The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP045753	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189 chromosome, complete genome	4726706	504802	515418	4726706		Morganella_phage(25.0%)	12	NA	NA
WP_001157322.1|504802_506233_-	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
WP_017441839.1|506306_507002_-	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.1	2.8e-07
WP_020839257.1|507081_507393_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020839256.1|508042_509254_+	porin	NA	Q1MVN1	Enterobacteria_phage	56.5	3.4e-109
WP_024131163.1|509513_509702_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000208509.1|509712_509925_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
WP_017465541.1|510379_511648_-	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	91.7	3.5e-226
WP_000394197.1|511650_512070_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
WP_001532308.1|512196_512358_-	hypothetical protein	NA	NA	NA	NA	NA
WP_017465540.1|512838_513636_+	DgsA anti-repressor MtfA	NA	NA	NA	NA	NA
WP_001736108.1|514007_514298_+	DUF4102 domain-containing protein	NA	B7SYF8	Stenotrophomonas_phage	49.1	3.0e-08
WP_017465538.1|514944_515418_+	peptidase	NA	A0A0F6TJ61	Escherichia_coli_O157_typing_phage	76.6	1.6e-38
>prophage 2
NZ_CP045753	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189 chromosome, complete genome	4726706	682113	691284	4726706	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000195334.1|682113_684147_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
WP_000703137.1|684387_684846_+	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	72.5	8.4e-53
WP_001197951.1|685017_685548_+	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000950413.1|685604_686072_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_000598637.1|686118_686838_-	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000272850.1|686834_688520_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
WP_001240418.1|688742_689474_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_001261696.1|689533_689641_+	protein YohO	NA	NA	NA	NA	NA
WP_000824854.1|689621_690353_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000569168.1|690336_691284_-	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	2.8e-10
>prophage 3
NZ_CP045753	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189 chromosome, complete genome	4726706	3077133	3087807	4726706		Enterobacteria_phage(55.56%)	12	NA	NA
WP_000152566.1|3077133_3078153_-	NAD(P)-dependent alcohol dehydrogenase	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	30.1	1.7e-42
WP_020839656.1|3078623_3079883_+	DUF4102 domain-containing protein	NA	B7SYF8	Stenotrophomonas_phage	41.2	3.7e-74
WP_000970946.1|3079936_3080932_-	site-specific DNA-methyltransferase	NA	S0A236	Cellulophaga_phage	24.2	3.5e-19
WP_010376679.1|3080987_3081224_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_020839655.1|3081220_3081784_+	type II restriction endonuclease PvuII	NA	A0A1B0UXL9	Roseobacter_phage	42.9	5.5e-30
WP_020839654.1|3082003_3082570_-	phage polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	62.7	2.6e-56
WP_000984205.1|3082586_3082832_-	transcriptional regulator	NA	Q7M294	Enterobacteria_phage	77.8	1.6e-31
WP_020839652.1|3082828_3083566_-	hypothetical protein	NA	Q7M2A2	Enterobacteria_phage	65.7	3.1e-81
WP_020839651.1|3084366_3084918_+	ash family protein	NA	Q7M2A7	Enterobacteria_phage	71.3	1.1e-35
WP_001604623.1|3084914_3085142_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000743150.1|3085138_3085459_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020839650.1|3085473_3087807_+	DNA primase	NA	Q7M2A8	Enterobacteria_phage	84.3	0.0e+00
>prophage 4
NZ_CP045753	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189 chromosome, complete genome	4726706	4220874	4321815	4726706	transposase,holin,terminase,tail,integrase,lysis,protease,portal,tRNA,head,capsid	Enterobacteria_phage(32.69%)	98	4216318:4216334	4296340:4296356
4216318:4216334	attL	GATGTGGCGCAACTGAG	NA	NA	NA	NA
WP_001154028.1|4220874_4221678_+|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	tRNA	NA	NA	NA	NA
WP_001288828.1|4221670_4222993_+	chromosome partition protein MukF	NA	NA	NA	NA	NA
WP_000060025.1|4222973_4223678_+	chromosome partition protein MukE	NA	NA	NA	NA	NA
WP_017440920.1|4223677_4228144_+	chromosome partition protein MukB	NA	NA	NA	NA	NA
WP_020839442.1|4228488_4230312_+	L,D-transpeptidase	NA	NA	NA	NA	NA
WP_000357052.1|4230571_4231120_+	YcbK family protein	NA	A0A0K1LKR7	Rhodobacter_phage	33.7	1.2e-05
WP_001109471.1|4231147_4231795_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_000462653.1|4231856_4233047_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA	NA
WP_020839441.1|4233231_4234323_-	porin OmpF	NA	Q1MVN1	Enterobacteria_phage	51.5	2.8e-99
WP_000117867.1|4234928_4236329_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2K9V902	Bandra_megavirus	35.8	4.5e-81
WP_000762343.1|4236529_4236991_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_000544857.1|4237308_4238523_+	diaminopropionate ammonia-lyase	NA	NA	NA	NA	NA
WP_020839440.1|4238768_4240202_+	sodium:alanine symporter family protein	NA	NA	NA	NA	NA
WP_000191404.1|4240282_4241485_-	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_001262314.1|4241679_4242972_-|integrase	site-specific integrase	integrase	S4TSP2	Salmonella_phage	99.5	1.3e-252
WP_000065276.1|4243016_4243265_-	excisionase family protein	NA	S4TND0	Salmonella_phage	100.0	4.7e-42
WP_001237031.1|4243305_4243545_-	DUF4060 family protein	NA	S4TR31	Salmonella_phage	100.0	2.0e-37
WP_077906096.1|4243587_4244745_-	recombinase RecT	NA	S4TTE8	Salmonella_phage	98.7	6.7e-216
WP_000023724.1|4244707_4247887_-	DNA breaking-rejoining protein	NA	H6WRX1	Salmonella_phage	68.2	0.0e+00
WP_000799631.1|4248016_4248352_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000613375.1|4248426_4248711_-	hypothetical protein	NA	K7PGY4	Enterobacteria_phage	53.2	1.7e-08
WP_024135615.1|4249141_4249321_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001224472.1|4249764_4250190_-	helix-turn-helix domain-containing protein	NA	K7PH71	Enterobacterial_phage	56.3	1.2e-13
WP_001033909.1|4250286_4250541_+	helix-turn-helix transcriptional regulator	NA	K7PKH4	Enterobacteria_phage	59.4	1.2e-16
WP_001669257.1|4250527_4251022_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020839439.1|4251066_4251942_+	hypothetical protein	NA	A0A088CD36	Shigella_phage	58.5	1.2e-31
WP_000788952.1|4251948_4252701_+	DNA replication protein DnaC	NA	A0A088CBP4	Shigella_phage	77.0	1.7e-103
WP_000089413.1|4252718_4253114_+	DUF977 family protein	NA	A0A088CBK9	Shigella_phage	39.3	2.0e-18
WP_001669261.1|4253543_4254035_+	DUF1076 domain-containing protein	NA	B6DZB9	Enterobacteria_phage	51.5	9.7e-23
WP_024135617.1|4254254_4254560_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000940758.1|4254623_4255223_+	DUF1367 family protein	NA	A0A0U2RT94	Escherichia_phage	82.9	6.1e-96
WP_000784707.1|4255219_4255447_+	DNA breaking-rejoining protein	NA	A0A0M4RU10	Salmonella_phage	76.8	6.6e-19
WP_001617856.1|4255443_4255590_+	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	97.9	4.3e-19
WP_020839436.1|4255579_4256377_+	antitermination protein	NA	A0A0M4S661	Salmonella_phage	99.2	3.4e-150
WP_001534733.1|4256775_4256901_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000798706.1|4257036_4257486_-	lipoprotein	NA	NA	NA	NA	NA
WP_001110788.1|4257846_4258533_-	PipA/GogA/GtgA family type III secretion system effector	NA	Q9MBM2	Phage_Gifsy-1	98.7	5.1e-131
WP_001574216.1|4258808_4259138_+|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
WP_000984587.1|4259121_4259574_+	lysozyme	NA	A0A0M4R365	Salmonella_phage	98.0	5.1e-79
WP_001533543.1|4259591_4260044_+|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	92.7	2.9e-66
WP_000669693.1|4260279_4260681_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001102153.1|4260966_4261512_+|terminase	terminase small subunit	terminase	A0A0U2S671	Escherichia_phage	80.6	1.5e-56
WP_000623086.1|4261483_4263415_+|terminase	phage terminase large subunit family protein	terminase	A0A0K2FJ14	Enterobacteria_phage	65.4	2.0e-257
WP_000201416.1|4263398_4263602_+|head,tail	head-tail joining protein	head,tail	K7PM10	Enterobacteria_phage	70.8	2.1e-16
WP_000831820.1|4263598_4265179_+|portal	phage portal protein	portal	K7P6U7	Enterobacteria_phage	62.8	1.2e-188
WP_001189495.1|4265168_4266665_+	S49 family peptidase	NA	A0A0K2FI53	Enterobacteria_phage	52.9	3.3e-98
WP_000011260.1|4266677_4267025_+|head	head decoration protein	head	A0A2R9YJN3	Escherichia_phage	52.7	9.2e-20
WP_000522566.1|4267079_4268108_+|capsid	major capsid protein	capsid	C6ZCY2	Enterobacteria_phage	61.1	1.7e-114
WP_000201486.1|4268165_4268525_+	DNA packaging protein	NA	NA	NA	NA	NA
WP_000083292.1|4268535_4268919_+|tail	tail attachment protein	tail	A0A0K2FJB7	Enterobacteria_phage	55.6	1.2e-28
WP_000817265.1|4268951_4270082_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	Q9G0F2	Phage_Gifsy-1	98.1	4.0e-213
WP_000677089.1|4270190_4270769_+|tail	phage tail protein	tail	A5LH33	Enterobacteria_phage	80.2	3.7e-82
WP_000033885.1|4270765_4271167_+|tail	tail protein	tail	Q9G0F3	Phage_Gifsy-1	100.0	8.1e-52
WP_000971954.1|4271174_4271921_+|tail	tail protein	tail	A0A291AWU6	Escherichia_phage	76.9	1.9e-99
WP_000479607.1|4271971_4272367_+|tail	phage minor tail protein G	tail	A5LH36	Enterobacteria_phage	56.5	2.3e-30
WP_010989052.1|4272363_4272702_+|tail	phage tail assembly protein T	tail	A5LH37	Enterobacteria_phage	62.4	1.3e-31
WP_000372075.1|4272673_4275769_+|tail	phage tail tape measure protein	tail	A0A291AWX1	Escherichia_phage	61.7	4.8e-277
WP_000447370.1|4275771_4276101_+|tail	phage tail protein	tail	A5LH39	Enterobacteria_phage	71.3	7.3e-43
WP_001152686.1|4276110_4276809_+|tail	phage minor tail protein L	tail	A0A1B5FP81	Escherichia_phage	75.9	1.6e-103
WP_000662738.1|4276815_4277553_+|tail	phage tail protein	tail	K7PLW1	Enterobacteria_phage	84.2	9.8e-128
WP_001750110.1|4277450_4278098_+|tail	tail assembly protein	tail	A5LH42	Enterobacteria_phage	78.1	1.6e-89
WP_000514902.1|4278159_4281522_+	host specificity protein J	NA	K7PKJ2	Enterobacteria_phage	79.5	0.0e+00
WP_000178849.1|4281560_4281803_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023193196.1|4281856_4284352_+|tail	Gifsy-2 prophage tail fiber protein	tail	E5G6P0	Salmonella_phage	76.1	7.3e-159
WP_000143168.1|4284351_4284933_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	88.9	3.3e-94
WP_010835411.1|4285762_4287253_-	type III secretion effector GogB	NA	Q9MBM1	Phage_Gifsy-1	98.6	1.6e-254
WP_001536069.1|4287820_4288621_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000497440.1|4289096_4289303_-	DinI-like family protein	NA	S4TNM0	Salmonella_phage	100.0	1.8e-31
WP_020839435.1|4289729_4292342_+	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.8	2.2e-20
WP_000291723.1|4292549_4293560_+	quinone-dependent dihydroorotate dehydrogenase	NA	NA	NA	NA	NA
WP_001220671.1|4293725_4294268_+	cell division protein ZapC	NA	NA	NA	NA	NA
WP_000224075.1|4294264_4295374_-	MOSC domain-containing protein	NA	NA	NA	NA	NA
WP_020839434.1|4295472_4297581_+	bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL	NA	NA	NA	NA	NA
4296340:4296356	attR	GATGTGGCGCAACTGAG	NA	NA	NA	NA
WP_000053044.1|4297593_4299501_+	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
WP_000333153.1|4299515_4300769_+	membrane integrity-associated transporter subunit PqiA	NA	NA	NA	NA	NA
WP_000433416.1|4300773_4302414_+	intermembrane transport protein PqiB	NA	NA	NA	NA	NA
WP_000759136.1|4302410_4302974_+	membrane integrity-associated transporter subunit PqiC	NA	NA	NA	NA	NA
WP_001537784.1|4303229_4303397_+	ribosome modulation factor	NA	NA	NA	NA	NA
WP_000227928.1|4303496_4304015_-	bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase	NA	NA	NA	NA	NA
WP_000156448.1|4304083_4305844_-|protease	Lon protease family protein	protease	NA	NA	NA	NA
WP_000877172.1|4306029_4306482_+	macrodomain Ter protein MatP	NA	NA	NA	NA	NA
WP_023193195.1|4306553_4307606_-	porin OmpA	NA	NA	NA	NA	NA
WP_000288732.1|4307962_4308472_-	cell division inhibitor SulA	NA	NA	NA	NA	NA
WP_001202375.1|4308688_4309294_+	TfoX/Sxy family DNA transformation protein	NA	NA	NA	NA	NA
WP_000950869.1|4309280_4311434_-	TIGR01666 family membrane protein	NA	NA	NA	NA	NA
WP_001261222.1|4311452_4311899_-	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_023193194.1|4312022_4314077_+	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.3	3.2e-19
WP_000424187.1|4314112_4314571_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_000847719.1|4314665_4315328_-	DUF2057 family protein	NA	NA	NA	NA	NA
WP_000975203.1|4315498_4315915_+	CoA-binding protein	NA	NA	NA	NA	NA
WP_000561983.1|4315959_4316277_-	heat shock protein HspQ	NA	NA	NA	NA	NA
WP_000140480.1|4316334_4317546_-	23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI	NA	NA	NA	NA	NA
WP_000859416.1|4317760_4318309_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_017465795.1|4318334_4319114_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_000072884.1|4319162_4319444_+	acylphosphatase	NA	NA	NA	NA	NA
WP_000904446.1|4319440_4319770_-	sulfurtransferase TusE	NA	NA	NA	NA	NA
WP_000374046.1|4319856_4320516_-|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	52.4	2.7e-44
WP_020839432.1|4321134_4321815_-|protease	type III secretion system effector protease PipA	protease	Q9MBM0	Phage_Gifsy-2	71.5	3.4e-82
>prophage 1
NZ_CP045752	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189 plasmid pCFSAN000189, complete sequence	81815	0	13316	81815	transposase	Sodalis_phage(12.5%)	14	NA	NA
WP_000728920.1|279_1221_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	Q2A0A7	Sodalis_phage	55.0	1.4e-73
WP_001749329.1|1851_2106_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000427674.1|2794_4000_+	ParA family protein	NA	A0A077SL49	Escherichia_phage	69.6	1.4e-163
WP_077909669.1|3996_4974_+	ParB/RepB/Spo0J family partition protein	NA	A0A1B0V750	Salmonella_phage	53.2	1.1e-83
WP_020833581.1|5055_6330_-	Y-family DNA polymerase	NA	F1C5A5	Cronobacter_phage	64.5	1.3e-156
WP_020833580.1|6932_7604_-	hypothetical protein	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	61.3	8.2e-81
WP_020833579.1|7963_8641_+	DNA methylase	NA	A0A2I7RE86	Vibrio_phage	37.4	1.5e-29
WP_020833578.1|8640_8862_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020833577.1|8872_9292_+	DUF1380 domain-containing protein	NA	NA	NA	NA	NA
WP_020833576.1|9346_10126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_020833575.1|10531_11038_+	antirestriction protein	NA	A0A1I9S7Y0	Rhodococcus_phage	28.9	1.1e-08
WP_020833574.1|11080_11272_+	hypothetical protein	NA	NA	NA	NA	NA
WP_114053208.1|12209_12431_-	hypothetical protein	NA	NA	NA	NA	NA
WP_020833571.1|12761_13316_+	single-stranded DNA-binding protein	NA	A0A0A0P1Q9	Enterobacteria_phage	74.0	9.5e-51
>prophage 2
NZ_CP045752	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189 plasmid pCFSAN000189, complete sequence	81815	19815	20640	81815		unidentified_phage(100.0%)	1	NA	NA
WP_020833564.1|19815_20640_+	N-6 DNA methylase	NA	H7BVT3	unidentified_phage	36.7	1.2e-09
>prophage 3
NZ_CP045752	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189 plasmid pCFSAN000189, complete sequence	81815	71092	72292	81815	transposase	uncultured_virus(100.0%)	1	NA	NA
WP_020833591.1|71092_72292_+|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	50.3	4.6e-50
