assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009498395.1_ASM949839v1	NZ_CP045642	Lactobacillus helveticus strain LZ-R-5 chromosome, complete genome	1	372620-372755	1	CRISPRCasFinder	no	cas3	cas14j,cas3,csa3,cas2,cas6,cas8b2,cas7,cas5,cas4,cas1,DEDDh,DinG,cas14k,Cas14u_CAS-V	Unclear	TATCCCGTCTCATTAGGAATGAAA	24	0	0	NA	NA	NA	2	2	Unclear	cas14j,cas3,csa3,cas2,cas6,cas8b2,cas7,cas5,cas4,cas1,DEDDh,DinG,cas14k,Cas14u_CAS-V	NA|31aa|up_9|NZ_CP045642.1_365630_365723_-,NA|178aa|up_8|NZ_CP045642.1_366019_366553_+,NA|65aa|up_7|NZ_CP045642.1_367874_368069_+,NA|192aa|up_4|NZ_CP045642.1_370035_370611_-,NA|101aa|up_3|NZ_CP045642.1_370630_370933_-,NA|141aa|up_2|NZ_CP045642.1_370935_371358_-,NA|34aa|up_0|NZ_CP045642.1_372498_372600_-,NA	NA|31aa|up_9|NZ_CP045642.1_365630_365723_-	NA	NA|178aa|up_8|NZ_CP045642.1_366019_366553_+	NA	NA|65aa|up_7|NZ_CP045642.1_367874_368069_+	NA	NA|498aa|up_6|NZ_CP045642.1_368121_369615_-	pfam13730, HTH_36, Helix-turn-helix domain	NA|87aa|up_5|NZ_CP045642.1_369699_369960_-	pfam07471, Phage_Nu1, Phage DNA packaging protein Nu1	NA|192aa|up_4|NZ_CP045642.1_370035_370611_-	NA	NA|101aa|up_3|NZ_CP045642.1_370630_370933_-	NA	NA|141aa|up_2|NZ_CP045642.1_370935_371358_-	NA	NA|73aa|up_1|NZ_CP045642.1_371358_371577_-	cd00569, HTH_Hin_like, Helix-turn-helix domain of Hin and related proteins	NA|34aa|up_0|NZ_CP045642.1_372498_372600_-	NA	NA|384aa|down_0|NZ_CP045642.1_372870_374022_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|91aa|down_1|NZ_CP045642.1_374271_374544_+	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|541aa|down_2|NZ_CP045642.1_374598_376221_+	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|859aa|down_3|NZ_CP045642.1_376403_378980_+	PRK05399, PRK05399, DNA mismatch repair protein MutS; Provisional	NA|637aa|down_4|NZ_CP045642.1_378979_380890_+	PRK00095, mutL, DNA mismatch repair endonuclease MutL	NA|196aa|down_5|NZ_CP045642.1_380891_381479_+	PRK00116, ruvA, Holliday junction branch migration protein RuvA	NA|339aa|down_6|NZ_CP045642.1_381527_382544_+	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB	NA|145aa|down_7|NZ_CP045642.1_382593_383028_+	pfam02699, YajC, Preprotein translocase subunit	NA|484aa|down_8|NZ_CP045642.1_383162_384614_+	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|374aa|down_9|NZ_CP045642.1_384606_385728_+	cd03586, PolY_Pol_IV_kappa, DNA Polymerase IV/Kappa
GCF_009498395.1_ASM949839v1	NZ_CP045642	Lactobacillus helveticus strain LZ-R-5 chromosome, complete genome	2	545754-548447	1,2,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2	cas14j,cas3,csa3,cas2,cas6,cas8b2,cas7,cas5,cas4,cas1,DEDDh,DinG,cas14k,Cas14u_CAS-V	Unclear	GTTTTTATTTAACTTAAGAGAAATGTAAAG,GTTTTTATTTAACTTAAGAGAAATGTAAAG,GTTTTTATTTAACTTAAGAGAAATGTAAAG,GTTTTTATTTAACTTAAGAGAAATGTAAAG	30,30,30,30	3	3	545784-545820|546441-546476|547497-547532	NZ_CP045642.1_1366280-1366316|NZ_CP045642.1_2079230-2079265|NZ_CP045642.1_1262386-1262351	NA:NA:NA:NA	35,40,39,35	40	Unclear	cas14j,cas3,csa3,cas2,cas6,cas8b2,cas7,cas5,cas4,cas1,DEDDh,DinG,cas14k,Cas14u_CAS-V	NA,NA|177aa|down_7|NZ_CP045642.1_558505_559036_+	NA|294aa|up_9|NZ_CP045642.1_532894_533776_+	pfam01145, Band_7, SPFH domain / Band 7 family	NA|218aa|up_8|NZ_CP045642.1_533920_534574_+	PRK07116, PRK07116, flavodoxin; Provisional	cas6|252aa|up_7|NZ_CP045642.1_537052_537808_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b2|586aa|up_6|NZ_CP045642.1_537825_539583_+	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|301aa|up_5|NZ_CP045642.1_539601_540504_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|238aa|up_4|NZ_CP045642.1_540490_541204_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|810aa|up_3|NZ_CP045642.1_541346_543776_+	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas4|164aa|up_2|NZ_CP045642.1_543791_544283_+	pfam01930, Cas_Cas4, Domain of unknown function DUF83	cas1|330aa|up_1|NZ_CP045642.1_544292_545282_+	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	cas2|94aa|up_0|NZ_CP045642.1_545287_545569_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|888aa|down_0|NZ_CP045642.1_548601_551265_+	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|277aa|down_1|NZ_CP045642.1_551274_552105_+	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|201aa|down_2|NZ_CP045642.1_552101_552704_+	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|156aa|down_3|NZ_CP045642.1_552707_553175_+	PRK00464, nrdR, transcriptional repressor NrdR	NA|444aa|down_4|NZ_CP045642.1_553178_554510_+	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair]	NA|303aa|down_5|NZ_CP045642.1_554541_555450_+	PRK08939, PRK08939, primosomal protein DnaI; Reviewed	NA|645aa|down_6|NZ_CP045642.1_555741_557676_+	PRK00413, thrS, threonyl-tRNA synthetase; Reviewed	NA|177aa|down_7|NZ_CP045642.1_558505_559036_+	NA	NA|203aa|down_8|NZ_CP045642.1_559226_559835_+	cd03769, SR_IS607_transposase_like, Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain	NA|98aa|down_9|NZ_CP045642.1_562394_562688_+	COG3603, COG3603, Uncharacterized conserved protein [Function unknown]
GCF_009498395.1_ASM949839v1	NZ_CP045642	Lactobacillus helveticus strain LZ-R-5 chromosome, complete genome	3	1451135-1451239	3	CRISPRCasFinder	no	cas14j	cas14j,cas3,csa3,cas2,cas6,cas8b2,cas7,cas5,cas4,cas1,DEDDh,DinG,cas14k,Cas14u_CAS-V	Unclear	GTATTAATTACTAATAATAAGCAAGCCAGTTTAAAC	36	0	0	NA	NA	NA	1	1	TypeV	cas14j,cas3,csa3,cas2,cas6,cas8b2,cas7,cas5,cas4,cas1,DEDDh,DinG,cas14k,Cas14u_CAS-V	NA|73aa|up_2|NZ_CP045642.1_1450364_1450583_+,NA|76aa|up_1|NZ_CP045642.1_1450586_1450814_+,NA	NA|334aa|up_9|NZ_CP045642.1_1442787_1443789_-	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]	NA|286aa|up_8|NZ_CP045642.1_1443798_1444656_+	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional	NA|200aa|up_7|NZ_CP045642.1_1445736_1446336_-	PRK04296, PRK04296, thymidine kinase; Provisional	NA|451aa|up_6|NZ_CP045642.1_1446485_1447838_+	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|386aa|up_5|NZ_CP045642.1_1448015_1449173_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|234aa|up_4|NZ_CP045642.1_1449315_1450017_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|69aa|up_3|NZ_CP045642.1_1450165_1450372_+	pfam12728, HTH_17, Helix-turn-helix domain	NA|73aa|up_2|NZ_CP045642.1_1450364_1450583_+	NA	NA|76aa|up_1|NZ_CP045642.1_1450586_1450814_+	NA	NA|92aa|up_0|NZ_CP045642.1_1450816_1451092_+	pfam07471, Phage_Nu1, Phage DNA packaging protein Nu1	NA|532aa|down_0|NZ_CP045642.1_1452259_1453855_+	COG3378, COG3378, Phage associated DNA primase [General function prediction only]	NA|338aa|down_1|NZ_CP045642.1_1456309_1457323_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|410aa|down_2|NZ_CP045642.1_1457592_1458822_-	pfam01548, DEDD_Tnp_IS110, Transposase	NA|447aa|down_3|NZ_CP045642.1_1462000_1463341_-	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|205aa|down_4|NZ_CP045642.1_1463416_1464031_-	pfam04892, VanZ, VanZ like family	NA|724aa|down_5|NZ_CP045642.1_1464155_1466327_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	cas14j|397aa|down_6|NZ_CP045642.1_1466542_1467733_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|486aa|down_7|NZ_CP045642.1_1467825_1469283_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|250aa|down_8|NZ_CP045642.1_1469286_1470036_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|130aa|down_9|NZ_CP045642.1_1470008_1470398_-	pfam13630, SdpI, SdpI/YfhL protein family
GCF_009498395.1_ASM949839v1	NZ_CP045642	Lactobacillus helveticus strain LZ-R-5 chromosome, complete genome	4	1661330-1661509	3	PILER-CR	no	cas14k	cas14j,cas3,csa3,cas2,cas6,cas8b2,cas7,cas5,cas4,cas1,DEDDh,DinG,cas14k,Cas14u_CAS-V	Unclear	ATGTGGGATTTGAACCCACGC	21	0	0	NA	NA	NA	2	2	TypeV	cas14j,cas3,csa3,cas2,cas6,cas8b2,cas7,cas5,cas4,cas1,DEDDh,DinG,cas14k,Cas14u_CAS-V	NA|224aa|up_7|NZ_CP045642.1_1647556_1648228_-,NA|149aa|down_3|NZ_CP045642.1_1665808_1666255_-	NA|160aa|up_9|NZ_CP045642.1_1645393_1645873_-	pfam12802, MarR_2, MarR family	NA|273aa|up_8|NZ_CP045642.1_1646015_1646834_+	cd13689, PBP2_BsGlnH, Substrate binding domain of ABC glutamine transporter from Bacillus subtilis; the type 2 periplasmic-bindig protein fold	NA|224aa|up_7|NZ_CP045642.1_1647556_1648228_-	NA	NA|556aa|up_6|NZ_CP045642.1_1648508_1650176_+	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional	NA|363aa|up_5|NZ_CP045642.1_1650248_1651337_+	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|402aa|up_4|NZ_CP045642.1_1651442_1652648_+	cd17391, MFS_MdtG_MDR_like, Multidrug resistance protein MdtG and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|579aa|up_3|NZ_CP045642.1_1652793_1654530_+	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|490aa|up_2|NZ_CP045642.1_1654483_1655953_-	cd17502, MFS_Azr1_MDR_like, Saccharomyces cerevisiae Azole resistance protein 1 (Azr1p), and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|177aa|up_1|NZ_CP045642.1_1656243_1656774_+	PRK05205, PRK05205, bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA|443aa|up_0|NZ_CP045642.1_1656787_1658116_+	PRK10720, PRK10720, uracil transporter; Provisional	cas14k|439aa|down_0|NZ_CP045642.1_1661909_1663226_-	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|203aa|down_1|NZ_CP045642.1_1663255_1663864_-	cd03769, SR_IS607_transposase_like, Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain	NA|167aa|down_2|NZ_CP045642.1_1663966_1664467_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|149aa|down_3|NZ_CP045642.1_1665808_1666255_-	NA	NA|68aa|down_4|NZ_CP045642.1_1666613_1666817_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|264aa|down_5|NZ_CP045642.1_1668865_1669657_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|393aa|down_6|NZ_CP045642.1_1669677_1670856_+	PRK08068, PRK08068, transaminase; Reviewed	NA|321aa|down_7|NZ_CP045642.1_1670874_1671837_+	PRK06522, PRK06522, 2-dehydropantoate 2-reductase; Reviewed	NA|468aa|down_8|NZ_CP045642.1_1673278_1674682_+	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|459aa|down_9|NZ_CP045642.1_1674993_1676370_+	TIGR00931, Uncharacterized_Na+/H+_antiporter_HI_1107, Na+/H+ antiporter NhaC
