NZ_CP032508.1_1174892_1175930_-,NA|84aa|up_2|NZ_CP032508.1_1177203_1177455_-,NA|292aa|down_7|NZ_CP032508.1_1194538_1195414_+	NA|267aa|up_9|NZ_CP032508.1_1170059_1170860_-	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase)	NA|107aa|up_8|NZ_CP032508.1_1172384_1172705_-	pfam13744, HTH_37, Helix-turn-helix domain	NA|120aa|up_7|NZ_CP032508.1_1172701_1173061_-	COG4679, COG4679, Phage-related protein [Function unknown]	NA|62aa|up_6|NZ_CP032508.1_1173163_1173349_-	pfam10688, Imp-YgjV, Bacterial inner membrane protein	NA|271aa|up_5|NZ_CP032508.1_1174039_1174852_-	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase)	NA|346aa|up_4|NZ_CP032508.1_1174892_1175930_-	NA	NA|271aa|up_3|NZ_CP032508.1_1176240_1177053_-	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase)	NA|84aa|up_2|NZ_CP032508.1_1177203_1177455_-	NA	NA|272aa|up_1|NZ_CP032508.1_1177826_1178642_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|759aa|up_0|NZ_CP032508.1_1178645_1180922_-	pfam13469, Sulfotransfer_3, Sulfotransferase family	NA|148aa|down_0|NZ_CP032508.1_1186288_1186732_-	PRK12704, PRK12704, phosphodiesterase; Provisional	NA|173aa|down_1|NZ_CP032508.1_1187035_1187554_-	PRK12704, PRK12704, phosphodiesterase; Provisional	NA|370aa|down_2|NZ_CP032508.1_1187765_1188875_-	NF033203, entero_EhxA, enterohemolysin EhxA	NA|533aa|down_3|NZ_CP032508.1_1189085_1190684_+	cd04277, ZnMc_serralysin_like, Zinc-dependent metalloprotease, serralysin_like subfamily	NA|276aa|down_4|NZ_CP032508.1_1190962_1191790_+	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|412aa|down_5|NZ_CP032508.1_1191779_1193015_+	cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system	NA|331aa|down_6|NZ_CP032508.1_1193016_1194009_+	pfam13527, Acetyltransf_9, Acetyltransferase (GNAT) domain	NA|292aa|down_7|NZ_CP032508.1_1194538_1195414_+	NA	NA|387aa|down_8|NZ_CP032508.1_1195583_1196744_+	pfam13489, Methyltransf_23, Methyltransferase domain	NA|361aa|down_9|NZ_CP032508.1_1196781_1197864_+	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]
GCF_009497875.1_ASM949787v1	NZ_CP032508	Gamma proteobacterium SS-5 chromosome, complete genome	4	1225649-1225873	1	CRT	no		DEDDh,csa3,DinG,Cas9_archaeal,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,PD-DExK,cas6,casR,csx1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx16,PrimPol	Orphan	CCCCCTTTTGTAAAGGGGGGAGAAATATN	29	3	31	1225677-1225694|1225677-1225694|1225781-1225799|1225781-1225799|1225781-1225799|1225781-1225799|1225781-1225799|1225781-1225799|1225781-1225799|1225781-1225799|1225781-1225799|1225781-1225799|1225781-1225799|1225781-1225799|1225781-1225799|1225781-1225799|1225781-1225799|1225828-1225845|1225828-1225845|1225828-1225845|1225828-1225845|1225828-1225845|1225828-1225845|1225828-1225845|1225828-1225845|1225828-1225845|1225828-1225845|1225828-1225845|1225828-1225845|1225828-1225845|1225828-1225845	NZ_CP032508.1_1636062-1636045|NZ_CP032508.1_1472596-1472579|NZ_CP032508.1_501937-501955|NZ_CP032508.1_7599-7617|NZ_CP032508.1_82080-82098|NZ_CP032508.1_184565-184583|NZ_CP032508.1_246221-246203|NZ_CP032508.1_283278-283260|NZ_CP032508.1_294118-294136|NZ_CP032508.1_472137-472119|NZ_CP032508.1_1225631-1225649|NZ_CP032508.1_1499262-1499280|NZ_CP032508.1_1879073-1879091|NZ_CP032508.1_1894866-1894848|NZ_CP032508.1_2977092-2977110|NZ_CP032508.1_3428673-3428655|NZ_CP032508.1_3436924-3436906|NZ_CP032508.1_7600-7617|NZ_CP032508.1_82081-82098|NZ_CP032508.1_184566-184583|NZ_CP032508.1_283277-283260|NZ_CP032508.1_294119-294136|NZ_CP032508.1_472136-472119|NZ_CP032508.1_1194235-1194252|NZ_CP032508.1_1225632-1225649|NZ_CP032508.1_1499263-1499280|NZ_CP032508.1_1879074-1879091|NZ_CP032508.1_1894865-1894848|NZ_CP032508.1_2977093-2977110|NZ_CP032508.1_3428672-3428655|NZ_CP032508.1_3436923-3436906	NA	4	4	Orphan	DEDDh,csa3,DinG,Cas9_archaeal,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,PD-DExK,cas6,casR,csx1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx16,PrimPol	NA,NA	NA|309aa|up_9|NZ_CP032508.1_1211448_1212375_-	pfam08242, Methyltransf_12, Methyltransferase domain	NA|939aa|up_8|NZ_CP032508.1_1212376_1215193_-	cd04184, GT2_RfbC_Mx_like, Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis	NA|571aa|up_7|NZ_CP032508.1_1215690_1217403_+	COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]	NA|474aa|up_6|NZ_CP032508.1_1217436_1218858_+	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family	NA|438aa|up_5|NZ_CP032508.1_1218861_1220175_+	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|273aa|up_4|NZ_CP032508.1_1220312_1221131_+	pfam07277, SapC, SapC	NA|167aa|up_3|NZ_CP032508.1_1221358_1221859_-	PRK00131, aroK, shikimate kinase; Reviewed	NA|432aa|up_2|NZ_CP032508.1_1222499_1223795_-	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]	NA|195aa|up_1|NZ_CP032508.1_1223805_1224390_-	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|190aa|up_0|NZ_CP032508.1_1224544_1225114_-	pfam03264, Cytochrom_NNT, NapC/NirT cytochrome c family, N-terminal region	NA|269aa|down_0|NZ_CP032508.1_1225954_1226761_+	PRK09430, djlA, co-chaperone DjlA	NA|613aa|down_1|NZ_CP032508.1_1227081_1228920_+	TIGR01779, Vitamin_B12_transporter_BtuB, TonB-dependent vitamin B12 receptor	NA|282aa|down_2|NZ_CP032508.1_1228913_1229759_+	cd01144, BtuF, Cobalamin binding protein BtuF	NA|275aa|down_3|NZ_CP032508.1_1229770_1230595_-	pfam12048, DUF3530, Protein of unknown function (DUF3530)	NA|231aa|down_4|NZ_CP032508.1_1231129_1231822_+	PRK08883, PRK08883, ribulose-phosphate 3-epimerase; Provisional	NA|126aa|down_5|NZ_CP032508.1_1231872_1232250_+	TIGR04256, conserved_hypothetical_protein, GxxExxY protein	NA|226aa|down_6|NZ_CP032508.1_1232305_1232983_+	PRK13222, PRK13222, N-acetylmuramic acid 6-phosphate phosphatase MupP	NA|456aa|down_7|NZ_CP032508.1_1233198_1234566_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|285aa|down_8|NZ_CP032508.1_1234772_1235627_+	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown]	NA|229aa|down_9|NZ_CP032508.1_1235686_1236373_+	PRK10696, PRK10696, tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
GCF_009497875.1_ASM949787v1	NZ_CP032508	Gamma proteobacterium SS-5 chromosome, complete genome	5	1339455-1349939	4,2,1	CRISPRCasFinder,CRT,PILER-CR	no	DinG,DEDDh,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,csa3,DinG,Cas9_archaeal,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,PD-DExK,cas6,casR,csx1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx16,PrimPol	Type I-E	CGGTTCATCCCCGCAGGCGCGGGGAACAC,CGGTTCATCCCCGCAGGCGCGGGGAACAC,CGGTTCATCCCCGCAGGCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	171,171,142	171	TypeI-E	DEDDh,csa3,DinG,Cas9_archaeal,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,PD-DExK,cas6,casR,csx1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx16,PrimPol	NA|62aa|up_1|NZ_CP032508.1_1338713_1338899_-,NA|157aa|up_0|NZ_CP032508.1_1338915_1339386_-,NA|92aa|down_2|NZ_CP032508.1_1351541_1351817_+,NA|118aa|down_3|NZ_CP032508.1_1351860_1352214_+	NA|255aa|up_9|NZ_CP032508.1_1327057_1327822_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|164aa|up_8|NZ_CP032508.1_1328042_1328534_-	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms]	NA|658aa|up_7|NZ_CP032508.1_1328720_1330694_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|174aa|up_6|NZ_CP032508.1_1331590_1332112_-	PRK10612, PRK10612, chemotaxis protein CheW	NA|702aa|up_5|NZ_CP032508.1_1332126_1334232_-	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]	NA|121aa|up_4|NZ_CP032508.1_1334273_1334636_-	cd17562, REC_CheY4-like, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY4 and similar CheY family proteins	DinG|423aa|up_3|NZ_CP032508.1_1335382_1336651_-	PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional	DEDDh|484aa|up_2|NZ_CP032508.1_1336813_1338265_-	PRK11779, sbcB, exonuclease I; Provisional	NA|62aa|up_1|NZ_CP032508.1_1338713_1338899_-	NA	NA|157aa|up_0|NZ_CP032508.1_1338915_1339386_-	NA	cas2|103aa|down_0|NZ_CP032508.1_1350076_1350385_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|304aa|down_1|NZ_CP032508.1_1350365_1351277_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	NA|92aa|down_2|NZ_CP032508.1_1351541_1351817_+	NA	NA|118aa|down_3|NZ_CP032508.1_1351860_1352214_+	NA	NA|70aa|down_4|NZ_CP032508.1_1352210_1352420_+	pfam16277, DUF4926, Domain of unknown function (DUF4926)	cas6e|95aa|down_5|NZ_CP032508.1_1352644_1352929_-	pfam08798, CRISPR_assoc, CRISPR associated protein	cas6e|229aa|down_6|NZ_CP032508.1_1353109_1353796_-	smart01101, CRISPR_assoc, This domain forms an anti-parallel beta strand structure with flanking alpha helical regions	cas5|251aa|down_7|NZ_CP032508.1_1353799_1354552_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|352aa|down_8|NZ_CP032508.1_1354556_1355612_-	pfam09344, Cas_CT1975, CT1975-like protein	cse2gr11|169aa|down_9|NZ_CP032508.1_1355652_1356159_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2
GCF_009497875.1_ASM949787v1	NZ_CP032508	Gamma proteobacterium SS-5 chromosome, complete genome	6	1881157-1881243	5	CRISPRCasFinder	no	cas3	DEDDh,csa3,DinG,Cas9_archaeal,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,PD-DExK,cas6,casR,csx1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx16,PrimPol	Unclear	TGCCGGGATCAAAACCCGGTGCCTT	25	0	0	NA	NA	NA	1	1	Unclear	DEDDh,csa3,DinG,Cas9_archaeal,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,PD-DExK,cas6,casR,csx1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx16,PrimPol	NA,NA|135aa|down_6|NZ_CP032508.1_1888358_1888763_+	NA|137aa|up_9|NZ_CP032508.1_1867430_1867841_+	PRK05681, flgC, flagellar basal body rod protein FlgC; Reviewed	NA|123aa|up_8|NZ_CP032508.1_1867881_1868250_+	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit	NA|229aa|up_7|NZ_CP032508.1_1868264_1868951_+	PRK06655, flgD, flagellar hook assembly protein FlgD	NA|442aa|up_6|NZ_CP032508.1_1868986_1870312_+	PRK05682, flgE, flagellar hook protein FlgE; Validated	NA|247aa|up_5|NZ_CP032508.1_1870422_1871163_+	PRK12640, flgF, flagellar basal body rod protein FlgF; Reviewed	NA|1316aa|up_4|NZ_CP032508.1_1871285_1875233_-	TIGR02099, probable_transmembrane_protein, TIGR02099 family protein	NA|486aa|up_3|NZ_CP032508.1_1875324_1876782_-	PRK11712, PRK11712, ribonuclease G; Provisional	cas3|577aa|up_2|NZ_CP032508.1_1877262_1878993_+	PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional	NA|195aa|up_1|NZ_CP032508.1_1879250_1879835_-	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed	NA|318aa|up_0|NZ_CP032508.1_1879926_1880880_-	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|287aa|down_0|NZ_CP032508.1_1881299_1882160_-	PRK00343, ipk, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	NA|196aa|down_1|NZ_CP032508.1_1882137_1882725_-	cd16326, LolB, LolB, an outer membrane lipoprotein receptor	NA|586aa|down_2|NZ_CP032508.1_1882721_1884479_-	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|422aa|down_3|NZ_CP032508.1_1884612_1885878_+	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed	NA|361aa|down_4|NZ_CP032508.1_1886058_1887141_+	PRK00591, prfA, peptide chain release factor 1; Validated	NA|300aa|down_5|NZ_CP032508.1_1887454_1888354_+	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional	NA|135aa|down_6|NZ_CP032508.1_1888358_1888763_+	NA	NA|258aa|down_7|NZ_CP032508.1_1888820_1889594_+	PRK05690, PRK05690, molybdopterin biosynthesis protein MoeB; Provisional	NA|205aa|down_8|NZ_CP032508.1_1889728_1890343_+	COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]	NA|344aa|down_9|NZ_CP032508.1_1890469_1891501_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain
GCF_009497875.1_ASM949787v1	NZ_CP032508	Gamma proteobacterium SS-5 chromosome, complete genome	7	2439554-2439654	6	CRISPRCasFinder	no	cas3	DEDDh,csa3,DinG,Cas9_archaeal,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,PD-DExK,cas6,casR,csx1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx16,PrimPol	Unclear	GTGGGAGCGGGCTTGCCCGCGATTTCTGC	29	0	0	NA	NA	NA	1	1	Unclear	DEDDh,csa3,DinG,Cas9_archaeal,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,PD-DExK,cas6,casR,csx1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx16,PrimPol	NA|373aa|up_0|NZ_CP032508.1_2438312_2439431_-,NA|580aa|down_0|NZ_CP032508.1_2439688_2441428_-,NA|89aa|down_6|NZ_CP032508.1_2446076_2446343_-,NA|76aa|down_7|NZ_CP032508.1_2446576_2446804_-	NA|458aa|up_9|NZ_CP032508.1_2429106_2430480_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|90aa|up_8|NZ_CP032508.1_2430785_2431055_+	pfam11867, DUF3387, Domain of unknown function (DUF3387)	NA|679aa|up_7|NZ_CP032508.1_2431215_2433252_+	pfam13584, BatD, Oxygen tolerance	NA|315aa|up_6|NZ_CP032508.1_2433264_2434209_+	cd12835, EcCorA-like_1, Escherichia coli Mg2+ transporter CorA_like subgroup	NA|221aa|up_5|NZ_CP032508.1_2434238_2434901_-	pfam01292, Ni_hydr_CYTB, Prokaryotic cytochrome b561	NA|346aa|up_4|NZ_CP032508.1_2435095_2436133_-	cd02951, SoxW, SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation	NA|188aa|up_3|NZ_CP032508.1_2436135_2436699_-	PRK11762, nudE, adenosine nucleotide hydrolase NudE; Provisional	NA|328aa|up_2|NZ_CP032508.1_2436907_2437891_-	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1	NA|149aa|up_1|NZ_CP032508.1_2437887_2438334_-	pfam04138, GtrA, GtrA-like protein	NA|373aa|up_0|NZ_CP032508.1_2438312_2439431_-	NA	NA|580aa|down_0|NZ_CP032508.1_2439688_2441428_-	NA	NA|226aa|down_1|NZ_CP032508.1_2441590_2442268_+	PRK14988, PRK14988, GMP/IMP nucleotidase; Provisional	cas3|426aa|down_2|NZ_CP032508.1_2442324_2443602_-	PRK04837, PRK04837, ATP-dependent RNA helicase RhlB; Provisional	NA|109aa|down_3|NZ_CP032508.1_2443727_2444054_+	PRK09381, trxA, thioredoxin TrxA	NA|419aa|down_4|NZ_CP032508.1_2444410_2445667_+	PRK09376, rho, transcription termination factor Rho; Provisional	NA|106aa|down_5|NZ_CP032508.1_2445710_2446028_+	pfam11743, DUF3301, Protein of unknown function (DUF3301)	NA|89aa|down_6|NZ_CP032508.1_2446076_2446343_-	NA	NA|76aa|down_7|NZ_CP032508.1_2446576_2446804_-	NA	NA|164aa|down_8|NZ_CP032508.1_2447085_2447577_+	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated	NA|333aa|down_9|NZ_CP032508.1_2447586_2448585_+	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
GCF_009497875.1_ASM949787v1	NZ_CP032508	Gamma proteobacterium SS-5 chromosome, complete genome	8	2743005-2743119	7	CRISPRCasFinder	no	cas6,csx1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx16	DEDDh,csa3,DinG,Cas9_archaeal,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,PD-DExK,cas6,casR,csx1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx16,PrimPol	Type III-D,Type III-B,Type III-C,Type III-A	TAGGAGATAGCGTCTTAGTGGTTTAGCTATTAGAGC	36	0	0	NA	NA	NA	1	1	TypeIII-D,TypeIII-B,TypeIII-C,TypeIII-A	DEDDh,csa3,DinG,Cas9_archaeal,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,PD-DExK,cas6,casR,csx1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx16,PrimPol	NA,NA|61aa|down_6|NZ_CP032508.1_2748784_2748967_+	NA|394aa|up_9|NZ_CP032508.1_2715745_2716927_+	PRK15030, PRK15030, multidrug efflux RND transporter periplasmic adaptor subunit AcrA	NA|1044aa|up_8|NZ_CP032508.1_2716935_2720067_+	TIGR00915, Probable_aminoglycoside_efflux_pump, The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family	NA|115aa|up_7|NZ_CP032508.1_2720395_2720740_+	pfam04358, DsrC, DsrC like protein	NA|1322aa|up_6|NZ_CP032508.1_2720834_2724800_-	PRK12467, PRK12467, peptide synthase; Provisional	NA|2164aa|up_5|NZ_CP032508.1_2724796_2731288_-	COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|587aa|up_4|NZ_CP032508.1_2731649_2733410_-	COG2192, COG2192, Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]	NA|689aa|up_3|NZ_CP032508.1_2733488_2735555_-	cd07550, P-type_ATPase_HM, P-type heavy metal-transporting ATPase; uncharacterized subfamily	NA|307aa|up_2|NZ_CP032508.1_2735992_2736913_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|279aa|up_1|NZ_CP032508.1_2737138_2737975_+	PRK07118, PRK07118, Fe-S cluster domain-containing protein	NA|1650aa|up_0|NZ_CP032508.1_2738011_2742961_+	TIGR02176, pyruvate_flavodoxin/ferrodoxin_oxidoreductase, pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric	NA|166aa|down_0|NZ_CP032508.1_2743207_2743705_+	PRK00522, tpx, thiol peroxidase	NA|448aa|down_1|NZ_CP032508.1_2743936_2745280_+	TIGR01945, Electron_transport_complex_subunit_C, electron transport complex, RnfABCDGE type, C subunit	NA|351aa|down_2|NZ_CP032508.1_2745565_2746618_+	pfam03116, NQR2_RnfD_RnfE, NQR2, RnfD, RnfE family	NA|231aa|down_3|NZ_CP032508.1_2746874_2747567_+	TIGR01947, Electron_transport_complex_subunit_G, electron transport complex, RnfABCDGE type, G subunit	NA|216aa|down_4|NZ_CP032508.1_2747563_2748211_+	PRK12405, PRK12405, electron transport complex RsxE subunit; Provisional	NA|194aa|down_5|NZ_CP032508.1_2748200_2748782_+	PRK05151, PRK05151, electron transport complex protein RsxA; Provisional	NA|61aa|down_6|NZ_CP032508.1_2748784_2748967_+	NA	NA|413aa|down_7|NZ_CP032508.1_2749228_2750467_-	cd17475, MFS_MT3072_like, Mycobacterium tuberculosis uncharacterized MFS-type transporter MT3072 and similar transporters of the Major Facilitator Superfamily	cas6|314aa|down_8|NZ_CP032508.1_2750875_2751817_+	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6	csx1|389aa|down_9|NZ_CP032508.1_2751809_2752976_+	cd09741, Csx1_III-U, CRISPR/Cas system-associated protein Csx1
GCF_009497875.1_ASM949787v1	NZ_CP032508	Gamma proteobacterium SS-5 chromosome, complete genome	9	2770051-2771413	2,8,3	PILER-CR,CRISPRCasFinder,CRT	no	cas6,csx1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx16,cas2,cas1	DEDDh,csa3,DinG,Cas9_archaeal,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,PD-DExK,cas6,casR,csx1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx16,PrimPol	Type III-D,Type III-B,Type III-C,Type III-A	GTTAGAACCTCAGACCCACAAACAAGGGGATTAAGAC,GTTAGAACCTCAGACCCACAAACAAGGGGATTAAGAC,GTTAGAACCTCAGACCCACAAACAAGGGGATTAAGAC	37,37,37	0	0	NA	NA	NA:NA:NA	19,19,19	19	TypeIII-D,TypeIII-B,TypeIII-C,TypeIII-A	DEDDh,csa3,DinG,Cas9_archaeal,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,PD-DExK,cas6,casR,csx1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx16,PrimPol	NA,NA|373aa|down_1|NZ_CP032508.1_2772743_2773862_+	cmr6gr7|462aa|up_9|NZ_CP032508.1_2761027_2762413_+	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6	csx16|101aa|up_8|NZ_CP032508.1_2762445_2762748_+	pfam09652, Cas_VVA1548, Putative CRISPR-associated protein (Cas_VVA1548)	csx1|787aa|up_7|NZ_CP032508.1_2762985_2765346_+	PRK09358, PRK09358, adenosine deaminase; Provisional	csx1|379aa|up_6|NZ_CP032508.1_2765511_2766648_+	pfam09002, DUF1887, Domain of unknown function (DUF1887)	NA|91aa|up_5|NZ_CP032508.1_2766765_2767038_+	COG4453, COG4453, Uncharacterized protein conserved in bacteria [Function unknown]	NA|178aa|up_4|NZ_CP032508.1_2767037_2767571_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	cas2|95aa|up_3|NZ_CP032508.1_2767602_2767887_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|331aa|up_2|NZ_CP032508.1_2767892_2768885_+	pfam01867, Cas_Cas1, CRISPR associated protein Cas1	cas1|257aa|up_1|NZ_CP032508.1_2768894_2769665_+	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	cas2|104aa|up_0|NZ_CP032508.1_2769664_2769976_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|316aa|down_0|NZ_CP032508.1_2771496_2772444_+	pfam12762, DDE_Tnp_IS1595, ISXO2-like transposase domain	NA|373aa|down_1|NZ_CP032508.1_2772743_2773862_+	NA	NA|330aa|down_2|NZ_CP032508.1_2773951_2774941_-	cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone oxidoreductases	NA|109aa|down_3|NZ_CP032508.1_2775305_2775632_+	TIGR02605, CxxC_CxxC_SSSS, putative regulatory protein, FmdB family	NA|209aa|down_4|NZ_CP032508.1_2775628_2776255_+	COG2928, COG2928, Uncharacterized conserved protein [Function unknown]	NA|597aa|down_5|NZ_CP032508.1_2776334_2778125_+	PRK00476, aspS, aspartyl-tRNA synthetase; Validated	NA|303aa|down_6|NZ_CP032508.1_2778248_2779157_+	pfam04381, RdgC, Putative exonuclease, RdgC	NA|364aa|down_7|NZ_CP032508.1_2779158_2780250_+	PRK05382, PRK05382, chorismate synthase; Validated	NA|383aa|down_8|NZ_CP032508.1_2780532_2781681_+	pfam12832, MFS_1_like, MFS_1 like family	NA|556aa|down_9|NZ_CP032508.1_2781832_2783500_+	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]
GCF_009497875.1_ASM949787v1	NZ_CP032508	Gamma proteobacterium SS-5 chromosome, complete genome	10	3513740-3513810	9	CRISPRCasFinder	no		DEDDh,csa3,DinG,Cas9_archaeal,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,PD-DExK,cas6,casR,csx1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx16,PrimPol	Orphan	GCCCCTGCTCACCGAAAGCCTGC	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,DinG,Cas9_archaeal,RT,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3,PD-DExK,cas6,casR,csx1,cmr1gr7,cas10,cmr3gr5,cmr4gr7,cmr5gr11,cmr6gr7,csx16,PrimPol	NA,NA|162aa|down_2|NZ_CP032508.1_3519182_3519668_-	NA|80aa|up_9|NZ_CP032508.1_3502250_3502490_+	pfam03683, UPF0175, Uncharacterized protein family (UPF0175)	NA|166aa|up_8|NZ_CP032508.1_3502489_3502987_+	COG2405, COG2405, Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]	NA|432aa|up_7|NZ_CP032508.1_3503196_3504492_+	PRK01490, tig, trigger factor; Provisional	NA|206aa|up_6|NZ_CP032508.1_3504523_3505141_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|426aa|up_5|NZ_CP032508.1_3505458_3506736_+	PRK05342, clpX, ATP-dependent Clp protease ATP-binding subunit ClpX	NA|820aa|up_4|NZ_CP032508.1_3506845_3509305_+	COG0466, Lon, ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]	NA|91aa|up_3|NZ_CP032508.1_3509577_3509850_+	cd13831, HU, histone-like DNA-binding protein HU	NA|634aa|up_2|NZ_CP032508.1_3510157_3512059_+	PRK10788, PRK10788, periplasmic folding chaperone; Provisional	NA|137aa|up_1|NZ_CP032508.1_3512081_3512492_+	COG1832, COG1832, Predicted CoA-binding protein [General function prediction only]	NA|278aa|up_0|NZ_CP032508.1_3512560_3513394_+	COG1291, MotA, Flagellar motor component [Cell motility and secretion]	NA|235aa|down_0|NZ_CP032508.1_3514449_3515154_-	PRK01305, PRK01305, arginyl-tRNA-protein transferase; Provisional	NA|1322aa|down_1|NZ_CP032508.1_3515155_3519121_-	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|162aa|down_2|NZ_CP032508.1_3519182_3519668_-	NA	NA|125aa|down_3|NZ_CP032508.1_3519667_3520042_-	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]	NA|96aa|down_4|NZ_CP032508.1_3520173_3520461_-	TIGR02181, GRX_bact, Glutaredoxin, GrxC family	NA|864aa|down_5|NZ_CP032508.1_3520571_3523163_+	PRK14015, pepN, aminopeptidase N; Provisional	NA|252aa|down_6|NZ_CP032508.1_3523349_3524105_+	PRK08990, PRK08990, flagellar motor protein PomA; Reviewed	NA|324aa|down_7|NZ_CP032508.1_3524108_3525080_+	PRK08944, motB, flagellar motor protein MotB; Reviewed	NA|198aa|down_8|NZ_CP032508.1_3525199_3525793_+	pfam07238, PilZ, PilZ domain	NA|1124aa|down_9|NZ_CP032508.1_3525991_3529363_-	cd06331, PBP1_AmiC-like, type 1 periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF)
