The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP045751	Listeria monocytogenes CFSAN002349 chromosome, complete genome	2942451	402395	460958	2942451	protease,tRNA	Streptococcus_phage(16.67%)	57	NA	NA
WP_003726416.1|402395_404102_-|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_010958886.1|404142_405405_-|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_003726414.1|405418_406561_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_003727496.1|406575_407364_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003727497.1|407377_408136_-	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	42.1	4.4e-22
WP_003723450.1|408366_408924_-	ribosome recycling factor	NA	NA	NA	NA	NA
WP_003723449.1|408923_409652_-	UMP kinase	NA	NA	NA	NA	NA
WP_003727498.1|409944_410319_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012681273.1|410296_411502_+	helicase SNF2	NA	L0P6E9	Lactobacillus_phage	46.6	7.0e-91
WP_003731336.1|411491_412796_+	DUF3440 domain-containing protein	NA	A0A220GKF8	Streptococcus_phage	52.1	1.2e-133
WP_003726669.1|412805_413312_+	ParB-like nuclease domain-containing protein	NA	A0A220GKT8	Streptococcus_phage	66.7	1.4e-56
WP_003726668.1|413333_414065_+	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	58.0	2.3e-81
WP_003726667.1|414113_414353_-	YneF family protein	NA	NA	NA	NA	NA
WP_003734516.1|414573_416568_-	transketolase	NA	NA	NA	NA	NA
WP_003727501.1|416714_416942_-	DUF896 domain-containing protein	NA	NA	NA	NA	NA
WP_003727502.1|417036_417366_-	cell division suppressor protein YneA	NA	NA	NA	NA	NA
WP_003723438.1|417521_418136_+	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	62.1	9.3e-15
WP_003734519.1|418166_418691_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_010958885.1|418724_420020_-	arsenic transporter	NA	A0A2H4PQU3	Staphylococcus_phage	62.6	1.1e-147
WP_003723435.1|420163_421498_-	type I glutamate--ammonia ligase	NA	A0A1V0SJ53	Klosneuvirus	26.4	2.0e-06
WP_003719570.1|421568_421937_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003727505.1|422138_423365_-	methionine gamma-lyase family protein	NA	NA	NA	NA	NA
WP_074467458.1|423357_424581_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003719566.1|424691_424925_-	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_003726658.1|425046_425964_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003723738.1|426090_427767_-	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_003726657.1|427999_428698_-	glycerophosphodiester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	31.9	6.4e-12
WP_003727507.1|428910_430797_+	acetyltransferase	NA	B5WZU0	Pseudomonas_phage	32.2	3.8e-43
WP_048666914.1|430829_432614_-	class 1 internalin InlK	NA	NA	NA	NA	NA
WP_003726814.1|433241_433709_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
WP_003734522.1|433791_436251_-	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	31.6	1.1e-101
WP_003727510.1|436247_438215_-	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	42.5	5.1e-123
WP_003727511.1|438395_438803_-	CoA-binding protein	NA	NA	NA	NA	NA
WP_003726698.1|438960_439557_+	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_003726697.1|439598_440471_-	aldose 1-epimerase family protein	NA	NA	NA	NA	NA
WP_003724130.1|440473_440785_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003727513.1|440807_441227_-	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003726695.1|441329_442109_-	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA	NA
WP_048666912.1|442129_443539_-|protease	ATP-dependent protease ATPase subunit HslU	protease	W6AS21	Erwinia_phage	27.8	5.8e-44
WP_003724001.1|443552_444092_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003731303.1|444112_445015_-	tyrosine recombinase XerC	NA	A0A142K7N4	Mycobacterium_phage	29.5	1.8e-14
WP_003726401.1|445297_446602_-|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	tRNA	NA	NA	NA	NA
WP_003727517.1|446664_448743_-	type I DNA topoisomerase	NA	A0A1V0SB35	Catovirus	37.5	5.4e-107
WP_003727518.1|449015_449876_-	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_003727519.1|450009_450795_-	ribonuclease HII	NA	G4YAY0	Emiliania_huxleyi_virus	37.6	6.7e-26
WP_003726396.1|450791_451655_-	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
WP_003727520.1|451664_452207_-	type I signal peptidase SipZ	NA	NA	NA	NA	NA
WP_003726394.1|452308_452878_-	type I signal peptidase SipY	NA	NA	NA	NA	NA
WP_003726393.1|452912_453479_-	type I signal peptidase SipX	NA	NA	NA	NA	NA
WP_003723886.1|453597_454857_-|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	63.2	1.4e-145
WP_003723884.1|455041_456325_-	trigger factor	NA	NA	NA	NA	NA
WP_003727521.1|456439_457378_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003731300.1|457639_458305_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003727523.1|458320_458854_-|protease	matrixin family metalloprotease	protease	NA	NA	NA	NA
WP_003727524.1|458977_459193_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003723563.1|459343_459739_+	helix-turn-helix transcriptional regulator	NA	A9D9J6	Lactobacillus_prophage	57.4	1.3e-14
WP_003734523.1|459818_460958_+|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 2
NZ_CP045751	Listeria monocytogenes CFSAN002349 chromosome, complete genome	2942451	1614364	1620891	2942451	tail	Streptococcus_pyogenes_phage(33.33%)	10	NA	NA
WP_003728210.1|1614364_1615183_-|tail	phage tail family protein	tail	A0A060AFE1	Staphylococcus_phage	35.0	9.4e-39
WP_048666707.1|1615179_1617048_-	membrane protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	45.8	3.5e-20
WP_003740367.1|1617034_1617439_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003721745.1|1617480_1617783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003721744.1|1617830_1618343_-|tail	phage major tail protein, TP901-1 family	tail	A0A097PBF4	Streptococcus_pyogenes_phage	62.7	1.2e-47
WP_003728212.1|1618355_1618745_-	DUF5072 domain-containing protein	NA	NA	NA	NA	NA
WP_003724947.1|1619024_1619441_-	hypothetical protein	NA	A8ASQ1	Listeria_phage	38.6	1.3e-20
WP_003724946.1|1619452_1619881_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003721740.1|1620097_1620433_+	helix-turn-helix transcriptional regulator	NA	A0A2H4JAR9	uncultured_Caudovirales_phage	52.5	4.0e-20
WP_003728215.1|1620438_1620891_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A059T7S0	Listeria_phage	47.9	4.0e-31
>prophage 3
NZ_CP045751	Listeria monocytogenes CFSAN002349 chromosome, complete genome	2942451	2151728	2159573	2942451		Streptococcus_phage(50.0%)	7	NA	NA
WP_003722610.1|2151728_2152688_+	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	53.7	2.0e-88
WP_003725411.1|2152807_2153791_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	38.1	4.0e-52
WP_003741152.1|2153807_2154869_+	galactose mutarotase	NA	NA	NA	NA	NA
WP_003725409.1|2154910_2156641_+	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	53.1	9.5e-174
WP_003722606.1|2156748_2157624_+	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.7	1.9e-08
WP_003734495.1|2157625_2158594_+	YvcK family protein	NA	A1IMD5	Streptococcus_phage	43.6	1.8e-68
WP_003725407.1|2158601_2159573_+	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	39.4	5.2e-52
>prophage 4
NZ_CP045751	Listeria monocytogenes CFSAN002349 chromosome, complete genome	2942451	2845238	2853524	2942451		Synechococcus_phage(33.33%)	8	NA	NA
WP_003729814.1|2845238_2846531_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.0	2.5e-17
WP_048667022.1|2846611_2847325_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	38.3	1.5e-40
WP_003722248.1|2847336_2847582_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_003726212.1|2847585_2848269_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_009918191.1|2848261_2850481_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	40.8	6.5e-159
WP_003722245.1|2850465_2851893_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.6	1.1e-53
WP_003726210.1|2851911_2852961_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	44.4	3.2e-63
WP_003726209.1|2852957_2853524_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	36.4	8.3e-26
