assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009618035.1_ASM961803v1	NZ_AP021867	Stenotrophomonas maltophilia strain KMM 349	1	760740-760820	1	CRISPRCasFinder	no		cas3,WYL,DEDDh,csa3,DinG,PD-DExK	Orphan	CTTGTAGAGTCGAGCCATGCTCGACT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,csa3,DinG,PD-DExK	NA,NA|144aa|down_5|NZ_AP021867.1_767319_767751_-	NA|158aa|up_9|NZ_AP021867.1_745661_746135_-	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins	NA|394aa|up_8|NZ_AP021867.1_746211_747393_-	pfam18731, HEPN_Swt1, Swt1-like HEPN	NA|482aa|up_7|NZ_AP021867.1_747549_748995_-	pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hydrolase	NA|839aa|up_6|NZ_AP021867.1_749235_751752_+	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|904aa|up_5|NZ_AP021867.1_751924_754636_+	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed	NA|169aa|up_4|NZ_AP021867.1_754752_755259_-	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism]	NA|399aa|up_3|NZ_AP021867.1_755319_756516_-	PRK13668, PRK13668, hypothetical protein; Provisional	NA|404aa|up_2|NZ_AP021867.1_756675_757887_-	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated	NA|572aa|up_1|NZ_AP021867.1_758220_759936_+	cd07986, LPLAT_ACT14924-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924	NA|267aa|up_0|NZ_AP021867.1_759932_760733_+	cd07398, MPP_YbbF-LpxH, Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain	NA|352aa|down_0|NZ_AP021867.1_760948_762004_+	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase	NA|333aa|down_1|NZ_AP021867.1_762062_763061_-	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|631aa|down_2|NZ_AP021867.1_763069_764962_-	pfam10131, PTPS_related, 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein	NA|276aa|down_3|NZ_AP021867.1_765223_766051_-	PRK08317, PRK08317, hypothetical protein; Provisional	NA|332aa|down_4|NZ_AP021867.1_766165_767161_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|144aa|down_5|NZ_AP021867.1_767319_767751_-	NA	NA|306aa|down_6|NZ_AP021867.1_767832_768750_-	cd08475, PBP2_CrgA_like_6, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|396aa|down_7|NZ_AP021867.1_768845_770033_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|322aa|down_8|NZ_AP021867.1_770086_771052_-	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP	NA|433aa|down_9|NZ_AP021867.1_771077_772376_-	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]
GCF_009618035.1_ASM961803v1	NZ_AP021867	Stenotrophomonas maltophilia strain KMM 349	2	773574-773660	2	CRISPRCasFinder	no		cas3,WYL,DEDDh,csa3,DinG,PD-DExK	Orphan	GCTCGACTCCGCGCGCAGCGCGGGTTTC	28	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,csa3,DinG,PD-DExK	NA|144aa|up_5|NZ_AP021867.1_767319_767751_-,NA|309aa|down_3|NZ_AP021867.1_777121_778048_+,NA|177aa|down_4|NZ_AP021867.1_778301_778832_+,NA|95aa|down_5|NZ_AP021867.1_778831_779116_+,NA|188aa|down_6|NZ_AP021867.1_779341_779905_-	NA|333aa|up_9|NZ_AP021867.1_762062_763061_-	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily	NA|631aa|up_8|NZ_AP021867.1_763069_764962_-	pfam10131, PTPS_related, 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein	NA|276aa|up_7|NZ_AP021867.1_765223_766051_-	PRK08317, PRK08317, hypothetical protein; Provisional	NA|332aa|up_6|NZ_AP021867.1_766165_767161_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|144aa|up_5|NZ_AP021867.1_767319_767751_-	NA	NA|306aa|up_4|NZ_AP021867.1_767832_768750_-	cd08475, PBP2_CrgA_like_6, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|396aa|up_3|NZ_AP021867.1_768845_770033_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|322aa|up_2|NZ_AP021867.1_770086_771052_-	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP	NA|433aa|up_1|NZ_AP021867.1_771077_772376_-	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|324aa|up_0|NZ_AP021867.1_772570_773542_+	cd19143, AKR_AKR6C1_2, AKR6C family of aldo-keto reductase (AKR)	NA|65aa|down_0|NZ_AP021867.1_773853_774048_+	pfam10636, hemP, Hemin uptake protein hemP	NA|736aa|down_1|NZ_AP021867.1_774237_776445_+	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein	NA|200aa|down_2|NZ_AP021867.1_776449_777049_+	COG3720, HemS, Putative heme degradation protein [Inorganic ion transport and metabolism]	NA|309aa|down_3|NZ_AP021867.1_777121_778048_+	NA	NA|177aa|down_4|NZ_AP021867.1_778301_778832_+	NA	NA|95aa|down_5|NZ_AP021867.1_778831_779116_+	NA	NA|188aa|down_6|NZ_AP021867.1_779341_779905_-	NA	NA|839aa|down_7|NZ_AP021867.1_779935_782452_-	COG3127, COG3127, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|216aa|down_8|NZ_AP021867.1_782448_783096_-	COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|215aa|down_9|NZ_AP021867.1_783171_783816_+	cd01822, Lysophospholipase_L1_like, Lysophospholipase L1-like subgroup of SGNH-hydrolases
GCF_009618035.1_ASM961803v1	NZ_AP021867	Stenotrophomonas maltophilia strain KMM 349	3	1079612-1079743	1,3	PILER-CR,CRISPRCasFinder	no		cas3,WYL,DEDDh,csa3,DinG,PD-DExK	Orphan	GGTGGGTGCCGACCGTTGGTCGGCAC,GGTGGGTGCCGACCGTTGGTCGGCAC	26,26	0	0	NA	NA	NA:NA	2,2	2	Orphan	cas3,WYL,DEDDh,csa3,DinG,PD-DExK	NA,NA|89aa|down_2|NZ_AP021867.1_1081337_1081604_-	NA|328aa|up_9|NZ_AP021867.1_1071504_1072488_+	cd19078, AKR_AKR13C1_2, AKR13C family of aldo-keto reductase (AKR)	NA|300aa|up_8|NZ_AP021867.1_1072543_1073443_-	cd08474, PBP2_CrgA_like_5, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|70aa|up_7|NZ_AP021867.1_1073536_1073746_+	pfam14117, DUF4287, Domain of unknown function (DUF4287)	NA|150aa|up_6|NZ_AP021867.1_1073842_1074292_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|236aa|up_5|NZ_AP021867.1_1074385_1075093_+	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|181aa|up_4|NZ_AP021867.1_1075166_1075709_-	COG2818, Tag, 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]	NA|596aa|up_3|NZ_AP021867.1_1075705_1077493_-	pfam13687, DUF4153, Domain of unknown function (DUF4153)	NA|189aa|up_2|NZ_AP021867.1_1077584_1078151_+	PRK00228, PRK00228, YqgE/AlgH family protein	NA|156aa|up_1|NZ_AP021867.1_1078170_1078638_+	PRK00109, PRK00109, Holliday junction resolvase RuvX	NA|317aa|up_0|NZ_AP021867.1_1078653_1079604_+	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit	NA|164aa|down_0|NZ_AP021867.1_1079857_1080349_+	pfam01797, Y1_Tnp, Transposase IS200 like	NA|266aa|down_1|NZ_AP021867.1_1080469_1081267_-	COG4099, COG4099, Predicted peptidase [General function prediction only]	NA|89aa|down_2|NZ_AP021867.1_1081337_1081604_-	NA	NA|454aa|down_3|NZ_AP021867.1_1081665_1083027_-	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]	NA|590aa|down_4|NZ_AP021867.1_1083207_1084977_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|90aa|down_5|NZ_AP021867.1_1084979_1085249_-	TIGR01003, Phosphocarrier_protein_HPr, Phosphotransferase System HPr (HPr) Family	NA|131aa|down_6|NZ_AP021867.1_1085241_1085634_-	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|295aa|down_7|NZ_AP021867.1_1085937_1086822_-	PRK05416, PRK05416, RNase adapter RapZ	NA|317aa|down_8|NZ_AP021867.1_1086851_1087802_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|151aa|down_9|NZ_AP021867.1_1087798_1088251_-	pfam00359, PTS_EIIA_2, Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2
GCF_009618035.1_ASM961803v1	NZ_AP021867	Stenotrophomonas maltophilia strain KMM 349	4	1382120-1382211	4	CRISPRCasFinder	no		cas3,WYL,DEDDh,csa3,DinG,PD-DExK	Orphan	TTGCCGGCCAGCGGCTGGCACTACCGA	27	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,csa3,DinG,PD-DExK	NA|223aa|up_3|NZ_AP021867.1_1379942_1380611_+,NA|295aa|down_0|NZ_AP021867.1_1382248_1383133_-,NA|120aa|down_6|NZ_AP021867.1_1388194_1388554_-	NA|376aa|up_9|NZ_AP021867.1_1373364_1374492_-	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|396aa|up_8|NZ_AP021867.1_1374488_1375676_-	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|338aa|up_7|NZ_AP021867.1_1375660_1376674_-	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|467aa|up_6|NZ_AP021867.1_1376666_1378067_-	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|298aa|up_5|NZ_AP021867.1_1378145_1379039_-	PRK03635, PRK03635, ArgP/LysG family DNA-binding transcriptional regulator	NA|207aa|up_4|NZ_AP021867.1_1379146_1379767_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|223aa|up_3|NZ_AP021867.1_1379942_1380611_+	NA	NA|261aa|up_2|NZ_AP021867.1_1380607_1381390_-	cd01086, MetAP1, Methionine Aminopeptidase 1	NA|71aa|up_1|NZ_AP021867.1_1381400_1381613_-	pfam11903, ParD_like, ParD-like antitoxin of type II bacterial toxin-antitoxin system	NA|120aa|up_0|NZ_AP021867.1_1381681_1382041_-	cd08349, BLMA_like, Bleomycin binding protein (BLMA) and similar proteins	NA|295aa|down_0|NZ_AP021867.1_1382248_1383133_-	NA	NA|355aa|down_1|NZ_AP021867.1_1383136_1384201_-	COG3146, COG3146, Uncharacterized protein conserved in bacteria [Function unknown]	NA|467aa|down_2|NZ_AP021867.1_1384230_1385631_-	COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]	NA|239aa|down_3|NZ_AP021867.1_1385695_1386412_-	cd07524, HAD_Pase, phosphatase, similar to Bacillus subtilis MtnX; belongs to the haloacid dehalogenase-like superfamily	NA|401aa|down_4|NZ_AP021867.1_1386586_1387789_-	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)	NA|133aa|down_5|NZ_AP021867.1_1387799_1388198_-	pfam00892, EamA, EamA-like transporter family	NA|120aa|down_6|NZ_AP021867.1_1388194_1388554_-	NA	NA|279aa|down_7|NZ_AP021867.1_1388555_1389392_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|460aa|down_8|NZ_AP021867.1_1389472_1390852_-	PRK10337, PRK10337, sensor protein QseC; Provisional	NA|228aa|down_9|NZ_AP021867.1_1390848_1391532_-	PRK10643, PRK10643, two-component system response regulator PmrA
GCF_009618035.1_ASM961803v1	NZ_AP021867	Stenotrophomonas maltophilia strain KMM 349	5	1398711-1398783	5	CRISPRCasFinder	no		cas3,WYL,DEDDh,csa3,DinG,PD-DExK	Orphan	CCGGGTAGCGCCGGGCCATGCCCG	24	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,csa3,DinG,PD-DExK	NA|120aa|up_8|NZ_AP021867.1_1388194_1388554_-,NA	NA|133aa|up_9|NZ_AP021867.1_1387799_1388198_-	pfam00892, EamA, EamA-like transporter family	NA|120aa|up_8|NZ_AP021867.1_1388194_1388554_-	NA	NA|279aa|up_7|NZ_AP021867.1_1388555_1389392_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|460aa|up_6|NZ_AP021867.1_1389472_1390852_-	PRK10337, PRK10337, sensor protein QseC; Provisional	NA|228aa|up_5|NZ_AP021867.1_1390848_1391532_-	PRK10643, PRK10643, two-component system response regulator PmrA	NA|376aa|up_4|NZ_AP021867.1_1391664_1392792_-	cd07425, MPP_Shelphs, Shewanella-like phosphatases, metallophosphatase domain	NA|150aa|up_3|NZ_AP021867.1_1392865_1393315_-	COG1733, COG1733, Predicted transcriptional regulators [Transcription]	NA|406aa|up_2|NZ_AP021867.1_1393392_1394610_+	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|472aa|up_1|NZ_AP021867.1_1394705_1396121_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|750aa|up_0|NZ_AP021867.1_1396410_1398660_+	PRK13524, PRK13524, FepA family TonB-dependent siderophore receptor	NA|327aa|down_0|NZ_AP021867.1_1398879_1399860_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|228aa|down_1|NZ_AP021867.1_1399984_1400668_-	PRK11617, PRK11617, deoxyribonuclease V	NA|250aa|down_2|NZ_AP021867.1_1400762_1401512_+	PRK14115, gpmA, 2,3-diphosphoglycerate-dependent phosphoglycerate mutase	NA|698aa|down_3|NZ_AP021867.1_1401672_1403766_+	cd08662, M13, Peptidase family M13 includes neprilysin and endothelin-converting enzyme I	NA|206aa|down_4|NZ_AP021867.1_1403858_1404476_-	COG2206, COG2206, c-di-GMP phosphodiesterase class II (HD-GYP domain) [Signal transduction mechanisms]	NA|1155aa|down_5|NZ_AP021867.1_1404522_1407987_-	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	NA|182aa|down_6|NZ_AP021867.1_1408136_1408682_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|286aa|down_7|NZ_AP021867.1_1408777_1409635_-	COG2961, ComJ, Protein involved in catabolism of external DNA [General function prediction only]	NA|243aa|down_8|NZ_AP021867.1_1409670_1410399_+	PRK11083, PRK11083, DNA-binding response regulator CreB; Provisional	NA|487aa|down_9|NZ_AP021867.1_1410402_1411863_+	PRK11100, PRK11100, sensory histidine kinase CreC; Provisional
GCF_009618035.1_ASM961803v1	NZ_AP021867	Stenotrophomonas maltophilia strain KMM 349	6	1845958-1846050	6	CRISPRCasFinder	no		cas3,WYL,DEDDh,csa3,DinG,PD-DExK	Orphan	TCGACCAAGGTCGACACCTACCA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,csa3,DinG,PD-DExK	NA,NA|65aa|down_0|NZ_AP021867.1_1846099_1846294_-	NA|306aa|up_9|NZ_AP021867.1_1833036_1833954_+	cd08480, PBP2_CrgA_like_10, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|554aa|up_8|NZ_AP021867.1_1834078_1835740_-	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|355aa|up_7|NZ_AP021867.1_1835854_1836919_+	PRK00082, hrcA, heat-inducible transcription repressor; Provisional	NA|172aa|up_6|NZ_AP021867.1_1836982_1837498_+	PRK14147, PRK14147, heat shock protein GrpE; Provisional	NA|642aa|up_5|NZ_AP021867.1_1837678_1839604_+	PRK00290, dnaK, molecular chaperone DnaK; Provisional	NA|377aa|up_4|NZ_AP021867.1_1839758_1840889_+	PRK10767, PRK10767, chaperone protein DnaJ; Provisional	NA|266aa|up_3|NZ_AP021867.1_1840981_1841779_-	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain	NA|400aa|up_2|NZ_AP021867.1_1841851_1843051_+	cd17478, MFS_FsR, Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters	NA|303aa|up_1|NZ_AP021867.1_1843769_1844678_+	cd01173, pyridoxal_pyridoxamine_kinase, Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate  (PLP), by catalyzing the phosphorylation of the precursor vitamin B6  in the presence of Zn2+ and ATP	NA|375aa|up_0|NZ_AP021867.1_1844674_1845799_+	PRK08818, PRK08818, prephenate dehydrogenase; Provisional	NA|65aa|down_0|NZ_AP021867.1_1846099_1846294_-	NA	NA|591aa|down_1|NZ_AP021867.1_1846364_1848137_-	TIGR02204, system_ATPase_and_permease_component, ABC transporter, permease/ATP-binding protein	NA|199aa|down_2|NZ_AP021867.1_1848129_1848726_-	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]	NA|329aa|down_3|NZ_AP021867.1_1848766_1849753_-	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated	NA|208aa|down_4|NZ_AP021867.1_1849749_1850373_-	PRK12513, PRK12513, RNA polymerase sigma factor; Provisional	NA|947aa|down_5|NZ_AP021867.1_1850515_1853356_+	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|198aa|down_6|NZ_AP021867.1_1853375_1853969_-	TIGR00730, LOG_family_protein_YJL055W, TIGR00730 family protein	NA|499aa|down_7|NZ_AP021867.1_1854187_1855684_-	cd00610, OAT_like, Acetyl ornithine aminotransferase family	NA|356aa|down_8|NZ_AP021867.1_1855894_1856962_+	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|377aa|down_9|NZ_AP021867.1_1857088_1858219_+	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional
GCF_009618035.1_ASM961803v1	NZ_AP021867	Stenotrophomonas maltophilia strain KMM 349	7	2212721-2212840	7	CRISPRCasFinder	no		cas3,WYL,DEDDh,csa3,DinG,PD-DExK	Orphan	GCTCGCGATCATCCACGCACAGCGTGGATCTACTG	35	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,csa3,DinG,PD-DExK	NA|113aa|up_4|NZ_AP021867.1_2204117_2204456_+,NA|155aa|down_0|NZ_AP021867.1_2213526_2213991_-,NA|116aa|down_1|NZ_AP021867.1_2214109_2214457_-,NA|71aa|down_2|NZ_AP021867.1_2214554_2214767_-,NA|158aa|down_7|NZ_AP021867.1_2218491_2218965_-	NA|136aa|up_9|NZ_AP021867.1_2200971_2201379_-	PRK12629, flgC, flagellar basal body rod protein FlgC; Provisional	NA|132aa|up_8|NZ_AP021867.1_2201382_2201778_-	PRK12620, flgB, flagellar basal body rod protein FlgB; Provisional	NA|315aa|up_7|NZ_AP021867.1_2201927_2202872_-	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms]	NA|219aa|up_6|NZ_AP021867.1_2203083_2203740_+	PRK12617, flgA, flagellar basal body P-ring formation protein FlgA	NA|102aa|up_5|NZ_AP021867.1_2203815_2204121_+	TIGR03824, FlgM_jcvi, flagellar biosynthesis anti-sigma factor FlgM	NA|113aa|up_4|NZ_AP021867.1_2204117_2204456_+	NA	NA|407aa|up_3|NZ_AP021867.1_2204547_2205768_+	cd16943, HATPase_AtoS-like, Histidine kinase-like ATPase domain of two-component sensor histidine kinases similar to Escherichia coli K-12 AtoS	NA|591aa|up_2|NZ_AP021867.1_2205861_2207634_-	cd01948, EAL, EAL domain	NA|701aa|up_1|NZ_AP021867.1_2207638_2209741_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|920aa|up_0|NZ_AP021867.1_2209872_2212632_+	PRK10060, PRK10060, cyclic di-GMP phosphodiesterase	NA|155aa|down_0|NZ_AP021867.1_2213526_2213991_-	NA	NA|116aa|down_1|NZ_AP021867.1_2214109_2214457_-	NA	NA|71aa|down_2|NZ_AP021867.1_2214554_2214767_-	NA	NA|397aa|down_3|NZ_AP021867.1_2214865_2216056_-	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain	NA|205aa|down_4|NZ_AP021867.1_2216278_2216893_-	PRK00218, PRK00218, lysogenization regulator HflD	NA|381aa|down_5|NZ_AP021867.1_2216889_2218032_-	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed	NA|154aa|down_6|NZ_AP021867.1_2218028_2218490_-	cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function	NA|158aa|down_7|NZ_AP021867.1_2218491_2218965_-	NA	NA|109aa|down_8|NZ_AP021867.1_2219077_2219404_+	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|271aa|down_9|NZ_AP021867.1_2219484_2220297_-	COG3570, StrB, Streptomycin 6-kinase [Defense mechanisms]
GCF_009618035.1_ASM961803v1	NZ_AP021867	Stenotrophomonas maltophilia strain KMM 349	8	2425797-2425915	8	CRISPRCasFinder	no		cas3,WYL,DEDDh,csa3,DinG,PD-DExK	Orphan	CCGGTGAAAGCGGCGCCAACCAAGGTTGGCGACTACC	37	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,csa3,DinG,PD-DExK	NA|204aa|up_9|NZ_AP021867.1_2415692_2416304_+,NA|100aa|up_2|NZ_AP021867.1_2423595_2423895_+,NA|119aa|down_3|NZ_AP021867.1_2430300_2430657_-,NA|413aa|down_6|NZ_AP021867.1_2432901_2434140_-,NA|165aa|down_8|NZ_AP021867.1_2436736_2437231_-	NA|204aa|up_9|NZ_AP021867.1_2415692_2416304_+	NA	NA|239aa|up_8|NZ_AP021867.1_2416363_2417080_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|359aa|up_7|NZ_AP021867.1_2417083_2418160_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|309aa|up_6|NZ_AP021867.1_2418360_2419287_+	pfam13748, ABC_membrane_3, ABC transporter transmembrane region	NA|205aa|up_5|NZ_AP021867.1_2419547_2420162_-	PRK13756, PRK13756, TetR family transcriptional regulator	NA|279aa|up_4|NZ_AP021867.1_2420332_2421169_+	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family	NA|726aa|up_3|NZ_AP021867.1_2421365_2423543_+	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor	NA|100aa|up_2|NZ_AP021867.1_2423595_2423895_+	NA	NA|537aa|up_1|NZ_AP021867.1_2423891_2425502_+	pfam03929, PepSY_TM, PepSY-associated TM region	NA|93aa|up_0|NZ_AP021867.1_2425498_2425777_+	pfam11804, DUF3325, Protein of unknown function (DUF3325)	NA|363aa|down_0|NZ_AP021867.1_2425947_2427036_-	COG3214, COG3214, Uncharacterized protein conserved in bacteria [Function unknown]	NA|198aa|down_1|NZ_AP021867.1_2427105_2427699_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|732aa|down_2|NZ_AP021867.1_2427938_2430134_+	TIGR01783, Ferrienterobactin_receptor, TonB-dependent siderophore receptor	NA|119aa|down_3|NZ_AP021867.1_2430300_2430657_-	NA	NA|222aa|down_4|NZ_AP021867.1_2431120_2431786_-	PRK13882, PRK13882, conjugal transfer protein TrbP; Provisional	NA|316aa|down_5|NZ_AP021867.1_2431900_2432848_+	TIGR01249, Putative_proline_iminopeptidase, proline iminopeptidase, Neisseria-type subfamily	NA|413aa|down_6|NZ_AP021867.1_2432901_2434140_-	NA	NA|849aa|down_7|NZ_AP021867.1_2434121_2436668_-	pfam16967, TcfC, E-set like domain	NA|165aa|down_8|NZ_AP021867.1_2436736_2437231_-	NA	NA|245aa|down_9|NZ_AP021867.1_2437341_2438076_-	PRK15308, PRK15308, fimbrial protein TcfA
GCF_009618035.1_ASM961803v1	NZ_AP021867	Stenotrophomonas maltophilia strain KMM 349	9	2442830-2442926	9	CRISPRCasFinder	no		cas3,WYL,DEDDh,csa3,DinG,PD-DExK	Orphan	GTAGCGCCGGCCGCTGGCCGGCAAC	25	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,csa3,DinG,PD-DExK	NA|119aa|up_9|NZ_AP021867.1_2430300_2430657_-,NA|413aa|up_6|NZ_AP021867.1_2432901_2434140_-,NA|165aa|up_4|NZ_AP021867.1_2436736_2437231_-,NA|100aa|up_1|NZ_AP021867.1_2438942_2439242_+,NA|89aa|down_4|NZ_AP021867.1_2446570_2446837_-	NA|119aa|up_9|NZ_AP021867.1_2430300_2430657_-	NA	NA|222aa|up_8|NZ_AP021867.1_2431120_2431786_-	PRK13882, PRK13882, conjugal transfer protein TrbP; Provisional	NA|316aa|up_7|NZ_AP021867.1_2431900_2432848_+	TIGR01249, Putative_proline_iminopeptidase, proline iminopeptidase, Neisseria-type subfamily	NA|413aa|up_6|NZ_AP021867.1_2432901_2434140_-	NA	NA|849aa|up_5|NZ_AP021867.1_2434121_2436668_-	pfam16967, TcfC, E-set like domain	NA|165aa|up_4|NZ_AP021867.1_2436736_2437231_-	NA	NA|245aa|up_3|NZ_AP021867.1_2437341_2438076_-	PRK15308, PRK15308, fimbrial protein TcfA	NA|100aa|up_2|NZ_AP021867.1_2438349_2438649_+	cd03002, PDI_a_MPD1_like, PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein	NA|100aa|up_1|NZ_AP021867.1_2438942_2439242_+	NA	NA|920aa|up_0|NZ_AP021867.1_2439304_2442064_+	PRK10517, PRK10517, magnesium-transporting P-type ATPase MgtA	NA|352aa|down_0|NZ_AP021867.1_2443057_2444113_+	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]	NA|214aa|down_1|NZ_AP021867.1_2444105_2444747_+	COG4566, TtrR, Response regulator [Signal transduction mechanisms]	NA|182aa|down_2|NZ_AP021867.1_2444743_2445289_+	pfam08002, DUF1697, Protein of unknown function (DUF1697)	NA|391aa|down_3|NZ_AP021867.1_2445388_2446561_-	pfam06772, LtrA, Bacterial low temperature requirement A protein (LtrA)	NA|89aa|down_4|NZ_AP021867.1_2446570_2446837_-	NA	NA|175aa|down_5|NZ_AP021867.1_2447040_2447565_+	COG1595, RpoE, DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [Transcription]	NA|284aa|down_6|NZ_AP021867.1_2447561_2448413_+	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms]	NA|810aa|down_7|NZ_AP021867.1_2448484_2450914_+	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|291aa|down_8|NZ_AP021867.1_2451009_2451882_+	cd16289, L1_POM-1-like_MBL-B3, Stenotrophomonas maltophilia L1, Pseudomonas otitidis POM-1 and related metallo-beta-lactamases, subclass B3; MBL-fold metallo-hydrolase domain	NA|180aa|down_9|NZ_AP021867.1_2452022_2452562_-	COG3019, COG3019, Predicted metal-binding protein [General function prediction only]
GCF_009618035.1_ASM961803v1	NZ_AP021867	Stenotrophomonas maltophilia strain KMM 349	10	2837142-2837241	10	CRISPRCasFinder	no		cas3,WYL,DEDDh,csa3,DinG,PD-DExK	Orphan	TGCCGACCAAGGTCGGCACCTACC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,csa3,DinG,PD-DExK	NA,NA	NA|1869aa|up_9|NZ_AP021867.1_2823512_2829119_-	pfam18741, MTES_1575, REase_MTES_1575	NA|257aa|up_8|NZ_AP021867.1_2829255_2830026_+	pfam14355, Abi_C, Abortive infection C-terminus	NA|184aa|up_7|NZ_AP021867.1_2829983_2830535_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|357aa|up_6|NZ_AP021867.1_2830813_2831884_+	pfam14025, DUF4241, Protein of unknown function (DUF4241)	NA|331aa|up_5|NZ_AP021867.1_2831965_2832958_-	cd08473, PBP2_CrgA_like_4, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold	NA|196aa|up_4|NZ_AP021867.1_2833080_2833668_+	PRK00170, PRK00170, azoreductase; Reviewed	NA|117aa|up_3|NZ_AP021867.1_2833893_2834244_+	cd11844, SH3_CAS, Src homology 3 domain of CAS (Crk-Associated Substrate) scaffolding proteins	NA|427aa|up_2|NZ_AP021867.1_2834349_2835630_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|213aa|up_1|NZ_AP021867.1_2835743_2836382_+	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal	NA|191aa|up_0|NZ_AP021867.1_2836501_2837074_+	pfam03544, TonB_C, Gram-negative bacterial TonB protein C-terminal	NA|436aa|down_0|NZ_AP021867.1_2837367_2838675_-	PRK14806, PRK14806, bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional	NA|400aa|down_1|NZ_AP021867.1_2838751_2839951_-	COG0077, PheA, Prephenate dehydratase [Amino acid transport and metabolism]	NA|362aa|down_2|NZ_AP021867.1_2840002_2841088_-	PRK05355, PRK05355, 3-phosphoserine/phosphohydroxythreonine transaminase	NA|269aa|down_3|NZ_AP021867.1_2841282_2842089_-	COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms]	NA|92aa|down_4|NZ_AP021867.1_2842214_2842490_+	pfam09650, PHA_gran_rgn, Putative polyhydroxyalkanoic acid system protein (PHA_gran_rgn)	NA|164aa|down_5|NZ_AP021867.1_2842570_2843062_+	pfam05597, Phasin, Poly(hydroxyalcanoate) granule associated protein (phasin)	NA|337aa|down_6|NZ_AP021867.1_2843298_2844309_+	pfam04471, Mrr_cat, Restriction endonuclease	NA|243aa|down_7|NZ_AP021867.1_2844466_2845195_-	TIGR02018, Histidine_utilization_repressor, histidine utilization repressor, proteobacterial	NA|457aa|down_8|NZ_AP021867.1_2845223_2846594_-	PRK09229, PRK09229, N-formimino-L-glutamate deiminase; Validated	NA|408aa|down_9|NZ_AP021867.1_2846661_2847885_+	PRK09356, PRK09356, imidazolonepropionase; Validated
GCF_009618035.1_ASM961803v1	NZ_AP021867	Stenotrophomonas maltophilia strain KMM 349	11	3638526-3638671	11	CRISPRCasFinder	no		cas3,WYL,DEDDh,csa3,DinG,PD-DExK	Orphan	GCCAACCTTGGTTGGCGCCCCGTGCCGACCAAGGTCGGCACCTACC	46	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,csa3,DinG,PD-DExK	NA,NA|215aa|down_0|NZ_AP021867.1_3638815_3639460_+,NA|250aa|down_1|NZ_AP021867.1_3639741_3640491_-	NA|335aa|up_9|NZ_AP021867.1_3627117_3628122_-	cd01467, vWA_BatA_type, VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|150aa|up_8|NZ_AP021867.1_3628118_3628568_-	pfam14316, DUF4381, Domain of unknown function (DUF4381)	NA|310aa|up_7|NZ_AP021867.1_3628564_3629494_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|342aa|up_6|NZ_AP021867.1_3629502_3630528_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|658aa|up_5|NZ_AP021867.1_3630718_3632692_-	TIGR02515, Putative_DNA_transport_protein_HofQ, type IV pilus secretin (or competence protein) PilQ	NA|168aa|up_4|NZ_AP021867.1_3632713_3633217_-	pfam04351, PilP, Pilus assembly protein, PilP	NA|219aa|up_3|NZ_AP021867.1_3633243_3633900_-	COG3167, PilO, Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]	NA|291aa|up_2|NZ_AP021867.1_3633896_3634769_-	COG3166, PilN, Tfp pilus assembly protein PilN [Cell motility and secretion / Intracellular trafficking and secretion]	NA|361aa|up_1|NZ_AP021867.1_3634768_3635851_-	pfam11104, PilM_2, Type IV pilus assembly protein PilM;	NA|808aa|up_0|NZ_AP021867.1_3636046_3638470_+	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]	NA|215aa|down_0|NZ_AP021867.1_3638815_3639460_+	NA	NA|250aa|down_1|NZ_AP021867.1_3639741_3640491_-	NA	NA|1815aa|down_2|NZ_AP021867.1_3640560_3646005_-	cd12820, LbR_YadA-like, YadA-like, left-handed beta-roll	NA|236aa|down_3|NZ_AP021867.1_3646066_3646774_-	PRK15308, PRK15308, fimbrial protein TcfA	NA|384aa|down_4|NZ_AP021867.1_3646792_3647944_-	pfam07434, CblD, CblD like pilus biogenesis initiator	NA|911aa|down_5|NZ_AP021867.1_3647940_3650673_-	PRK15310, PRK15310, fimbrial outer membrane usher protein TcfC; Provisional	NA|167aa|down_6|NZ_AP021867.1_3650734_3651235_-	pfam04449, Fimbrial_CS1, CS1 type fimbrial major subunit	NA|253aa|down_7|NZ_AP021867.1_3651831_3652590_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|258aa|down_8|NZ_AP021867.1_3652683_3653457_+	cd06124, cupin_NimR-like_N, AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain	NA|426aa|down_9|NZ_AP021867.1_3653606_3654884_-	PRK05614, gltA, citrate synthase
GCF_009618035.1_ASM961803v1	NZ_AP021867	Stenotrophomonas maltophilia strain KMM 349	12	3850380-3850459	12	CRISPRCasFinder	no		cas3,WYL,DEDDh,csa3,DinG,PD-DExK	Orphan	CGACCAAGGTCGACACCTACCAGAGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,csa3,DinG,PD-DExK	NA|202aa|up_7|NZ_AP021867.1_3843518_3844124_+,NA|79aa|up_4|NZ_AP021867.1_3846783_3847020_+,NA|112aa|up_1|NZ_AP021867.1_3848835_3849171_-,NA	NA|713aa|up_9|NZ_AP021867.1_3838271_3840410_+	PRK10003, PRK10003, ferric-rhodotorulic acid outer membrane transporter; Provisional	NA|954aa|up_8|NZ_AP021867.1_3840558_3843420_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|202aa|up_7|NZ_AP021867.1_3843518_3844124_+	NA	NA|136aa|up_6|NZ_AP021867.1_3844133_3844541_-	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion]	NA|662aa|up_5|NZ_AP021867.1_3844692_3846678_+	PRK11619, PRK11619, lytic murein transglycosylase; Provisional	NA|79aa|up_4|NZ_AP021867.1_3846783_3847020_+	NA	NA|407aa|up_3|NZ_AP021867.1_3847061_3848282_+	PRK10885, cca, multifunctional CCA addition/repair protein	NA|145aa|up_2|NZ_AP021867.1_3848351_3848786_-	pfam07179, SseB, SseB protein N-terminal domain	NA|112aa|up_1|NZ_AP021867.1_3848835_3849171_-	NA	NA|388aa|up_0|NZ_AP021867.1_3849174_3850338_-	pfam03572, Peptidase_S41, Peptidase family S41	NA|1010aa|down_0|NZ_AP021867.1_3850490_3853520_-	cd01344, PL2_Passenger_AT, Pertactin-like passenger domains (virulence factors), C-terminal, subgroup 2, of autotransporter proteins of the type V secretion system of Gram-negative bacteria	NA|356aa|down_1|NZ_AP021867.1_3853830_3854898_-	COG4299, COG4299, Uncharacterized protein conserved in bacteria [Function unknown]	NA|383aa|down_2|NZ_AP021867.1_3854897_3856046_-	COG1820, NagA, N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]	NA|343aa|down_3|NZ_AP021867.1_3856045_3857074_-	COG2222, AgaS, Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]	NA|356aa|down_4|NZ_AP021867.1_3857081_3858149_-	cd01545, PBP1_SalR, ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators	NA|430aa|down_5|NZ_AP021867.1_3858188_3859478_-	cd17394, MFS_FucP_like, Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters	NA|340aa|down_6|NZ_AP021867.1_3859854_3860874_+	PRK12408, PRK12408, glucokinase; Provisional	NA|903aa|down_7|NZ_AP021867.1_3861017_3863726_+	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor	NA|786aa|down_8|NZ_AP021867.1_3863837_3866195_+	cd06563, GH20_chitobiase-like, The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin	NA|131aa|down_9|NZ_AP021867.1_3866407_3866800_-	COG5652, COG5652, Predicted integral membrane protein [Function unknown]
GCF_009618035.1_ASM961803v1	NZ_AP021867	Stenotrophomonas maltophilia strain KMM 349	13	4192027-4192137	13	CRISPRCasFinder	no	PD-DExK	cas3,WYL,DEDDh,csa3,DinG,PD-DExK	Unclear	GGTACTGCCGGCCGCTGGCCGGCAACCTCGCGAAC	35	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,csa3,DinG,PD-DExK	NA,NA|218aa|down_8|NZ_AP021867.1_4200350_4201004_-,NA|180aa|down_9|NZ_AP021867.1_4201129_4201669_+	NA|265aa|up_9|NZ_AP021867.1_4183011_4183806_-	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC	NA|344aa|up_8|NZ_AP021867.1_4183880_4184912_-	PRK00188, trpD, anthranilate phosphoribosyltransferase; Provisional	NA|196aa|up_7|NZ_AP021867.1_4184928_4185516_-	PRK05670, PRK05670, anthranilate synthase component II; Provisional	NA|260aa|up_6|NZ_AP021867.1_4185518_4186298_-	pfam04402, SIMPL, Protein of unknown function (DUF541)	NA|492aa|up_5|NZ_AP021867.1_4186365_4187841_-	PRK13565, PRK13565, anthranilate synthase component I; Provisional	NA|318aa|up_4|NZ_AP021867.1_4188122_4189076_-	PRK13054, PRK13054, lipid kinase; Reviewed	NA|161aa|up_3|NZ_AP021867.1_4189337_4189820_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|225aa|up_2|NZ_AP021867.1_4189879_4190554_-	PRK08745, PRK08745, ribulose-phosphate 3-epimerase; Provisional	NA|110aa|up_1|NZ_AP021867.1_4190584_4190914_-	PRK09430, djlA, co-chaperone DjlA	NA|309aa|up_0|NZ_AP021867.1_4191055_4191982_+	PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional	NA|162aa|down_0|NZ_AP021867.1_4192201_4192687_+	COG4539, COG4539, Predicted membrane protein [Function unknown]	NA|943aa|down_1|NZ_AP021867.1_4193020_4195849_+	PRK12648, PRK12648, putative monovalent cation/H+ antiporter subunit A; Reviewed	NA|131aa|down_2|NZ_AP021867.1_4195848_4196241_+	PRK09094, PRK09094, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|512aa|down_3|NZ_AP021867.1_4196237_4197773_+	PRK12666, PRK12666, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|169aa|down_4|NZ_AP021867.1_4197769_4198276_+	PRK08965, PRK08965, putative monovalent cation/H+ antiporter subunit E; Reviewed	NA|95aa|down_5|NZ_AP021867.1_4198272_4198557_+	PRK06161, PRK06161, putative monovalent cation/H+ antiporter subunit F; Reviewed	NA|130aa|down_6|NZ_AP021867.1_4198553_4198943_+	PRK12674, PRK12674, putative monovalent cation/H+ antiporter subunit G; Reviewed	NA|322aa|down_7|NZ_AP021867.1_4199311_4200277_-	COG0530, ECM27, Ca2+/Na+ antiporter [Inorganic ion transport and metabolism]	NA|218aa|down_8|NZ_AP021867.1_4200350_4201004_-	NA	NA|180aa|down_9|NZ_AP021867.1_4201129_4201669_+	NA
GCF_009618035.1_ASM961803v1	NZ_AP021867	Stenotrophomonas maltophilia strain KMM 349	14	4198945-4199043	14	CRISPRCasFinder	no	PD-DExK,WYL	cas3,WYL,DEDDh,csa3,DinG,PD-DExK	Unclear	CCCGGTAGAGGCCGACCTTGGCCGG	25	1	1	4198970-4199018	NZ_AP021867.1_4199119-4199167	NA	1	1	Orphan	cas3,WYL,DEDDh,csa3,DinG,PD-DExK	NA,NA|218aa|down_1|NZ_AP021867.1_4200350_4201004_-,NA|180aa|down_2|NZ_AP021867.1_4201129_4201669_+,NA|380aa|down_7|NZ_AP021867.1_4206091_4207231_-	NA|225aa|up_9|NZ_AP021867.1_4189879_4190554_-	PRK08745, PRK08745, ribulose-phosphate 3-epimerase; Provisional	NA|110aa|up_8|NZ_AP021867.1_4190584_4190914_-	PRK09430, djlA, co-chaperone DjlA	NA|309aa|up_7|NZ_AP021867.1_4191055_4191982_+	PRK13961, PRK13961, phosphoribosylaminoimidazole-succinocarboxamide synthase; Provisional	NA|162aa|up_6|NZ_AP021867.1_4192201_4192687_+	COG4539, COG4539, Predicted membrane protein [Function unknown]	NA|943aa|up_5|NZ_AP021867.1_4193020_4195849_+	PRK12648, PRK12648, putative monovalent cation/H+ antiporter subunit A; Reviewed	NA|131aa|up_4|NZ_AP021867.1_4195848_4196241_+	PRK09094, PRK09094, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|512aa|up_3|NZ_AP021867.1_4196237_4197773_+	PRK12666, PRK12666, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|169aa|up_2|NZ_AP021867.1_4197769_4198276_+	PRK08965, PRK08965, putative monovalent cation/H+ antiporter subunit E; Reviewed	NA|95aa|up_1|NZ_AP021867.1_4198272_4198557_+	PRK06161, PRK06161, putative monovalent cation/H+ antiporter subunit F; Reviewed	NA|130aa|up_0|NZ_AP021867.1_4198553_4198943_+	PRK12674, PRK12674, putative monovalent cation/H+ antiporter subunit G; Reviewed	NA|322aa|down_0|NZ_AP021867.1_4199311_4200277_-	COG0530, ECM27, Ca2+/Na+ antiporter [Inorganic ion transport and metabolism]	NA|218aa|down_1|NZ_AP021867.1_4200350_4201004_-	NA	NA|180aa|down_2|NZ_AP021867.1_4201129_4201669_+	NA	NA|433aa|down_3|NZ_AP021867.1_4201751_4203050_-	PRK05341, PRK05341, homogentisate 1,2-dioxygenase; Provisional	NA|371aa|down_4|NZ_AP021867.1_4203135_4204248_-	COG3185, COG3185, 4-hydroxyphenylpyruvate dioxygenase and related hemolysins [Amino acid transport and metabolism / General function prediction only]	NA|186aa|down_5|NZ_AP021867.1_4204314_4204872_+	COG1846, MarR, Transcriptional regulators [Transcription]	PD-DExK|324aa|down_6|NZ_AP021867.1_4205101_4206073_+	pfam06250, DUF1016, Protein of unknown function (DUF1016)	NA|380aa|down_7|NZ_AP021867.1_4206091_4207231_-	NA	NA|200aa|down_8|NZ_AP021867.1_4207483_4208083_-	pfam13899, Thioredoxin_7, Thioredoxin-like	NA|500aa|down_9|NZ_AP021867.1_4208102_4209602_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]
GCF_009618035.1_ASM961803v1	NZ_AP021867	Stenotrophomonas maltophilia strain KMM 349	15	4260434-4260535	15	CRISPRCasFinder	no		cas3,WYL,DEDDh,csa3,DinG,PD-DExK	Orphan	GCCAACCAAGGTTGGCAACTACC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,csa3,DinG,PD-DExK	NA|256aa|up_6|NZ_AP021867.1_4252123_4252891_-,NA|416aa|up_5|NZ_AP021867.1_4252965_4254213_-,NA|103aa|up_4|NZ_AP021867.1_4254383_4254692_-,NA|129aa|up_1|NZ_AP021867.1_4257287_4257674_-,NA|198aa|down_5|NZ_AP021867.1_4266159_4266753_+	NA|414aa|up_9|NZ_AP021867.1_4248798_4250040_-	TIGR03434, ADOP, Acidobacterial duplicated orphan permease	NA|436aa|up_8|NZ_AP021867.1_4250042_4251350_-	TIGR03434, ADOP, Acidobacterial duplicated orphan permease	NA|258aa|up_7|NZ_AP021867.1_4251360_4252134_-	pfam13578, Methyltransf_24, Methyltransferase domain	NA|256aa|up_6|NZ_AP021867.1_4252123_4252891_-	NA	NA|416aa|up_5|NZ_AP021867.1_4252965_4254213_-	NA	NA|103aa|up_4|NZ_AP021867.1_4254383_4254692_-	NA	NA|117aa|up_3|NZ_AP021867.1_4255139_4255490_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|500aa|up_2|NZ_AP021867.1_4255619_4257119_+	COG0606, COG0606, Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]	NA|129aa|up_1|NZ_AP021867.1_4257287_4257674_-	NA	NA|773aa|up_0|NZ_AP021867.1_4257794_4260113_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|278aa|down_0|NZ_AP021867.1_4260554_4261388_-	PRK10513, PRK10513, sugar phosphate phosphatase; Provisional	NA|221aa|down_1|NZ_AP021867.1_4261537_4262200_+	pfam06055, ExoD, Exopolysaccharide synthesis, ExoD	NA|437aa|down_2|NZ_AP021867.1_4262339_4263650_-	COG2133, COG2133, Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]	NA|147aa|down_3|NZ_AP021867.1_4263642_4264083_-	COG4244, COG4244, Predicted membrane protein [Function unknown]	NA|589aa|down_4|NZ_AP021867.1_4264393_4266160_+	cd04059, Peptidases_S8_Protein_convertases_Kexins_Furin-like, Peptidase S8 family domain in Protein convertases	NA|198aa|down_5|NZ_AP021867.1_4266159_4266753_+	NA	NA|224aa|down_6|NZ_AP021867.1_4266879_4267551_-	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold	NA|111aa|down_7|NZ_AP021867.1_4267694_4268027_-	TIGR02847, Cytochrome_bo3_ubiquinol_oxidase_subunit_4, cytochrome o ubiquinol oxidase subunit IV	NA|212aa|down_8|NZ_AP021867.1_4268028_4268664_-	TIGR02842, Cytochrome_bo3_ubiquinol_oxidase_subunit_3, cytochrome o ubiquinol oxidase, subunit III	NA|659aa|down_9|NZ_AP021867.1_4268660_4270637_-	TIGR02843, Cytochrome_bo3_ubiquinol_oxidase_subunit_1, cytochrome o ubiquinol oxidase, subunit I
GCF_009618035.1_ASM961803v1	NZ_AP021867	Stenotrophomonas maltophilia strain KMM 349	16	4502044-4502146	16	CRISPRCasFinder	no		cas3,WYL,DEDDh,csa3,DinG,PD-DExK	Orphan	GTTGCCAACCTTGGTTGGCGCCG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,csa3,DinG,PD-DExK	NA|304aa|up_7|NZ_AP021867.1_4494084_4494996_+,NA	NA|612aa|up_9|NZ_AP021867.1_4491479_4493315_+	COG2804, PulE, Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]	NA|249aa|up_8|NZ_AP021867.1_4493286_4494033_+	PRK09065, PRK09065, glutamine amidotransferase; Provisional	NA|304aa|up_7|NZ_AP021867.1_4494084_4494996_+	NA	NA|250aa|up_6|NZ_AP021867.1_4495084_4495834_-	PRK10921, PRK10921, Sec-independent protein translocase subunit TatC	NA|163aa|up_5|NZ_AP021867.1_4495830_4496319_-	PRK04654, PRK04654, sec-independent translocase; Provisional	NA|76aa|up_4|NZ_AP021867.1_4496334_4496562_-	PRK04561, tatA, twin arginine translocase protein A; Provisional	NA|300aa|up_3|NZ_AP021867.1_4496637_4497537_-	cd11524, SYLF, The SYLF domain (also called DUF500), a novel lipid-binding module	NA|321aa|up_2|NZ_AP021867.1_4497702_4498665_+	PRK00035, hemH, ferrochelatase; Reviewed	NA|285aa|up_1|NZ_AP021867.1_4498661_4499516_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|702aa|up_0|NZ_AP021867.1_4499806_4501912_+	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|396aa|down_0|NZ_AP021867.1_4513855_4515043_+	pfam03594, BenE, Benzoate membrane transport protein	NA|258aa|down_1|NZ_AP021867.1_4515049_4515823_-	pfam14237, DUF4339, Domain of unknown function (DUF4339)	NA|289aa|down_2|NZ_AP021867.1_4515873_4516740_-	cd09020, D-hex-6-P-epi_like, D-hexose-6-phosphate epimerase-like	NA|423aa|down_3|NZ_AP021867.1_4516780_4518049_-	pfam13406, SLT_2, Transglycosylase SLT domain	NA|325aa|down_4|NZ_AP021867.1_4518133_4519108_-	TIGR03438, conserved_hypothetical_protein, dimethylhistidine N-methyltransferase	NA|424aa|down_5|NZ_AP021867.1_4519104_4520376_-	TIGR03440, egtB_TIGR03440, ergothioneine biosynthesis protein EgtB	NA|427aa|down_6|NZ_AP021867.1_4520526_4521807_+	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|131aa|down_7|NZ_AP021867.1_4521810_4522203_-	PRK04233, PRK04233, hypothetical protein; Provisional	NA|260aa|down_8|NZ_AP021867.1_4522306_4523086_+	PRK10621, PRK10621, hypothetical protein; Provisional	NA|1127aa|down_9|NZ_AP021867.1_4523182_4526563_-	COG4913, COG4913, Uncharacterized protein conserved in bacteria [Function unknown]
