The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP036249	Enterococcus faecalis R712 chromosome, complete genome	2944359	367108	407774	2944359	transposase,integrase	Streptococcus_phage(22.22%)	37	363813:363828	374857:374872
363813:363828	attL	GAAAAAACAAGCGGAT	NA	NA	NA	NA
WP_002358446.1|367108_368278_-|integrase	site-specific integrase	integrase	A0A1B0T6A8	Bacillus_phage	28.6	4.6e-31
WP_002355366.1|368321_368552_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_033591375.1|369469_369721_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002364925.1|369707_370109_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_099434223.1|372060_373223_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	50.9	5.9e-79
WP_002367912.1|373459_377353_+	LPXTG-anchored aggregation substance	NA	NA	NA	NA	NA
374857:374872	attR	GAAAAAACAAGCGGAT	NA	NA	NA	NA
WP_002367913.1|377414_377768_+	pheromone response system RNA-binding regulator PrgU	NA	NA	NA	NA	NA
WP_002367914.1|377795_378653_+	pheromone response LPXTG-anchored adhesin PrgC	NA	NA	NA	NA	NA
WP_002367915.1|378694_379594_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002367916.1|379613_380048_+	hypothetical protein	NA	Q38339	Lactococcus_phage	37.5	5.9e-16
WP_002365858.1|380094_380322_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002367917.1|380335_380632_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002367918.1|380646_381447_+	PrgH	NA	NA	NA	NA	NA
WP_002367919.1|381448_381802_+	PrgI family protein	NA	NA	NA	NA	NA
WP_002367920.1|381908_384146_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002367921.1|384157_386671_+	CHAP domain-containing protein	NA	NA	NA	NA	NA
WP_002367922.1|387394_389329_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	28.2	1.7e-30
WP_002367923.1|389601_390228_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011109622.1|390205_390460_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002367924.1|390443_391052_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002367690.1|391206_391695_+	PcfB family protein	NA	NA	NA	NA	NA
WP_002367925.1|391694_393518_+	TraM recognition domain-containing protein	NA	NA	NA	NA	NA
WP_002367926.1|393534_393870_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002367927.1|393847_394144_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002390232.1|394200_396360_+	DUF3991 domain-containing protein	NA	NA	NA	NA	NA
WP_002367930.1|396392_396665_+	LtrD	NA	NA	NA	NA	NA
WP_002362408.1|396910_397267_+	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA	NA
WP_002367932.1|397267_398953_+	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA	NA
WP_002390234.1|398985_399336_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002370345.1|399851_401195_-	hypothetical protein	NA	A8ATM0	Listeria_phage	42.6	2.0e-102
WP_153916981.1|401254_401941_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	98.7	2.2e-126
WP_002389752.1|402279_402819_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002367936.1|403034_404252_+	amidohydrolase	NA	NA	NA	NA	NA
WP_002367937.1|404301_405558_+	amidohydrolase family protein	NA	NA	NA	NA	NA
WP_002367814.1|405784_406471_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.1	5.9e-127
WP_002370911.1|407081_407393_-|transposase	IS3 family transposase	transposase	A0A0N9SIX5	Staphylococcus_phage	65.6	1.6e-23
WP_002367939.1|407498_407774_-|transposase	transposase	transposase	A0A0N9S8A3	Staphylococcus_phage	40.9	1.1e-10
>prophage 2
NZ_CP036249	Enterococcus faecalis R712 chromosome, complete genome	2944359	769431	777354	2944359	transposase	Planktothrix_phage(16.67%)	11	NA	NA
WP_002355794.1|769431_770490_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.1	2.0e-17
WP_002361357.1|770489_771446_+	ATP-binding cassette domain-containing protein	NA	A0A1J0FA64	Only_Syngen_Nebraska_virus	23.9	4.2e-06
WP_002368159.1|771486_772557_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A288TXV8	Enterococcus_phage	49.0	7.6e-89
WP_002368160.1|772957_773479_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.3	3.9e-14
WP_002355798.1|773592_773793_+	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_002355799.1|773853_774213_+	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_002361360.1|774260_774611_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002368163.1|774708_775068_+	DUF1304 domain-containing protein	NA	NA	NA	NA	NA
WP_002361364.1|775195_775630_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002361365.1|775647_776163_+	GrpB family protein	NA	A0A2K5B2B6	Erysipelothrix_phage	48.8	7.7e-39
WP_002368165.1|776178_777354_-	SulP family inorganic anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	48.0	3.9e-86
>prophage 3
NZ_CP036249	Enterococcus faecalis R712 chromosome, complete genome	2944359	822924	860919	2944359	protease,integrase,portal,tail,terminase	Enterococcus_phage(58.97%)	58	817346:817362	850368:850384
817346:817362	attL	AAAATTCCTCCTAAAAA	NA	NA	NA	NA
WP_002355867.1|822924_823269_+|protease	ribosomal-processing cysteine protease Prp	protease	NA	NA	NA	NA
WP_002355868.1|823281_823569_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_002390381.1|823656_824811_-|integrase	site-specific integrase	integrase	Q9AZK8	Lactococcus_phage	36.1	2.8e-65
WP_002366325.1|824876_825344_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002364671.1|825385_825841_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_002363332.1|825876_826302_-	helix-turn-helix transcriptional regulator	NA	Q5YAA4	Bacillus_phage	49.3	7.8e-29
WP_002363333.1|826536_826737_+	helix-turn-helix transcriptional regulator	NA	A0A1S5SDM7	Streptococcus_phage	50.0	5.0e-10
WP_002363334.1|826749_827034_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002366327.1|827048_827771_+	phage regulatory protein	NA	D2IYT0	Enterococcus_phage	63.3	7.3e-43
WP_002364224.1|827804_827987_-	YegP family protein	NA	NA	NA	NA	NA
WP_002368198.1|828039_828234_+	hypothetical protein	NA	D2IYT3	Enterococcus_phage	75.4	1.4e-17
WP_002363338.1|828306_828714_+	hypothetical protein	NA	A0A097BY30	Enterococcus_phage	39.4	2.3e-17
WP_002368200.1|828726_829470_+	hypothetical protein	NA	U4KJ90	Streptococcus_phage	41.3	3.7e-42
WP_002368201.1|829542_829866_+	hypothetical protein	NA	D2IYT5	Enterococcus_phage	88.8	2.6e-45
WP_010707359.1|829865_829979_+	hypothetical protein	NA	C9E2M6	Enterococcus_phage	79.4	4.9e-07
WP_002368203.1|830045_830300_+	hypothetical protein	NA	A0A0S2MYD6	Enterococcus_phage	74.4	2.9e-23
WP_002368205.1|830283_830961_+	ERF family protein	NA	A0A0S2MYH3	Enterococcus_phage	92.9	2.5e-114
WP_002390931.1|830945_831884_+	DUF1351 domain-containing protein	NA	A0A0S2MYB3	Enterococcus_phage	65.8	5.8e-93
WP_002368210.1|831880_832561_+	hypothetical protein	NA	C9E2N1	Enterococcus_phage	77.0	2.1e-100
WP_002368212.1|832564_833371_+	helix-turn-helix domain-containing protein	NA	A0A2D1GQ66	Lysinibacillus_phage	52.1	7.1e-23
WP_002368214.1|833367_833670_+	hypothetical protein	NA	D2IZR3	Enterococcus_phage	99.0	1.6e-47
WP_002368215.1|833670_833970_+	hypothetical protein	NA	D2IZY1	Enterococcus_phage	91.9	6.0e-44
WP_010783303.1|833987_834413_+	RusA family crossover junction endodeoxyribonuclease	NA	D2IYU2	Enterococcus_phage	82.3	1.1e-59
WP_002368217.1|834412_834598_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002390933.1|834804_835560_+	SAM-dependent DNA methyltransferase	NA	A0A2K9V411	Faecalibacterium_phage	34.2	9.6e-30
WP_002368221.1|835709_836060_+	hypothetical protein	NA	D2IYU9	Enterococcus_phage	88.9	1.7e-29
WP_002368222.1|836060_836339_+	hypothetical protein	NA	A0A0S2MYC7	Enterococcus_phage	84.8	3.0e-37
WP_002368223.1|836350_836563_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002368224.1|836565_837102_+	DUF1642 domain-containing protein	NA	D2IYV1	Enterococcus_phage	55.7	4.6e-42
WP_002366352.1|837622_838039_+	autolysin	NA	D2IZ85	Enterococcus_phage	97.8	5.4e-67
WP_002390186.1|838926_839094_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002366356.1|839096_840431_+	chromosome partitioning protein ParB	NA	D2IZZ5	Enterococcus_phage	81.8	8.6e-215
WP_002363360.1|840468_840660_+	hypothetical protein	NA	D2IZZ6	Enterococcus_phage	95.2	1.5e-24
WP_010783305.1|840796_840985_+	hypothetical protein	NA	D2IZZ7	Enterococcus_phage	90.3	7.4e-24
WP_002368225.1|841004_841745_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002366360.1|841791_842649_+|terminase	small subunit of terminase	terminase	D2J000	Enterococcus_phage	72.2	5.2e-88
WP_002390185.1|842626_843919_+|terminase	PBSX family phage terminase large subunit	terminase	V5UQR5	Oenococcus_phage	69.1	4.6e-173
WP_002366362.1|843918_845403_+|portal	phage portal protein	portal	A0A097QPZ5	Enterococcus_phage	99.2	1.1e-138
WP_002366363.1|845395_846322_+	hypothetical protein	NA	A0A097QPZ9	Enterococcus_phage	94.3	1.2e-127
WP_002366364.1|846426_847080_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002366365.1|847093_847990_+	hypothetical protein	NA	U3PDP8	Lactobacillus_phage	50.8	3.5e-71
WP_002366366.1|848060_848393_+	hypothetical protein	NA	A0A1W6JNH7	Staphylococcus_phage	40.6	1.8e-09
WP_002366368.1|848389_848665_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002363372.1|848661_849000_+	hypothetical protein	NA	A0A1L2K255	Streptococcus_phage	38.7	1.8e-12
WP_002363373.1|848996_849389_+	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
WP_002364302.1|849407_850013_+|tail	phage major tail protein, TP901-1 family	tail	NA	NA	NA	NA
WP_002366369.1|850015_850324_+	hypothetical protein	NA	L0P8M2	Lactobacillus_phage	77.1	2.7e-07
WP_002366370.1|850386_850785_+	hypothetical protein	NA	NA	NA	NA	NA
850368:850384	attR	TTTTTAGGAGGAATTTT	NA	NA	NA	NA
WP_002366371.1|850853_851159_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002368227.1|851145_855600_+|tail	phage tail tape measure protein	tail	M1PKM6	Streptococcus_phage	47.9	8.6e-86
WP_002366374.1|855596_856319_+	hypothetical protein	NA	C5IUK4	Streptococcus_phage	38.8	3.6e-42
WP_002366375.1|856318_857764_+	peptidase M23	NA	A0A1X9IGI5	Lactococcus_phage	39.2	9.0e-77
WP_002366376.1|857769_858510_+	hypothetical protein	NA	A0A1X9IGH6	Lactococcus_phage	35.0	2.1e-29
WP_002390183.1|858527_859007_+	hypothetical protein	NA	Q1RNC2	Lactococcus_phage	31.7	5.6e-07
WP_010717882.1|859020_859416_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002368228.1|859417_859540_+	XkdX family protein	NA	NA	NA	NA	NA
WP_002364623.1|859550_859760_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002390181.1|859812_860919_+	N-acetylmuramoyl-L-alanine amidase	NA	V5URN7	Enterococcus_phage	50.8	2.9e-91
>prophage 4
NZ_CP036249	Enterococcus faecalis R712 chromosome, complete genome	2944359	957089	977506	2944359	transposase,integrase	Bacillus_phage(25.0%)	16	952409:952462	973660:973713
952409:952462	attL	ACTCAAAATCCAGTTCCTTCACGGGAGTGCCGGTTCGACCCCGGCCGCCGGTAT	NA	NA	NA	NA
WP_099434270.1|957089_958495_-|transposase	IS3 family transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	46.4	1.5e-28
WP_002389746.1|958591_958834_+|integrase	tyrosine-type recombinase/integrase	integrase	H0UST3	Bacillus_phage	36.4	2.4e-06
WP_002389745.1|958867_959215_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1B2AQ00	Phage_Wrath	40.2	1.0e-10
WP_002389744.1|959486_960185_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002389743.1|960159_961122_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002369704.1|961206_963309_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_002369703.1|963287_965009_+	ATP-dependent helicase	NA	A0A068EQC7	Bacillus_phage	23.5	5.6e-17
WP_002369702.1|965304_967137_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002369701.1|967136_967859_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002389742.1|967851_969126_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002369699.1|969126_969870_+	hydrolase	NA	NA	NA	NA	NA
WP_002369697.1|970075_972151_+	RecQ family ATP-dependent DNA helicase	NA	A0A2K9L3P7	Tupanvirus	36.2	2.0e-45
WP_002369696.1|972140_973415_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002369695.1|973872_974328_-|transposase	IS200/IS605 family transposase	transposase	A0A0H3UZM0	Geobacillus_virus	35.0	1.8e-15
973660:973713	attR	ACTCAAAATCCAGTTCCTTCACGGGAGTGCCGGTTCGACCCCGGCCGCCGGTAT	NA	NA	NA	NA
WP_002369693.1|974397_976125_-|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	46.2	9.6e-126
WP_002369691.1|976285_977506_-|transposase	IS110 family transposase	transposase	A0A1X9I619	Streptococcus_phage	39.1	6.9e-70
>prophage 5
NZ_CP036249	Enterococcus faecalis R712 chromosome, complete genome	2944359	1208102	1225873	2944359	tail,holin	Enterococcus_phage(42.86%)	20	NA	NA
WP_002357859.1|1208102_1210499_+	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	24.1	1.7e-19
WP_002360497.1|1210523_1210874_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_002357857.1|1211246_1211720_-	toxin	NA	A0A097BY56	Enterococcus_phage	71.2	1.1e-60
WP_002357856.1|1211766_1212249_-	helix-turn-helix transcriptional regulator	NA	R9QTP6	Staphylococcus_phage	48.6	1.2e-20
WP_002369529.1|1212417_1212600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002369528.1|1212630_1213401_+	DnaD domain protein	NA	A0A0K0MX39	Streptococcus_phage	57.0	2.5e-33
WP_002369527.1|1213419_1214262_+	ATP-binding protein	NA	A0A0P0I3L9	Lactobacillus_phage	30.7	4.8e-30
WP_010706586.1|1214264_1214357_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002388056.1|1214349_1214721_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002360491.1|1214740_1215148_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_002381949.1|1215392_1215785_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002369526.1|1215797_1216310_+|tail	phage major tail protein, TP901-1 family	tail	W6LP72	Streptococcus_phage	49.4	8.8e-35
WP_002357848.1|1216342_1216702_+	hypothetical protein	NA	A0A0F6N4J9	Staphylococcus_phage	32.2	7.6e-09
WP_002361692.1|1216719_1217088_+	hypothetical protein	NA	A0A1P8BLR3	Lactococcus_phage	33.3	1.3e-08
WP_002390144.1|1217077_1220011_+	hypothetical protein	NA	W8EBC4	Geobacillus_phage	41.2	6.9e-15
WP_002365553.1|1220012_1220939_+|tail	phage tail family protein	tail	C9E2K5	Enterococcus_phage	78.6	9.0e-147
WP_002369523.1|1220951_1222409_+	hypothetical protein	NA	C9E2K6	Enterococcus_phage	47.4	1.4e-173
WP_002369522.1|1222441_1224211_+	hypothetical protein	NA	A0A097BYA8	Enterococcus_phage	71.8	7.5e-142
WP_002357842.1|1224234_1224630_+|holin	phage holin family protein	holin	F0PIJ6	Enterococcus_phage	48.9	2.8e-33
WP_079995065.1|1224775_1225873_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A139ZVY1	Enterococcus_phage	44.6	1.2e-76
>prophage 6
NZ_CP036249	Enterococcus faecalis R712 chromosome, complete genome	2944359	1357275	1399696	2944359	head,terminase,tail,plate	Listeria_phage(51.35%)	65	NA	NA
WP_002390527.1|1357275_1357872_-	hypothetical protein	NA	A0A059T7Z1	Listeria_phage	35.8	1.5e-30
WP_002390528.1|1357899_1358364_-	ImmA/IrrE family metallo-endopeptidase	NA	R4IBK9	Listeria_phage	36.6	3.2e-20
WP_002377599.1|1358380_1358689_-	helix-turn-helix transcriptional regulator	NA	A0A1W6JQ26	Staphylococcus_phage	36.3	8.5e-09
WP_002377598.1|1358831_1359101_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002377597.1|1359079_1359226_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010717314.1|1359288_1359849_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002390751.1|1359829_1360060_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002386712.1|1360071_1360242_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002377591.1|1360238_1360454_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002390531.1|1360509_1360800_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010717315.1|1360804_1362919_+	AAA family ATPase	NA	A0A1L2K2K3	Aeribacillus_phage	26.1	1.8e-49
WP_002390534.1|1362919_1364089_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002390536.1|1364088_1364790_+	MBL fold metallo-hydrolase	NA	A0A1L2JY21	Aeribacillus_phage	42.7	6.0e-50
WP_002386717.1|1364801_1365566_+	DnaD domain protein	NA	A0A1B0Y2R2	Lactobacillus_phage	61.4	7.5e-14
WP_075575573.1|1365578_1366079_+	recombinase RecU	NA	A0A1L2JY30	Aeribacillus_phage	35.4	8.4e-14
WP_002390537.1|1366099_1366414_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002390538.1|1366497_1367247_+	hypothetical protein	NA	D2IZY3	Enterococcus_phage	84.1	6.7e-116
WP_002390542.1|1367271_1367499_+	hypothetical protein	NA	C9E2N4	Enterococcus_phage	92.0	6.2e-33
WP_002390543.1|1367519_1367747_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010717316.1|1367752_1368157_+	hypothetical protein	NA	A0A097BY34	Enterococcus_phage	54.4	4.2e-32
WP_002390547.1|1368157_1368496_+	hypothetical protein	NA	A8E2L3	Enterococcus_phage	75.0	2.9e-26
WP_002390548.1|1368492_1368846_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002390551.1|1369002_1369617_+	DUF3850 domain-containing protein	NA	C9E2N9	Enterococcus_phage	51.4	5.0e-45
WP_002390554.1|1369630_1369948_+	replicase	NA	NA	NA	NA	NA
WP_002390555.1|1369941_1370148_+	hypothetical protein	NA	D2IZL5	Enterococcus_phage	84.8	4.6e-27
WP_002377565.1|1370148_1370328_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011109490.1|1370342_1370453_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010706619.1|1370468_1370648_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002390556.1|1370748_1371333_+	positive control factor	NA	NA	NA	NA	NA
WP_002390559.1|1371978_1372698_+	oxidoreductase	NA	C9E2M3	Enterococcus_phage	65.3	9.3e-83
WP_002390561.1|1372713_1373217_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002390562.1|1373341_1374133_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002390565.1|1374184_1374910_+|terminase	terminase small subunit	terminase	NA	NA	NA	NA
WP_002390568.1|1374890_1376327_+|terminase	phage terminase large subunit	terminase	A5GYP8	Lactococcus_phage	72.1	2.4e-199
WP_002390569.1|1376349_1377744_+	DUF1073 domain-containing protein	NA	A8ATG1	Listeria_phage	56.6	1.5e-145
WP_002390570.1|1377733_1378978_+	hypothetical protein	NA	A8ATG2	Listeria_phage	42.7	4.9e-55
WP_002390571.1|1378970_1379135_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002390572.1|1379189_1379477_+	hypothetical protein	NA	A0A0S2MYE7	Enterococcus_phage	68.3	2.2e-27
WP_002386749.1|1379469_1379679_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_002390574.1|1379691_1380792_+	DUF2213 domain-containing protein	NA	A8ATG4	Listeria_phage	58.9	1.5e-87
WP_002390575.1|1380794_1381265_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002390577.1|1381286_1382168_+	DUF2184 domain-containing protein	NA	A8ATG6	Listeria_phage	51.8	3.9e-83
WP_002390578.1|1382182_1382569_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002377536.1|1382580_1382922_+	DUF4054 domain-containing protein	NA	NA	NA	NA	NA
WP_079995052.1|1382918_1383524_+	hypothetical protein	NA	A8ATG9	Listeria_phage	43.1	6.1e-35
WP_002390583.1|1383523_1383883_+	hypothetical protein	NA	A0A2H4JDP3	uncultured_Caudovirales_phage	43.7	2.3e-13
WP_002390585.1|1383869_1384346_+	hypothetical protein	NA	A8ATH1	Listeria_phage	42.1	9.4e-23
WP_002390587.1|1384342_1385380_+	DUF3383 family protein	NA	A8ATH2	Listeria_phage	56.4	6.4e-101
WP_002377526.1|1385395_1385794_+	hypothetical protein	NA	A8ATH3	Listeria_phage	54.0	6.6e-30
WP_002386763.1|1385846_1386179_+	hypothetical protein	NA	A8ATH4	Listeria_phage	56.9	1.8e-25
WP_002377522.1|1386159_1386360_+	hypothetical protein	NA	A8ATH5	Listeria_phage	62.1	6.9e-12
WP_002390589.1|1386362_1391531_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A8ATH6	Listeria_phage	35.3	1.3e-149
WP_002386767.1|1391530_1392088_+	LysM peptidoglycan-binding domain-containing protein	NA	A8ATH7	Listeria_phage	43.2	2.8e-34
WP_002390591.1|1392097_1392460_+	hypothetical protein	NA	A8ATH8	Listeria_phage	45.8	1.1e-28
WP_002390593.1|1392460_1393291_+	hypothetical protein	NA	A8ATH9	Listeria_phage	45.8	7.8e-65
WP_002377515.1|1393290_1393623_+	hypothetical protein	NA	A8ATI0	Listeria_phage	50.0	1.6e-21
WP_002390594.1|1393622_1393970_+	DUF2634 domain-containing protein	NA	A0A2H4J4S8	uncultured_Caudovirales_phage	49.4	2.9e-13
WP_002390596.1|1393962_1395117_+|plate	baseplate J/gp47 family protein	plate	A8ATI2	Listeria_phage	54.1	1.3e-113
WP_002390597.1|1395100_1395730_+	hypothetical protein	NA	A8ATI3	Listeria_phage	57.4	3.1e-58
WP_010774208.1|1395748_1397392_+|head,tail	phage head-tail adapter protein	head,tail	D2J018	Enterococcus_phage	66.7	7.5e-112
WP_002390600.1|1397413_1397848_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002377507.1|1397847_1397976_+	XkdX family protein	NA	NA	NA	NA	NA
WP_002377506.1|1397980_1398337_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002390601.1|1398333_1398531_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002390604.1|1398589_1399696_+	N-acetylmuramoyl-L-alanine amidase	NA	V5URN7	Enterococcus_phage	48.0	6.2e-86
>prophage 7
NZ_CP036249	Enterococcus faecalis R712 chromosome, complete genome	2944359	1684421	1693065	2944359		Synechococcus_phage(50.0%)	9	NA	NA
WP_002369276.1|1684421_1684994_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.1	4.1e-25
WP_002369275.1|1684990_1686022_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3FGG1	Synechococcus_phage	44.4	8.2e-56
WP_002382407.1|1686023_1687463_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	33.0	2.1e-49
WP_002369272.1|1687438_1689658_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.9	9.7e-147
WP_002369271.1|1689654_1690329_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_002357271.1|1690329_1690581_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_002369269.1|1690594_1691308_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3ELR0	Synechococcus_phage	43.0	5.7e-48
WP_002379523.1|1691459_1692584_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_002365766.1|1692576_1693065_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	42.0	6.4e-19
>prophage 8
NZ_CP036249	Enterococcus faecalis R712 chromosome, complete genome	2944359	1723232	1765154	2944359	protease,transposase,integrase	Clostridium_botulinum_C_phage(16.67%)	40	1763352:1763376	1768417:1768441
WP_002369252.1|1723232_1724087_-|protease	trypsin-like serine protease	protease	NA	NA	NA	NA
WP_002369251.1|1724135_1725668_-	M4 family metallopeptidase coccolysin	NA	NA	NA	NA	NA
WP_002390430.1|1725902_1727174_-	GHKL domain-containing protein	NA	NA	NA	NA	NA
WP_002369249.1|1727170_1727899_-	protein FsrB	NA	NA	NA	NA	NA
WP_011109506.1|1727987_1728719_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_002382428.1|1729137_1731096_-	amidase domain-containing protein	NA	Q332B8	Clostridium_botulinum_C_phage	37.4	1.4e-19
WP_079995071.1|1731177_1736778_-	DUF5110 domain-containing protein	NA	NA	NA	NA	NA
WP_010706477.1|1737308_1737695_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002357219.1|1737751_1738768_-	alcohol dehydrogenase AdhP	NA	A0A2K9L339	Tupanvirus	25.3	3.0e-26
WP_002369243.1|1739282_1740263_+	nickel pincer cofactor biosynthesis protein LarC	NA	NA	NA	NA	NA
WP_002357197.1|1740277_1740988_+	aquaporin family protein	NA	NA	NA	NA	NA
WP_002357196.1|1741191_1742034_-	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA	NA
WP_002357194.1|1742035_1742887_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_002357192.1|1742920_1743418_-	PTS mannose/fructose/sorbose transporter subunit IIB	NA	NA	NA	NA	NA
WP_002369242.1|1743432_1743864_-	PTS fructose transporter subunit IIA	NA	NA	NA	NA	NA
WP_002369241.1|1744444_1744732_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002369240.1|1744977_1745493_-	galactose-6-phosphate isomerase subunit LacB	NA	NA	NA	NA	NA
WP_002357188.1|1745518_1745947_-	galactose-6-phosphate isomerase subunit LacA	NA	NA	NA	NA	NA
WP_002357187.1|1746169_1746664_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_002357185.1|1746665_1746968_+	PTS fructose transporter subunit IIB	NA	NA	NA	NA	NA
WP_002357183.1|1747062_1748466_+	PTS glucitol transporter subunit IIA	NA	NA	NA	NA	NA
WP_002369238.1|1748506_1749259_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA	NA
WP_002369236.1|1749594_1750440_-	DUF4767 domain-containing protein	NA	NA	NA	NA	NA
WP_002369235.1|1750675_1751260_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_002369233.1|1751477_1752383_+	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_002360100.1|1752556_1752973_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002382439.1|1753887_1753989_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002297659.1|1754130_1755309_-|integrase	site-specific integrase	integrase	S6C485	Thermus_phage	30.5	3.4e-29
WP_002297662.1|1755411_1755723_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002360096.1|1756071_1756317_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002297668.1|1756310_1756712_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_002369229.1|1757279_1759115_-	beta-galactosidase	NA	NA	NA	NA	NA
WP_002330923.1|1759286_1760549_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_002360092.1|1760686_1760911_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002298159.1|1760907_1761072_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002298157.1|1761165_1762458_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	40.4	3.9e-31
WP_002313174.1|1762731_1762992_-	hypothetical protein	NA	NA	NA	NA	NA
1763352:1763376	attL	TTTCTATTTACACAAAATATTTTAC	NA	NA	NA	NA
WP_099704284.1|1763596_1764758_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	2.0e-79
WP_077497620.1|1764830_1765037_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	U5P429	Shigella_phage	53.3	2.0e-06
WP_002383094.1|1765040_1765154_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
1768417:1768441	attR	GTAAAATATTTTGTGTAAATAGAAA	NA	NA	NA	NA
>prophage 9
NZ_CP036249	Enterococcus faecalis R712 chromosome, complete genome	2944359	1781882	1793366	2944359	transposase	Streptococcus_phage(100.0%)	11	NA	NA
WP_002298830.1|1781882_1782887_-	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	66.3	1.4e-121
WP_002330911.1|1782883_1785007_-|transposase	transposase	transposase	A0A1S5SF30	Streptococcus_phage	58.7	6.2e-175
WP_002330910.1|1785011_1787459_-	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	76.4	0.0e+00
WP_002298826.1|1787445_1787835_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	66.7	2.5e-42
WP_002330909.1|1787898_1788627_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011109507.1|1788633_1789461_-	abortive infection family protein	NA	NA	NA	NA	NA
WP_002369218.1|1789534_1790038_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	60.6	1.2e-55
WP_002298822.1|1790050_1790272_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	87.7	4.5e-28
WP_002346915.1|1790668_1791919_+|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	62.1	6.1e-114
WP_002330905.1|1792050_1792185_-	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
WP_002360076.1|1792181_1793366_-	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	62.1	1.0e-142
>prophage 10
NZ_CP036249	Enterococcus faecalis R712 chromosome, complete genome	2944359	1991205	2032358	2944359	capsid,integrase,transposase,portal,holin,tail,terminase	Enterococcus_phage(91.67%)	52	1990933:1990959	2032433:2032459
1990933:1990959	attL	TCAGACACATGGCGGCACTTGCTTAGT	NA	NA	NA	NA
WP_002369085.1|1991205_1991787_+	DUF4950 domain-containing protein	NA	C9E2L5	Enterococcus_phage	100.0	4.2e-65
WP_000195429.1|1991993_1993166_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_002369084.1|1993501_1995004_+	membrane protein	NA	C9E2L4	Enterococcus_phage	98.0	8.6e-272
WP_002369083.1|1995067_1996360_-	peptidoglycan DD-metalloendopeptidase family protein	NA	C9E2L3	Enterococcus_phage	100.0	1.3e-252
WP_002369082.1|1996421_1996802_-	hypothetical protein	NA	C9E2L2	Enterococcus_phage	100.0	1.1e-63
WP_002369081.1|1996814_1998074_-	LysM peptidoglycan-binding domain-containing protein	NA	C9E2L1	Enterococcus_phage	94.5	5.6e-224
WP_002369080.1|1998078_1998282_-|holin	holin	holin	A0A0S2MYF6	Enterococcus_phage	100.0	2.6e-30
WP_099434214.1|1998278_1998506_-	hypothetical protein	NA	A0A0S2MYL7	Enterococcus_phage	98.6	1.3e-30
WP_024041692.1|1998567_2000526_-	hypothetical protein	NA	A0A097BYA8	Enterococcus_phage	82.5	3.6e-137
WP_002389851.1|2000711_2002730_-	phage minor structural protein	NA	A0A0S2MYF5	Enterococcus_phage	99.0	1.3e-307
WP_002369075.1|2002746_2003676_-|tail	tail protein	tail	A0A097BY64	Enterococcus_phage	99.4	3.7e-172
WP_002389852.1|2003676_2007084_-	tape measure protein	NA	A0A0S2MYN1	Enterococcus_phage	92.4	0.0e+00
WP_002369073.1|2007099_2007357_-	hypothetical protein	NA	A0A097BYA4	Enterococcus_phage	98.8	1.6e-40
WP_002389853.1|2007449_2007800_-	hypothetical protein	NA	A0A097BYB6	Enterococcus_phage	100.0	3.3e-57
WP_025186771.1|2007854_2008313_-	hypothetical protein	NA	A0A0S2MYH7	Enterococcus_phage	97.4	1.6e-75
WP_002369069.1|2008390_2008921_-|tail	phage major tail protein, TP901-1 family	tail	A0A097BY59	Enterococcus_phage	98.3	1.4e-91
WP_002369068.1|2008936_2009326_-	hypothetical protein	NA	A0A0S2MYG3	Enterococcus_phage	99.2	8.6e-67
WP_002369067.1|2009322_2009703_-	hypothetical protein	NA	A0A0S2MYE9	Enterococcus_phage	98.4	7.9e-65
WP_002369066.1|2009677_2010013_-	hypothetical protein	NA	A0A097BYB2	Enterococcus_phage	95.5	2.9e-55
WP_002369063.1|2010009_2010342_-	hypothetical protein	NA	A0A097BY55	Enterococcus_phage	99.1	2.1e-53
WP_002369062.1|2010415_2011348_-|capsid	phage major capsid protein	capsid	A0A1B1V000	Enterococcus_phage	99.4	9.7e-173
WP_002369061.1|2011360_2011960_-	DUF4355 domain-containing protein	NA	A0A097BY91	Enterococcus_phage	97.0	1.5e-73
WP_025186770.1|2012082_2012346_-	hypothetical protein	NA	A0A0S2MYE7	Enterococcus_phage	98.9	1.2e-43
WP_002369058.1|2012440_2012710_-	hypothetical protein	NA	A0A0S2MYD1	Enterococcus_phage	97.8	2.1e-43
WP_002369057.1|2012710_2013649_-	hypothetical protein	NA	A0A097BY50	Enterococcus_phage	99.4	3.1e-171
WP_002369056.1|2013653_2015192_-|portal	phage portal protein	portal	A0A097BY86	Enterococcus_phage	98.0	1.1e-282
WP_002389854.1|2015209_2016529_-|terminase	PBSX family phage terminase large subunit	terminase	D2J001	Enterococcus_phage	91.6	1.4e-230
WP_002369054.1|2016500_2017304_-|terminase	small subunit of terminase	terminase	D2J000	Enterococcus_phage	91.8	1.3e-125
WP_002369053.1|2017490_2018054_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002389855.1|2018494_2019118_-	hypothetical protein	NA	A0A090DC14	Clostridium_phage	31.7	4.2e-15
WP_002389856.1|2019101_2020016_-	DUF4868 domain-containing protein	NA	Q24LC1	Clostridium_phage	30.7	2.8e-31
WP_002369049.1|2020390_2020807_-	autolysin	NA	D2IZL7	Enterococcus_phage	96.4	3.5e-66
WP_002389926.1|2021174_2021435_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002389931.1|2022121_2023072_-	hypothetical protein	NA	C9E2N2	Enterococcus_phage	51.6	2.7e-69
WP_002369045.1|2023072_2023753_-	hypothetical protein	NA	C9E2N1	Enterococcus_phage	98.7	4.9e-126
WP_002389933.1|2023749_2024688_-	DUF1351 domain-containing protein	NA	C9E2N0	Enterococcus_phage	74.6	3.9e-97
WP_002369043.1|2024672_2025350_-	ERF family protein	NA	A0A0S2MYH3	Enterococcus_phage	93.8	9.6e-114
WP_002369042.1|2025342_2025588_-	hypothetical protein	NA	A0A0S2MYD6	Enterococcus_phage	92.3	5.7e-32
WP_024041688.1|2025800_2025911_-	hypothetical protein	NA	C9E2M6	Enterococcus_phage	94.1	3.9e-09
WP_002369040.1|2025907_2026081_-	hypothetical protein	NA	C9E2M5	Enterococcus_phage	100.0	2.3e-24
WP_002369038.1|2026092_2026278_-	hypothetical protein	NA	D2IZW5	Enterococcus_phage	86.7	1.9e-19
WP_002369036.1|2026459_2026951_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002369035.1|2026937_2027171_-	hypothetical protein	NA	A0A182BQC3	Lactococcus_phage	42.9	1.2e-07
WP_002369034.1|2027184_2027481_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002369033.1|2027482_2028238_-	Rha family transcriptional regulator	NA	D2IYT0	Enterococcus_phage	54.5	2.4e-44
WP_002369032.1|2028257_2028509_-	hypothetical protein	NA	A0A0S2MYC6	Enterococcus_phage	93.8	4.4e-40
WP_002369031.1|2028547_2028811_-	helix-turn-helix transcriptional regulator	NA	A0A097BY21	Enterococcus_phage	98.9	1.6e-40
WP_002369030.1|2028949_2029474_+	helix-turn-helix domain-containing protein	NA	A0A097BY22	Enterococcus_phage	94.3	1.9e-85
WP_002389937.1|2029448_2029964_+	hypothetical protein	NA	A0A0S2MYA6	Enterococcus_phage	98.1	1.6e-84
WP_002369027.1|2030053_2030938_+	hypothetical protein	NA	A0A097BY58	Enterococcus_phage	96.5	3.1e-128
WP_002389940.1|2030953_2031154_+	hypothetical protein	NA	A0A097BY73	Enterococcus_phage	100.0	1.6e-29
WP_002369025.1|2031221_2032358_+|integrase	site-specific integrase	integrase	A0A0S2MYI6	Enterococcus_phage	98.7	2.7e-209
2032433:2032459	attR	TCAGACACATGGCGGCACTTGCTTAGT	NA	NA	NA	NA
>prophage 11
NZ_CP036249	Enterococcus faecalis R712 chromosome, complete genome	2944359	2439972	2449712	2944359		Streptococcus_phage(57.14%)	11	NA	NA
WP_002389787.1|2439972_2442156_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	66.6	1.2e-285
WP_002368804.1|2442188_2442785_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A0C5K925	Enterococcus_phage	56.9	7.1e-52
WP_002362328.1|2442829_2443948_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_002356377.1|2444073_2444832_-	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA	NA
WP_002368803.1|2444815_2445478_-	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	31.6	2.3e-19
WP_002368802.1|2445492_2446365_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	57.2	1.1e-80
WP_002368801.1|2446476_2446824_-	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	37.6	2.1e-16
WP_002356371.1|2446816_2447656_-	stage 0 sporulation family protein	NA	NA	NA	NA	NA
WP_002389791.1|2447772_2448723_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	33.0	6.2e-34
WP_002356367.1|2448724_2449054_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002356366.1|2449073_2449712_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	53.8	2.1e-54
>prophage 12
NZ_CP036249	Enterococcus faecalis R712 chromosome, complete genome	2944359	2528385	2548594	2944359	integrase	Streptococcus_phage(90.0%)	24	2534440:2534455	2556457:2556472
WP_079995048.1|2528385_2529438_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.9	5.3e-26
WP_000420681.1|2529922_2530237_+	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	97.1	3.7e-52
WP_000985040.1|2530252_2530639_+	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	89.0	2.5e-58
WP_002368310.1|2530678_2532073_+	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	90.9	6.8e-247
WP_002390709.1|2532075_2532231_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002390710.1|2532278_2533454_+	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	96.2	1.9e-218
WP_001009056.1|2533496_2533718_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
WP_002368312.1|2533834_2534332_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	94.5	9.6e-87
WP_025186755.1|2534345_2534738_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	99.2	1.2e-68
2534440:2534455	attL	CGCAAATGACGTGGTT	NA	NA	NA	NA
WP_002368314.1|2534721_2537169_+	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	97.8	0.0e+00
WP_002368316.1|2537171_2539349_+	hypothetical protein	NA	A0A1S5SF30	Streptococcus_phage	93.0	0.0e+00
WP_000769868.1|2539345_2540347_+	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
WP_001224320.1|2540343_2541279_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.0	7.7e-170
WP_011058339.1|2541553_2541640_+	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_000691736.1|2541655_2543575_+	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	99.5	0.0e+00
WP_011058338.1|2543675_2543861_+	conjugal transfer protein	NA	D0R0F6	Streptococcus_phage	67.9	3.9e-17
WP_001227347.1|2543920_2544274_-	helix-turn-helix transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
WP_013670292.1|2544478_2544550_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000804885.1|2544778_2545201_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
WP_000857133.1|2545197_2545428_+	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
WP_001845478.1|2545653_2545905_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000814511.1|2545888_2546092_+	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
WP_002368319.1|2546173_2547391_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5SEW7	Streptococcus_phage	99.3	2.0e-231
WP_002355141.1|2547655_2548594_-	glycosyltransferase family 2 protein	NA	V5USA4	Oenococcus_phage	50.5	1.4e-78
2556457:2556472	attR	CGCAAATGACGTGGTT	NA	NA	NA	NA
>prophage 1
NZ_CP036247	Enterococcus faecalis R712 plasmid pR712_01, complete sequence	75109	0	60708	75109	transposase,holin	Streptococcus_phage(32.0%)	66	NA	NA
WP_002369773.1|1168_1417_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002369771.1|1519_1786_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA	NA
WP_002360769.1|1778_2054_+	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA	NA
WP_002365983.1|2857_3043_+	hypothetical protein	NA	NA	NA	NA	NA
WP_079995061.1|3045_3219_+	PcfM protein	NA	NA	NA	NA	NA
WP_002360842.1|3242_3833_+	hypothetical protein	NA	A0A1B0XUG6	Freshwater_phage	38.8	2.1e-08
WP_002390215.1|3937_4717_+	hypothetical protein	NA	A8ATL9	Listeria_phage	45.2	1.3e-16
WP_002417363.1|4716_6060_+	hypothetical protein	NA	A8ATM0	Listeria_phage	42.8	2.0e-102
WP_002390334.1|6750_7362_+	hypothetical protein	NA	B5SP25	Lactococcus_phage	56.2	7.5e-57
WP_002390336.1|7689_8100_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002360759.1|8185_8524_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002369765.1|8738_9398_+	DUF2786 domain-containing protein	NA	A0A172JHR5	Bacillus_phage	30.7	1.9e-13
WP_002375302.1|9447_9630_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002390338.1|9840_10533_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002369763.1|10685_12452_+	glycoside hydrolase family protein	NA	A0A1U9WRD0	Streptococcus_virus	45.3	3.6e-27
WP_002375300.1|12636_13272_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002390339.1|13258_13726_+|holin	holin	holin	A0A097QQ04	Enterococcus_phage	62.4	2.7e-30
WP_002369761.1|13728_14256_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002360863.1|14298_16479_+	DUF1906 domain-containing protein	NA	NA	NA	NA	NA
WP_002369760.1|16586_17129_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002369759.1|17195_17771_+	YcxB family protein	NA	NA	NA	NA	NA
WP_002367719.1|18044_19364_+|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
WP_079995077.1|21345_22221_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002367777.1|23324_23738_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002367775.1|24107_26609_+	DEAD/DEAH box helicase	NA	NA	NA	NA	NA
WP_002367774.1|26642_26987_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000875953.1|26976_27246_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A1S5SCV8	Streptococcus_phage	46.5	4.3e-17
WP_002367772.1|27478_29410_-	PTS beta-glucoside transporter subunit IIBCA	NA	NA	NA	NA	NA
WP_002367771.1|29600_31040_+	sucrose-6-phosphate hydrolase	NA	S6ATV4	Bacillus_phage	22.6	1.6e-09
WP_002367770.1|31041_32004_+	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	27.3	3.0e-20
WP_000241511.1|32068_32431_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA	NA
WP_000245205.1|32424_32688_-	PbsX family transcriptional regulator	NA	NA	NA	NA	NA
WP_000588503.1|32836_33094_-	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_000388479.1|33086_33356_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_001120991.1|33486_33666_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002326819.1|34046_34742_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002354485.1|34797_35484_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
WP_000312841.1|36014_36302_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000629052.1|36291_36621_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000754864.1|36925_37255_+	helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	44.6	2.6e-16
WP_000516404.1|37541_38027_-	glycopeptide resistance protein VanZ-A	NA	NA	NA	NA	NA
WP_000732308.1|38179_39091_-	VanY-A/VanY-F/VanY-M family D-Ala-D-Ala carboxypeptidase	NA	NA	NA	NA	NA
WP_000402348.1|39518_40127_-	D-Ala-D-Ala dipeptidase VanX-A	NA	NA	NA	NA	NA
WP_001079843.1|40132_41164_-	D-alanine--(R)-lactate ligase VanA	NA	NA	NA	NA	NA
WP_001059542.1|41156_42125_-	D-lactate dehydrogenase VanH-A	NA	M1HUW8	Acanthocystis_turfacea_Chlorella_virus	33.1	3.5e-40
WP_000122610.1|42456_43749_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	38.9	3.2e-57
WP_002305818.1|43846_45001_-	VanA-type vancomycin resistance histidine kinase VanS	NA	W8CYF6	Bacillus_phage	23.3	1.5e-13
WP_001280781.1|44978_45674_-	VanA-type vancomycin resistance DNA-binding response regulator VanR	NA	W8CYM9	Bacillus_phage	37.7	4.9e-36
WP_001226076.1|45887_46463_-	recombinase family protein	NA	A0A1V0E035	Clostridioides_phage	34.8	9.0e-20
WP_002354485.1|48245_48932_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
WP_002370256.1|49424_50021_+	recombinase family protein	NA	A0A1J1J8Z4	Escherichia_phage	36.6	7.1e-20
WP_002358267.1|50037_50325_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002358271.1|50318_50543_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002390466.1|50611_50812_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002360675.1|50832_51135_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001240982.1|51499_54418_-|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	36.1	1.1e-169
WP_000576156.1|54421_54976_-	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	52.1	2.3e-36
WP_000085855.1|55194_55326_-	hypothetical protein	NA	E4ZFP9	Streptococcus_phage	90.7	8.2e-14
WP_001038790.1|55330_56068_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.6	1.4e-134
WP_001865637.1|56192_56276_-	23S rRNA methyltransferase attenuator leader peptide ErmL	NA	NA	NA	NA	NA
WP_002370254.1|56834_58163_+	Y-family DNA polymerase	NA	Q6DMX4	Streptococcus_phage	42.4	3.7e-93
WP_002360672.1|58159_58510_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002360667.1|58760_58871_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA	NA
WP_002369784.1|59109_59406_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002369783.1|59525_59801_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002366009.1|59778_60708_-	ParA family protein	NA	F0PIG8	Enterococcus_phage	25.6	2.6e-16
>prophage 2
NZ_CP036247	Enterococcus faecalis R712 plasmid pR712_01, complete sequence	75109	63824	68188	75109	transposase	Staphylococcus_phage(75.0%)	4	NA	NA
WP_000195429.1|63824_64997_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_000393259.1|65053_65446_+	GNAT family N-acetyltransferase	NA	A0A0N7GFH7	Staphylococcus_phage	100.0	6.9e-72
WP_001028144.1|65446_66886_+	aminoglycoside O-phosphotransferase APH(2'')-Ia	NA	A0A1X9I6C2	Streptococcus_phage	100.0	3.8e-285
WP_000195429.1|67015_68188_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
>prophage 1
NZ_CP036248	Enterococcus faecalis R712 plasmid pR712_02, complete sequence	97950	1815	54550	97950	holin,transposase	Streptococcus_phage(46.15%)	57	NA	NA
WP_000576156.1|1815_2370_-	recombinase family protein	NA	A0A0F7LA37	Escherichia_phage	52.1	2.3e-36
WP_000085855.1|2588_2720_-	hypothetical protein	NA	E4ZFP9	Streptococcus_phage	90.7	8.2e-14
WP_001038790.1|2724_3462_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.6	1.4e-134
WP_001814874.1|3586_3670_-	23S rRNA methyltransferase attenuation leader peptide	NA	NA	NA	NA	NA
WP_001096887.1|4210_5005_-	aminoglycoside O-phosphotransferase APH(3')-IIIa	NA	E4ZFP6	Streptococcus_phage	100.0	2.3e-154
WP_001255866.1|5574_6483_-	aminoglycoside nucleotidyltransferase ANT(6)-Ia	NA	E4ZFP8	Streptococcus_phage	100.0	2.8e-177
WP_000662263.1|6515_7250_-	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	100.0	1.5e-141
WP_000233000.1|7230_8100_-	hypothetical protein	NA	A0A1X9I6C9	Streptococcus_phage	90.7	6.7e-152
WP_000205227.1|8114_8339_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002390960.1|8481_10026_-	recombinase family protein	NA	A0A2K5B2B4	Erysipelothrix_phage	88.7	1.8e-256
WP_000323438.1|10045_10462_-	recombinase	NA	A0A2K5B2B3	Erysipelothrix_phage	98.6	1.2e-71
WP_002360685.1|10462_10759_-	hypothetical protein	NA	A0A2K5B2B2	Erysipelothrix_phage	91.8	4.6e-44
WP_000238804.1|11151_11757_-	helix-turn-helix domain-containing protein	NA	A0A219YA40	Aeromonas_phage	33.7	3.6e-19
WP_000653331.1|11887_14860_+|transposase	Tn3 family transposase	transposase	A0A125RQ78	Bacillus_phage	36.4	3.6e-197
WP_001062586.1|15902_16505_-	recombinase family protein	NA	A0A219YA40	Aeromonas_phage	38.3	5.7e-17
WP_002354485.1|17005_17692_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
WP_000222577.1|17819_18779_+|transposase	IS30-like element IS1252 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.1	2.4e-33
WP_000170424.1|19211_19784_-	recombinase family protein	NA	A0A1J1J8Z4	Escherichia_phage	46.0	6.8e-36
WP_000599739.1|19799_20405_-	cell filamentation protein	NA	NA	NA	NA	NA
WP_000958277.1|20634_20865_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001278770.1|20864_21206_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A1S5SEX8	Streptococcus_phage	41.7	4.2e-17
WP_001053446.1|21317_22256_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000892301.1|22502_23105_+	cell division protein Fic	NA	NA	NA	NA	NA
WP_000246197.1|23817_24084_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	NA	NA	NA	NA
WP_002402695.1|24076_24352_+	type II toxin-antitoxin system YafQ family toxin	NA	NA	NA	NA	NA
WP_000606299.1|25230_25557_-	hypothetical protein	NA	NA	NA	NA	NA
WP_052774627.1|25757_28505_-	BspA family leucine-rich repeat surface protein	NA	NA	NA	NA	NA
WP_001808798.1|28627_28837_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000758948.1|28836_29217_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_000758651.1|29219_30248_-	DUF916 and DUF3324 domain-containing protein	NA	NA	NA	NA	NA
WP_000836322.1|30624_31329_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001186973.1|31808_32738_-	CHAP domain-containing protein	NA	S5M633	Brevibacillus_phage	41.9	3.2e-19
WP_001015293.1|32778_33459_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	89.8	3.6e-116
WP_002379942.1|33736_34423_-|transposase	IS6-like element ISEnfa1 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	88.5	4.8e-113
WP_001808810.1|34455_34620_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000384569.1|34785_34983_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002390459.1|34972_35587_+	helix-turn-helix transcriptional regulator	NA	A0A139ZPI6	Marinitoga_camini_virus	46.8	1.2e-06
WP_000384541.1|35769_36687_+	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	43.6	1.6e-42
WP_000933358.1|36679_37429_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_000242080.1|37428_38259_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_002379942.1|38455_39142_-|transposase	IS6-like element ISEnfa1 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	88.5	4.8e-113
WP_002415860.1|39282_40104_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002367774.1|40137_40482_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000875953.1|40471_40741_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A1S5SCV8	Streptococcus_phage	46.5	4.3e-17
WP_002367772.1|40973_42905_-	PTS beta-glucoside transporter subunit IIBCA	NA	NA	NA	NA	NA
WP_002390192.1|43095_44535_+	sucrose-6-phosphate hydrolase	NA	S6ATV4	Bacillus_phage	22.6	1.6e-09
WP_002367770.1|44536_45499_+	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	27.3	3.0e-20
WP_000241511.1|45563_45926_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA	NA
WP_000245205.1|45919_46183_-	PbsX family transcriptional regulator	NA	NA	NA	NA	NA
WP_000411487.1|46680_47337_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000406546.1|48587_49229_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002383787.1|49610_50924_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000865436.1|51047_51911_-	DNA/RNA non-specific endonuclease	NA	NA	NA	NA	NA
WP_001209505.1|51900_52344_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002383786.1|52557_53493_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001031355.1|53634_53832_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002365924.1|54307_54550_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
