The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP045931	Streptococcus pneumoniae strain AUSMDU00010538 chromosome, complete genome	2090792	22636	31474	2090792	integrase	Streptococcus_phage(75.0%)	14	24696:24711	30949:30964
WP_000205044.1|22636_23923_+	adenylosuccinate synthase	NA	L7Y4J5	Megavirus	37.1	2.7e-72
WP_000291870.1|24123_24591_+	nucleoside deaminase	NA	NA	NA	NA	NA
24696:24711	attL	TTGTGTGCTCTTTTTT	NA	NA	NA	NA
WP_001106362.1|24799_25498_-|integrase	site-specific integrase	integrase	A0A1S5SDQ9	Streptococcus_phage	100.0	6.0e-127
WP_001814135.1|25587_25941_-	hypothetical protein	NA	U4KJ82	Streptococcus_phage	97.3	4.5e-54
WP_000401841.1|25995_27066_-	endonuclease	NA	A0A1S5SAB0	Streptococcus_phage	97.8	2.9e-181
WP_000170931.1|27082_27463_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A1S5SBG5	Streptococcus_phage	98.4	1.7e-67
WP_000285962.1|27475_27739_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A1S5S8E8	Streptococcus_phage	100.0	1.2e-43
WP_000156419.1|27738_27972_-	hypothetical protein	NA	A0A1S5S8D5	Streptococcus_phage	96.1	8.9e-35
WP_000464160.1|27971_28340_-	helix-turn-helix transcriptional regulator	NA	A0A1S5SBE7	Streptococcus_phage	100.0	1.4e-63
WP_001112859.1|28911_29103_+	DNA-binding protein	NA	A0A141DZR9	Streptococcus_phage	100.0	3.0e-28
WP_001247549.1|29125_29329_+	hypothetical protein	NA	A0A141E1R6	Streptococcus_phage	95.5	1.3e-29
WP_000024181.1|29483_29651_-	YjzC family protein	NA	NA	NA	NA	NA
WP_001209433.1|30255_30435_-	hypothetical protein	NA	Q3BLW4	Phage_SK137	96.6	3.5e-23
WP_000701992.1|31030_31474_+	dUTP diphosphatase	NA	Q2WG49	Clostridium_botulinum_D_phage	47.3	2.1e-29
30949:30964	attR	TTGTGTGCTCTTTTTT	NA	NA	NA	NA
>prophage 2
NZ_CP045931	Streptococcus pneumoniae strain AUSMDU00010538 chromosome, complete genome	2090792	52127	63575	2090792		Synechococcus_phage(33.33%)	7	NA	NA
WP_000668290.1|52127_54281_+	peptide cleavage/export ABC transporter	NA	W8CYL7	Bacillus_phage	28.0	1.0e-44
WP_154079314.1|55237_55780_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_075270809.1|55907_56657_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A1D8KNF0	Synechococcus_phage	39.2	2.4e-41
WP_000361208.1|56713_60439_+	phosphoribosylformylglycinamidine synthase	NA	A6N228	Microbacterium_phage	25.7	9.6e-38
WP_000220632.1|60531_61974_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	35.1	5.7e-55
WP_000182575.1|62010_63033_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	43.9	1.2e-64
WP_000717506.1|63029_63575_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.0	7.4e-24
>prophage 3
NZ_CP045931	Streptococcus pneumoniae strain AUSMDU00010538 chromosome, complete genome	2090792	124725	178376	2090792	bacteriocin,protease,transposase,tRNA	Staphylococcus_phage(37.5%)	52	NA	NA
WP_000424474.1|124725_125100_+|bacteriocin	SPH_0224 family bacteriocin-like peptide	bacteriocin	NA	NA	NA	NA
WP_000511670.1|125106_125289_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000619774.1|125307_126210_+	hypothetical protein	NA	NA	NA	NA	NA
WP_075271446.1|126232_126619_+	argininosuccinate lyase	NA	NA	NA	NA	NA
WP_075285017.1|126585_127344_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000680086.1|127816_128014_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001035345.1|129258_131352_+	pneumococcal surface protein A	NA	NA	NA	NA	NA
WP_001282984.1|131752_132874_+|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_075271302.1|132987_133470_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_000220946.1|133479_135393_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_000331980.1|135771_137451_-	ribonuclease J	NA	NA	NA	NA	NA
WP_000639577.1|137452_137686_-	DNA-dependent RNA polymerase auxiliary subunit epsilon family protein	NA	NA	NA	NA	NA
WP_001844323.1|138312_138510_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000977347.1|138503_138656_-|bacteriocin	fratricide two-peptide bacteriocin subunit CibB	bacteriocin	NA	NA	NA	NA
WP_000180803.1|138657_138843_-|bacteriocin	fratricide two-peptide bacteriocin subunit CibA	bacteriocin	NA	NA	NA	NA
WP_000865692.1|139020_139704_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
WP_000569820.1|139700_140138_+	ribosomal-protein-alanine N-acetyltransferase	NA	NA	NA	NA	NA
WP_000655047.1|140127_141138_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	NA	NA	NA	NA
WP_000375722.1|144952_145906_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_000288029.1|145915_147532_+	ABC transporter ATP-binding protein	NA	A0A1V0SE00	Indivirus	36.0	3.0e-28
WP_047475175.1|147880_148309_+	hypothetical protein	NA	NA	NA	NA	NA
WP_073506749.1|148314_149070_+	PIG-L family deacetylase	NA	NA	NA	NA	NA
WP_047475171.1|150648_151512_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000933464.1|151794_151995_+	peptide pheromone VP1	NA	NA	NA	NA	NA
WP_000720790.1|152061_152727_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000862431.1|152798_154025_+	MFS transporter	NA	NA	NA	NA	NA
WP_001141646.1|154522_155179_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_000253940.1|155168_155378_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000724936.1|155595_156426_+	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000694501.1|156579_157434_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000231826.1|157533_158907_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA	NA
WP_000085657.1|158899_159961_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	35.3	2.0e-28
WP_000444655.1|159962_160655_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000748391.1|160683_161253_-	MptD family putative ECF transporter S component	NA	NA	NA	NA	NA
WP_000532353.1|161387_162002_+	YesL family protein	NA	NA	NA	NA	NA
WP_000800582.1|161979_163650_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000278862.1|163661_164948_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_010976398.1|164951_165533_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000849621.1|165610_166081_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	NA	NA	NA	NA
WP_000075789.1|166373_167636_-	divalent metal cation transporter	NA	NA	NA	NA	NA
WP_001155339.1|167778_168732_-|transposase	IS30-like element ISSpn8 family transposase	transposase	H7BWC8	unidentified_phage	34.9	8.1e-34
WP_000745059.1|169191_169650_-	DUF3021 domain-containing protein	NA	NA	NA	NA	NA
WP_000861955.1|169646_170087_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_073077623.1|170326_170407_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000018169.1|170442_172392_+	DNA mismatch repair protein HexB	NA	A0A1B2LRQ5	Wolbachia_phage	32.1	1.0e-70
WP_001099502.1|172716_173184_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	52.6	3.7e-40
WP_001813190.1|173184_174390_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	49.5	7.7e-106
WP_000493839.1|174409_175045_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	46.9	9.9e-44
WP_001284096.1|175029_176130_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	38.2	3.8e-51
WP_000271493.1|176535_177129_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_000166597.1|177138_177702_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_000987428.1|177698_178376_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 4
NZ_CP045931	Streptococcus pneumoniae strain AUSMDU00010538 chromosome, complete genome	2090792	276552	347508	2090792	protease,integrase,transposase,holin	Streptococcus_phage(28.57%)	60	272866:272881	291709:291724
272866:272881	attL	CAAGCCTTGGAAGAAA	NA	NA	NA	NA
WP_001211068.1|276552_276975_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_000050748.1|277121_277298_+	hypothetical protein	NA	NA	NA	NA	NA
WP_041172756.1|277699_279913_+	alpha-xylosidase	NA	NA	NA	NA	NA
WP_041172755.1|280134_280611_-	glutathione peroxidase	NA	NA	NA	NA	NA
WP_075271307.1|280800_284037_+	LPXTG-anchored hyaluronate lyase	NA	NA	NA	NA	NA
WP_000167294.1|285203_285833_-	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA	NA
WP_000161486.1|285842_286844_-	sugar kinase	NA	NA	NA	NA	NA
WP_041172762.1|286874_287516_-	RpiB/LacA/LacB family sugar-phosphate isomerase	NA	NA	NA	NA	NA
WP_000185874.1|287534_288350_-	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
WP_000706826.1|288621_289056_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_000592948.1|289067_290258_+	unsaturated chondroitin disaccharide hydrolase	NA	NA	NA	NA	NA
WP_047474126.1|290268_290760_+	PTS system mannose/fructose/N-acetylgalactosamine-transporter subunit IIB	NA	NA	NA	NA	NA
WP_000026610.1|290774_291554_+	PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC	NA	NA	NA	NA	NA
WP_000148019.1|291540_292359_+	PTS mannose/fructose/sorbose transporter family subunit IID	NA	NA	NA	NA	NA
291709:291724	attR	CAAGCCTTGGAAGAAA	NA	NA	NA	NA
WP_000381738.1|292358_292652_+	preprotein translocase subunit YajC	NA	NA	NA	NA	NA
WP_047474124.1|292673_294575_+	alginate lyase family protein	NA	NA	NA	NA	NA
WP_001844476.1|294568_295636_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_154079316.1|295745_296081_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000711818.1|296091_296334_-	hypothetical protein	NA	NA	NA	NA	NA
WP_047474120.1|296344_296887_-	DUF3278 domain-containing protein	NA	NA	NA	NA	NA
WP_001082474.1|296902_297097_-	helix-turn-helix transcriptional regulator	NA	I3VYZ1	Thermoanaerobacterium_phage	42.6	7.2e-06
WP_000159408.1|297262_298213_+	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_000818547.1|298224_298542_+	cell division protein FtsL	NA	NA	NA	NA	NA
WP_047474114.1|298545_300798_+	PASTA domain-containing protein	NA	NA	NA	NA	NA
WP_000470828.1|300799_301780_+	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
WP_047474113.1|302388_304494_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	37.4	2.9e-116
WP_000032550.1|304789_305272_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
WP_000743575.1|305366_306851_-	DUF1846 domain-containing protein	NA	NA	NA	NA	NA
WP_047474112.1|307003_308611_+	alpha-glucosidase	NA	NA	NA	NA	NA
WP_033607495.1|308775_308943_+	S-ribosylhomocysteinase	NA	NA	NA	NA	NA
WP_047474105.1|309683_311129_+	LCP family protein	NA	A0A1X9I5X1	Streptococcus_phage	61.1	1.9e-135
WP_000565355.1|311130_311862_+	tyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_000664155.1|311870_312563_+	capsular polysaccharide biosynthesis protein CpsC	NA	A0A1X9I5E1	Streptococcus_phage	58.5	3.2e-64
WP_154079317.1|312572_313262_+	polysaccharide biosynthesis tyrosine autokinase	NA	A0A1X9I5D6	Streptococcus_phage	63.7	4.2e-72
WP_024477745.1|313276_314638_+	sugar transferase	NA	NA	NA	NA	NA
WP_001005725.1|314643_315387_+	WecB/TagA/CpsF family glycosyltransferase	NA	NA	NA	NA	NA
WP_001076780.1|315383_316208_+|holin	LPS cholinephosphotransferase	holin	A0A1V0SD50	Indivirus	38.2	4.0e-05
WP_000458862.1|316209_317088_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_000221685.1|317088_318423_+	oligosaccharide repeat unit polymerase	NA	NA	NA	NA	NA
WP_001085099.1|318450_319875_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000723325.1|319939_321028_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	30.2	1.6e-25
WP_000676130.1|321190_322060_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	K7QKA7	Escherichia_phage	63.2	2.0e-100
WP_001282454.1|322060_322654_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	H9NC63	Sphingomonas_phage	32.3	3.3e-09
WP_000141492.1|322665_323712_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	43.7	3.1e-71
WP_000600921.1|323773_324628_-	dTDP-4-dehydrorhamnose reductase	NA	A0A140G5S3	Enterobacteria_phage	36.6	1.7e-27
WP_000842568.1|324873_326856_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_047474091.1|327155_332459_+	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA	NA
WP_001039998.1|332625_334785_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_000248787.1|334781_335378_-	Holliday junction resolvase RecU	NA	A0A1L2JY30	Aeribacillus_phage	33.9	8.7e-18
WP_000179553.1|335443_335971_+	DUF1273 domain-containing protein	NA	NA	NA	NA	NA
WP_001808467.1|336028_336370_+	cell division regulator GpsB	NA	NA	NA	NA	NA
WP_050230812.1|336855_338013_+	class I SAM-dependent RNA methyltransferase	NA	NA	NA	NA	NA
WP_000039301.1|338025_339396_+	mid-cell-anchored protein MapZ	NA	NA	NA	NA	NA
WP_000158799.1|339471_340896_+	NADP-dependent phosphogluconate dehydrogenase	NA	M4QQM4	Ostreococcus_lucimarinus_virus	29.4	7.9e-41
WP_047474084.1|340907_341597_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000771107.1|341694_342591_+|holin	choline-binding protein CbpC	holin	NA	NA	NA	NA
WP_000765684.1|342708_343941_-	MFS transporter	NA	NA	NA	NA	NA
WP_001820155.1|344469_344808_-	lantibiotic-modifying protein	NA	NA	NA	NA	NA
WP_001808790.1|345359_346706_+|transposase	IS1380-like element ISSpn5 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	40.0	5.8e-78
WP_000619579.1|347178_347508_+|transposase	transposase	transposase	NA	NA	NA	NA
>prophage 5
NZ_CP045931	Streptococcus pneumoniae strain AUSMDU00010538 chromosome, complete genome	2090792	433125	480825	2090792	bacteriocin,protease,tRNA	Only_Syngen_Nebraska_virus(12.5%)	47	NA	NA
WP_000181373.1|433125_433629_+|tRNA	tRNA (cytidine(34)-2'-O)-methyltransferase	tRNA	NA	NA	NA	NA
WP_000185835.1|434081_434645_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_000653434.1|434634_435285_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_000867290.1|435312_435702_+	chromosome partitioning protein ParB	NA	NA	NA	NA	NA
WP_000333648.1|435706_436156_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001808720.1|436268_436871_+	DNA-directed RNA polymerase subunit delta	NA	NA	NA	NA	NA
WP_000105242.1|437260_438868_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	47.0	8.9e-142
WP_000026645.1|439426_441058_-	Na/Pi cotransporter family protein	NA	NA	NA	NA	NA
WP_000795181.1|441366_446346_+	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA	NA
WP_001096743.1|446435_447632_+	phosphoglycerate kinase	NA	NA	NA	NA	NA
WP_000119900.1|447767_448295_+	aromatic acid exporter family protein	NA	NA	NA	NA	NA
WP_000659547.1|448371_448728_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001122904.1|448764_450111_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_001808898.1|450206_450326_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000410534.1|450290_450440_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001220761.1|450891_452172_+	type I restriction-modification protein subunit S	NA	A0A1V0SKS6	Klosneuvirus	29.2	6.9e-12
WP_000651177.1|452228_453026_+	tyrosine-type DNA invertase PsrA	NA	A0A0H4TI16	Erysipelothrix_phage	28.7	1.3e-21
WP_154079318.1|453938_454976_-	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_000029036.1|454975_456439_-	SAM-dependent DNA methyltransferase	NA	NA	NA	NA	NA
WP_000229106.1|456451_458785_-	DEAD/DEAH box helicase	NA	A0A097BY72	Enterococcus_phage	28.9	9.9e-25
WP_013193390.1|459157_459358_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001820185.1|459392_459899_+	DUF2812 domain-containing protein	NA	NA	NA	NA	NA
WP_000255785.1|460066_461101_+	heat-inducible transcriptional repressor HrcA	NA	NA	NA	NA	NA
WP_000046027.1|461127_461652_+	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_000034662.1|462131_463955_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	47.2	1.3e-133
WP_000114422.1|463956_464313_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001066295.1|464714_465851_+	molecular chaperone DnaJ	NA	E3T4P7	Cafeteria_roenbergensis_virus	31.3	2.4e-24
WP_001808905.1|466184_466379_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000777753.1|466540_466828_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001278301.1|466837_467248_-	HIT family protein	NA	B5LJ12	Mycobacterium_phage	31.6	3.4e-05
WP_000889921.1|467315_468047_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.6	5.3e-25
WP_000653771.1|468043_469093_+	multidrug ABC transporter permease	NA	NA	NA	NA	NA
WP_000132572.1|469260_469590_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000876675.1|469865_470204_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000643611.1|470277_470946_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_050073044.1|470959_472300_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_000358815.1|472370_472499_-	quorum-sensing system pheromone BlpC	NA	NA	NA	NA	NA
WP_001069060.1|472555_473917_-|bacteriocin	bacteriocin secretion accessory protein	bacteriocin	NA	NA	NA	NA
WP_001093259.1|476366_476564_+|bacteriocin	bacteriocin-like peptide BlpI	bacteriocin	NA	NA	NA	NA
WP_001093248.1|477030_477300_+|bacteriocin	bacteriocin-like peptide BlpJ	bacteriocin	NA	NA	NA	NA
WP_047475057.1|477368_477617_+|bacteriocin	bacteriocin-like peptide BlpK	bacteriocin	NA	NA	NA	NA
WP_001809846.1|477860_478010_+|bacteriocin	bacteriocin-like peptide BlpO	bacteriocin	NA	NA	NA	NA
WP_000346296.1|478113_478233_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000727120.1|478529_478691_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001821950.1|478700_479072_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001844594.1|479685_480084_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000760532.1|480135_480825_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 6
NZ_CP045931	Streptococcus pneumoniae strain AUSMDU00010538 chromosome, complete genome	2090792	843221	855040	2090792		Streptococcus_phage(72.73%)	14	NA	NA
WP_001025704.1|843221_844130_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	27.7	3.1e-06
WP_000745389.1|844126_844588_+	signal peptidase II	NA	NA	NA	NA	NA
WP_000403199.1|844577_845465_+	RluA family pseudouridine synthase	NA	A0A2H4UV25	Bodo_saltans_virus	28.0	1.7e-09
WP_000728276.1|845467_847351_+	MBL fold metallo-hydrolase	NA	Q332B9	Clostridium_botulinum_C_phage	22.9	1.2e-09
WP_075218898.1|847430_848561_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	58.4	1.1e-114
WP_000254684.1|848570_849833_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	64.3	4.2e-139
WP_000689706.1|849836_850634_+	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	50.2	8.0e-59
WP_000033397.1|850853_851492_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	68.1	1.3e-75
WP_000806714.1|851488_852379_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	51.7	4.9e-73
WP_000358228.1|852418_852736_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	60.0	2.9e-28
WP_001166870.1|852738_853608_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	75.4	3.8e-115
WP_001261449.1|853834_854353_+	ClbS/DfsB family four-helix bundle protein	NA	NA	NA	NA	NA
WP_000345256.1|854461_854599_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000008691.1|854605_855040_+	replication initiator protein A	NA	A0A2P0VK56	Streptococcus_phage	40.0	4.6e-08
>prophage 7
NZ_CP045931	Streptococcus pneumoniae strain AUSMDU00010538 chromosome, complete genome	2090792	1163865	1217422	2090792	holin,transposase,protease	Bacillus_phage(27.27%)	49	NA	NA
WP_000811991.1|1163865_1164669_+|holin	phosphorylcholine transferase LicD	holin	A0A1V0SD50	Indivirus	27.1	4.0e-10
WP_001199649.1|1164670_1165480_+|holin	phosphorylcholine transferase LicD	holin	A0A1V0SD50	Indivirus	30.3	9.1e-10
WP_001126425.1|1165754_1168931_-	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_000166701.1|1169242_1170322_-	carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.9	6.3e-59
WP_001293838.1|1170371_1171295_-	aspartate carbamoyltransferase	NA	M1HGA5	Paramecium_bursaria_Chlorella_virus	31.7	5.1e-25
WP_000850024.1|1171313_1171835_-	bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR	NA	NA	NA	NA	NA
WP_000244451.1|1172045_1172675_-	endonuclease III	NA	NA	NA	NA	NA
WP_000773231.1|1172674_1173217_-	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_001861318.1|1173940_1175500_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A1B0RXA0	Streptococcus_phage	27.5	9.3e-11
WP_000895733.1|1175648_1176548_-|protease	zinc metalloprotease HtpX	protease	NA	NA	NA	NA
WP_000219823.1|1176549_1177110_-	LemA family protein	NA	NA	NA	NA	NA
WP_000801931.1|1177203_1177917_+	16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA	NA	NA	NA	NA
WP_000534454.1|1178183_1179503_+	uracil transporter	NA	Q9KX94	Enterobacteria_phage	35.0	2.7e-59
WP_000863628.1|1179697_1181269_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_000402066.1|1181280_1181613_-	putative DNA-binding protein	NA	NA	NA	NA	NA
WP_001813294.1|1181703_1182081_-	DUF1934 domain-containing protein	NA	NA	NA	NA	NA
WP_001003484.1|1182152_1183457_+	HD domain-containing protein	NA	E3T4P8	Cafeteria_roenbergensis_virus	29.8	5.0e-26
WP_000023528.1|1183469_1184276_+	sugar-phosphatase	NA	NA	NA	NA	NA
WP_001068669.1|1184443_1184791_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_000237409.1|1184909_1185239_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	37.8	8.2e-10
WP_000712093.1|1185232_1185607_-	fluoride efflux transporter CrcB	NA	NA	NA	NA	NA
WP_000362438.1|1185603_1185870_-	chorismate mutase	NA	NA	NA	NA	NA
WP_001162129.1|1185985_1186429_-	flavodoxin	NA	NA	NA	NA	NA
WP_000401773.1|1186532_1187468_+	bifunctional oligoribonuclease/PAP phosphatase NrnA	NA	NA	NA	NA	NA
WP_000710764.1|1187563_1187806_+	type B 50S ribosomal protein L31	NA	NA	NA	NA	NA
WP_000252103.1|1187862_1188441_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000199566.1|1190405_1191752_+	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA	NA
WP_000711943.1|1192257_1192428_-	hypothetical protein	NA	NA	NA	NA	NA
WP_144423368.1|1193035_1193840_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_000424224.1|1195029_1195479_-	DUF386 family protein	NA	NA	NA	NA	NA
WP_001000318.1|1195983_1196439_-	HIT domain-containing protein	NA	NA	NA	NA	NA
WP_000272434.1|1196460_1197921_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000239901.1|1197980_1199558_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_001180441.1|1199626_1201066_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000577773.1|1201079_1202009_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_001071050.1|1202019_1202952_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_000448317.1|1202952_1203639_-	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA	NA
WP_078101602.1|1204356_1205115_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001165928.1|1205292_1205901_+	DUF624 domain-containing protein	NA	NA	NA	NA	NA
WP_087671856.1|1206135_1207487_-|transposase	IS3 family transposase	transposase	A0A1B1P773	Bacillus_phage	50.6	6.5e-61
WP_000807141.1|1207782_1207920_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000945302.1|1208053_1209373_-	membrane protein	NA	NA	NA	NA	NA
WP_001843896.1|1209375_1210134_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.8	7.2e-09
WP_001108416.1|1210130_1211738_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	22.0	6.6e-12
WP_001076600.1|1211734_1213675_-	S9 family peptidase	NA	NA	NA	NA	NA
WP_000257531.1|1213707_1214172_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001058020.1|1214196_1216206_-	phosphotransferase	NA	NA	NA	NA	NA
WP_000807141.1|1216495_1216633_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000821280.1|1216834_1217422_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 8
NZ_CP045931	Streptococcus pneumoniae strain AUSMDU00010538 chromosome, complete genome	2090792	1309960	1316968	2090792		Streptococcus_phage(42.86%)	10	NA	NA
WP_000930000.1|1309960_1310677_-	CapA family protein	NA	A0A0N9SJ77	Staphylococcus_phage	30.7	3.0e-25
WP_001272961.1|1311189_1311801_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	42.4	4.9e-16
WP_000855754.1|1311845_1312574_+	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA	NA
WP_000272308.1|1312612_1313524_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	51.1	3.8e-89
WP_001206969.1|1313589_1313826_-	DUF4059 family protein	NA	NA	NA	NA	NA
WP_000590986.1|1313891_1314635_-	amino acid ABC transporter ATP-binding protein	NA	W5SAS9	Pithovirus	27.4	1.6e-13
WP_001103449.1|1314634_1315435_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_000889093.1|1315592_1315949_-	arsenate reductase family protein	NA	M1PLC0	Streptococcus_phage	57.3	1.2e-33
WP_001170346.1|1315961_1316474_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	55.6	1.3e-46
WP_000405832.1|1316473_1316968_-	GNAT family N-acetyltransferase	NA	M1PSC3	Streptococcus_phage	52.1	1.9e-42
>prophage 9
NZ_CP045931	Streptococcus pneumoniae strain AUSMDU00010538 chromosome, complete genome	2090792	1418856	1425607	2090792	protease	Streptococcus_phage(50.0%)	9	NA	NA
WP_000081011.1|1418856_1419822_+	NAD(P)/FAD-dependent oxidoreductase	NA	Q9JRK7	Streptococcus_phage	100.0	2.8e-66
WP_000011293.1|1419855_1420767_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	99.7	1.2e-154
WP_001231086.1|1420763_1421741_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	100.0	1.2e-184
WP_000163031.1|1421737_1422628_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.8	1.1e-05
WP_001140412.1|1422679_1423060_-	RidA family protein	NA	NA	NA	NA	NA
WP_000422599.1|1423070_1423658_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_000106346.1|1423666_1424899_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	59.0	4.2e-131
WP_000442275.1|1424930_1425101_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000162503.1|1425100_1425607_-	dihydrofolate reductase	NA	A0A1B2IAU3	Erwinia_phage	32.8	1.0e-19
>prophage 10
NZ_CP045931	Streptococcus pneumoniae strain AUSMDU00010538 chromosome, complete genome	2090792	1709640	1716972	2090792		uncultured_Mediterranean_phage(33.33%)	9	NA	NA
WP_000167830.1|1709640_1710342_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	36.5	1.2e-34
WP_001844979.1|1710749_1711724_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	40.8	1.8e-57
WP_001193673.1|1711713_1712670_+	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA	NA
WP_000764300.1|1712666_1713419_+	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	28.1	9.6e-14
WP_000858249.1|1713514_1714480_+	siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000821640.1|1714704_1714947_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	59.4	1.3e-17
WP_001222228.1|1714946_1715669_-	rRNA pseudouridine synthase	NA	NA	NA	NA	NA
WP_000105310.1|1715655_1716225_-	segregation/condensation protein B	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	34.9	5.0e-15
WP_000351907.1|1716243_1716972_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	22.3	5.3e-09
>prophage 11
NZ_CP045931	Streptococcus pneumoniae strain AUSMDU00010538 chromosome, complete genome	2090792	2068449	2077203	2090792		Streptococcus_phage(33.33%)	9	NA	NA
WP_000510412.1|2068449_2069289_-	energy-coupling factor transporter ATPase	NA	A0A2H4PQG7	Staphylococcus_phage	27.6	1.1e-13
WP_000835715.1|2069273_2070101_-	energy-coupling factor transporter ATPase	NA	W8CYL7	Bacillus_phage	33.3	3.5e-17
WP_000712132.1|2070097_2070643_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_075271383.1|2070653_2071484_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_000170215.1|2071516_2072800_-	insulinase family protein	NA	A0A1E1EST3	Acanthamoeba_castellanii_mimivirus	30.0	8.4e-18
WP_000424271.1|2072796_2074047_-	insulinase family protein	NA	A0A1X9I714	Streptococcus_phage	42.3	2.7e-93
WP_000455903.1|2074205_2074574_+	S4 domain-containing protein YaaA	NA	A0A1X9I5V8	Streptococcus_phage	57.3	7.0e-18
WP_000266660.1|2074576_2075674_+	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
WP_000073428.1|2075724_2077203_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	2.2e-94
