assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009664495.1_ASM966449v1	NZ_CP045930	Streptococcus pyogenes strain AUSMDU00010539 chromosome, complete genome	1	117850-117946	1	CRISPRCasFinder	no		cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Orphan	GCTAGATGGTGAAGAAGTCCCAGAA	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA|55aa|up_8|NZ_CP045930.1_110162_110327_-,NA|222aa|down_8|NZ_CP045930.1_130689_131355_-	NA|356aa|up_9|NZ_CP045930.1_108985_110053_-	TIGR03107, Glutamyl_aminopeptidase, glutamyl aminopeptidase	NA|55aa|up_8|NZ_CP045930.1_110162_110327_-	NA	NA|95aa|up_7|NZ_CP045930.1_110517_110802_+	pfam15513, DUF4651, Domain of unknown function (DUF4651)	NA|106aa|up_6|NZ_CP045930.1_110798_111116_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|209aa|up_5|NZ_CP045930.1_111133_111760_+	cd02796, tRNA_bind_bactPheRS, tRNA-binding-domain-containing prokaryotic phenylalanly tRNA synthetase (PheRS) beta chain	NA|132aa|up_4|NZ_CP045930.1_111911_112307_+	PRK07274, PRK07274, single-stranded DNA-binding protein; Provisional	NA|214aa|up_3|NZ_CP045930.1_112560_113202_-	COG1428, COG1428, Deoxynucleoside kinases [Nucleotide transport and metabolism]	NA|326aa|up_2|NZ_CP045930.1_113221_114199_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|291aa|up_1|NZ_CP045930.1_114185_115058_-	PRK00114, hslO, Hsp33 family molecular chaperone HslO	NA|498aa|up_0|NZ_CP045930.1_115204_116698_-	pfam08270, PRD_Mga, M protein trans-acting positive regulator (MGA) PRD domain	NA|283aa|down_0|NZ_CP045930.1_118962_119811_+	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|754aa|down_1|NZ_CP045930.1_120096_122358_+	NF033396, pilus_ancill_1, pilus ancillary protein 1	NA|174aa|down_2|NZ_CP045930.1_122354_122876_+	TIGR02227, Inactive_signal_peptidase_IA	NA|350aa|down_3|NZ_CP045930.1_122897_123947_+	TIGR03786, strep_pil_rpt, streptococcal pilin isopeptide linkage domain	NA|242aa|down_4|NZ_CP045930.1_123962_124688_+	TIGR03064, sortase_srtB, sortase, SrtB family	NA|196aa|down_5|NZ_CP045930.1_124704_125292_+	TIGR03786, strep_pil_rpt, streptococcal pilin isopeptide linkage domain	NA|402aa|down_6|NZ_CP045930.1_125450_126656_-	TIGR04094, AraC_family_transcriptional_regulator, YSIRK-targeted surface antigen transcriptional regulator	NA|1126aa|down_7|NZ_CP045930.1_127046_130424_+	pfam05738, Cna_B, Cna protein B-type domain	NA|222aa|down_8|NZ_CP045930.1_130689_131355_-	NA	NA|459aa|down_9|NZ_CP045930.1_131737_133114_+	COG2031, AtoE, Short chain fatty acids transporter [Lipid metabolism]
GCF_009664495.1_ASM966449v1	NZ_CP045930	Streptococcus pyogenes strain AUSMDU00010539 chromosome, complete genome	2	795992-796226	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas9,cas1,cas2,csn2	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Type II-A,Type II-B,Type II-C	GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAACTAT,GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAACT,GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAACT	39,37,37	0	0	NA	NA	II-A:II-A:II-A	2,3,3	3	TypeII-A,TypeII-B,TypeII-C	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA|214aa|up_8|NZ_CP045930.1_785453_786095_+,NA	NA|452aa|up_9|NZ_CP045930.1_783974_785330_+	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|214aa|up_8|NZ_CP045930.1_785453_786095_+	NA	NA|377aa|up_7|NZ_CP045930.1_786157_787288_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|251aa|up_6|NZ_CP045930.1_787297_788050_+	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|255aa|up_5|NZ_CP045930.1_788049_788814_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|211aa|up_4|NZ_CP045930.1_788813_789446_+	COG4478, COG4478, Predicted membrane protein [Function unknown]	cas9|1369aa|up_3|NZ_CP045930.1_789923_794030_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas1|290aa|up_2|NZ_CP045930.1_794029_794899_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|114aa|up_1|NZ_CP045930.1_794895_795237_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|221aa|up_0|NZ_CP045930.1_795226_795889_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|611aa|down_0|NZ_CP045930.1_796868_798701_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|327aa|down_1|NZ_CP045930.1_799001_799982_+	PHA03169, PHA03169, hypothetical protein; Provisional	NA|146aa|down_2|NZ_CP045930.1_800181_800619_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|340aa|down_3|NZ_CP045930.1_800748_801768_+	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|142aa|down_4|NZ_CP045930.1_801974_802400_+	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|164aa|down_5|NZ_CP045930.1_802418_802910_+	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|270aa|down_6|NZ_CP045930.1_802926_803736_+	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|276aa|down_7|NZ_CP045930.1_803732_804560_+	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]	NA|550aa|down_8|NZ_CP045930.1_804695_806345_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|263aa|down_9|NZ_CP045930.1_806348_807137_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
GCF_009664495.1_ASM966449v1	NZ_CP045930	Streptococcus pyogenes strain AUSMDU00010539 chromosome, complete genome	3	799454-799669	2	CRT	no	cas9,cas1,cas2,csn2	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Type II-A,Type II-B,Type II-C	AGGTAAAGACGGTAAGGACGGCCAANA	27	0	0	NA	NA	NA	4	4	TypeII-A,TypeII-B,TypeII-C	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA|214aa|up_9|NZ_CP045930.1_785453_786095_+,NA	NA|214aa|up_9|NZ_CP045930.1_785453_786095_+	NA	NA|377aa|up_8|NZ_CP045930.1_786157_787288_+	PRK08599, PRK08599, oxygen-independent coproporphyrinogen III oxidase	NA|251aa|up_7|NZ_CP045930.1_787297_788050_+	COG3884, FatA, Acyl-ACP thioesterase [Lipid metabolism]	NA|255aa|up_6|NZ_CP045930.1_788049_788814_+	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase	NA|211aa|up_5|NZ_CP045930.1_788813_789446_+	COG4478, COG4478, Predicted membrane protein [Function unknown]	cas9|1369aa|up_4|NZ_CP045930.1_789923_794030_+	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms]	cas1|290aa|up_3|NZ_CP045930.1_794029_794899_+	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1	cas2|114aa|up_2|NZ_CP045930.1_794895_795237_+	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms]	csn2|221aa|up_1|NZ_CP045930.1_795226_795889_+	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2	NA|611aa|up_0|NZ_CP045930.1_796868_798701_+	PRK05433, PRK05433, GTP-binding protein LepA; Provisional	NA|146aa|down_0|NZ_CP045930.1_800181_800619_+	PRK00222, PRK00222, peptide-methionine (R)-S-oxide reductase MsrB	NA|340aa|down_1|NZ_CP045930.1_800748_801768_+	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|142aa|down_2|NZ_CP045930.1_801974_802400_+	COG2893, ManX, Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]	NA|164aa|down_3|NZ_CP045930.1_802418_802910_+	COG3444, COG3444, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]	NA|270aa|down_4|NZ_CP045930.1_802926_803736_+	COG3715, ManY, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]	NA|276aa|down_5|NZ_CP045930.1_803732_804560_+	COG3716, ManZ, Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]	NA|550aa|down_6|NZ_CP045930.1_804695_806345_+	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|263aa|down_7|NZ_CP045930.1_806348_807137_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|349aa|down_8|NZ_CP045930.1_807130_808177_+	cd13546, PBP2_BitB, Substrate binding domain of a putative iron transporter BitB, a member of the type 2 periplasmic binding fold superfamily	NA|466aa|down_9|NZ_CP045930.1_808291_809689_+	cd07100, ALDH_SSADH1_GabD1, Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like
GCF_009664495.1_ASM966449v1	NZ_CP045930	Streptococcus pyogenes strain AUSMDU00010539 chromosome, complete genome	4	991956-992057	3	CRISPRCasFinder	no		cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	Orphan	AATAATTGGTATAGTCTAATTATA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA,NA|262aa|down_6|NZ_CP045930.1_999887_1000673_+	NA|83aa|up_9|NZ_CP045930.1_979672_979921_-	COG2261, COG2261, Predicted membrane protein [Function unknown]	NA|773aa|up_8|NZ_CP045930.1_980283_982602_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|441aa|up_7|NZ_CP045930.1_983130_984453_+	COG1115, AlsT, Na+/alanine symporter [Amino acid transport and metabolism]	NA|412aa|up_6|NZ_CP045930.1_984572_985808_+	COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]	NA|258aa|up_5|NZ_CP045930.1_986177_986951_-	pfam07373, CAMP_factor, CAMP factor (Cfa)	NA|279aa|up_4|NZ_CP045930.1_987320_988157_-	cd00996, PBP2_AatB_like, Polar amino acids-binding domain of ATP-binding cassette transporter-like systems that belong to the type 2 periplasmic binding fold protein superfamily	NA|210aa|up_3|NZ_CP045930.1_988172_988802_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|214aa|up_2|NZ_CP045930.1_988811_989453_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|112aa|up_1|NZ_CP045930.1_989559_989895_-	COG2824, PhnA, Uncharacterized Zn-ribbon-containing protein involved in phosphonate metabolism [Inorganic ion transport and metabolism]	NA|605aa|up_0|NZ_CP045930.1_990090_991905_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|186aa|down_0|NZ_CP045930.1_992080_992638_-	TIGR02227, Inactive_signal_peptidase_IA	NA|501aa|down_1|NZ_CP045930.1_992855_994358_-	PRK05826, PRK05826, pyruvate kinase; Provisional	NA|338aa|down_2|NZ_CP045930.1_994420_995434_-	PRK03202, PRK03202, ATP-dependent 6-phosphofructokinase	NA|1037aa|down_3|NZ_CP045930.1_995513_998624_-	PRK07279, dnaE, DNA polymerase III DnaE; Reviewed	NA|124aa|down_4|NZ_CP045930.1_998808_999180_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|233aa|down_5|NZ_CP045930.1_999179_999878_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|262aa|down_6|NZ_CP045930.1_999887_1000673_+	NA	NA|205aa|down_7|NZ_CP045930.1_1000803_1001418_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|209aa|down_8|NZ_CP045930.1_1002151_1002778_+	pfam12978, DUF3862, Domain of Unknown Function with PDB structure (DUF3862)	NA|755aa|down_9|NZ_CP045930.1_1003034_1005299_-	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins
GCF_009664495.1_ASM966449v1	NZ_CP045930	Streptococcus pyogenes strain AUSMDU00010539 chromosome, complete genome	5	1186627-1187456	3,4,2	CRT,CRISPRCasFinder,PILER-CR	no	cas2,cas1,cas4,cas7,cas8c,cas5,cas3	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	 Type I-U?,Type I-U,Type I-C	TATTTCAATCCACTCACCCATGAAGGGTGAGAC,ATTTCAATCCACTCACCCATGAAGGGTGAGAC,ATTTCAATCCACTCACCCATGAAGGGTGAGAC	33,32,32	0	0	NA	NA	I-C:I-C:I-C	12,12,12	12	TypeI-U?,TypeI-U,TypeI-C	cas3,DinG,csm6,cas9,cas1,cas2,csn2,cas4,cas7,cas8c,cas5,DEDDh,csa3	NA,NA	NA|412aa|up_9|NZ_CP045930.1_1176562_1177798_-	PRK01388, PRK01388, arginine deiminase; Provisional	NA|227aa|up_8|NZ_CP045930.1_1178071_1178752_-	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|158aa|up_7|NZ_CP045930.1_1178893_1179367_+	COG1438, ArgR, Arginine repressor [Transcription]	NA|239aa|up_6|NZ_CP045930.1_1179532_1180249_-	COG3382, COG3382, Solo B3/4 domain (OB-fold DNA/RNA-binding) of Phe-aaRS-beta [General function prediction only]	NA|360aa|up_5|NZ_CP045930.1_1180262_1181342_-	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|578aa|up_4|NZ_CP045930.1_1181414_1183148_-	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]	NA|247aa|up_3|NZ_CP045930.1_1183144_1183885_-	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|369aa|up_2|NZ_CP045930.1_1183972_1185079_-	PRK14018, PRK14018, bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB	NA|208aa|up_1|NZ_CP045930.1_1185121_1185745_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|237aa|up_0|NZ_CP045930.1_1185757_1186468_-	COG0785, CcdA, Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]	cas2|98aa|down_0|NZ_CP045930.1_1187604_1187898_-	COG1343, COG1343, CRISPR-associated protein Cas2 [Defense mechanisms]	cas1|342aa|down_1|NZ_CP045930.1_1187908_1188934_-	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas4|225aa|down_2|NZ_CP045930.1_1188930_1189605_-	COG1468, COG1468, CRISPR-associated protein Cas4 (RecB family exonuclease) [Defense    mechanisms]	cas7|283aa|down_3|NZ_CP045930.1_1189606_1190455_-	COG3649, COG3649, CRISPR system related protein [Defense mechanisms]	cas8c|632aa|down_4|NZ_CP045930.1_1190459_1192355_-	TIGR01863, CRISPR-associated_protein_CT1133_family, CRISPR-associated protein Cas8c/Csd1, subtype I-C/DVULG	cas5|243aa|down_5|NZ_CP045930.1_1192354_1193083_-	TIGR01876, cas_Cas5d, CRISPR-associated protein Cas5, subtype I-C/DVULG	cas3|803aa|down_6|NZ_CP045930.1_1193215_1195624_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|883aa|down_7|NZ_CP045930.1_1195777_1198426_-	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|188aa|down_8|NZ_CP045930.1_1198427_1198991_-	pfam13238, AAA_18, AAA domain	NA|67aa|down_9|NZ_CP045930.1_1198987_1199188_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]
