The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP045970	Listeria monocytogenes strain AUSMDU00000235 chromosome, complete genome	3005026	125389	131914	3005026	tail	Listeria_phage(33.33%)	10	NA	NA
WP_003721739.1|125389_125842_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A059T7S0	Listeria_phage	47.9	4.0e-31
WP_003721740.1|125847_126183_-	helix-turn-helix transcriptional regulator	NA	A0A2H4JAR9	uncultured_Caudovirales_phage	52.5	4.0e-20
WP_003732219.1|126399_126828_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003732220.1|126839_127256_+	hypothetical protein	NA	A8ASQ1	Listeria_phage	39.3	1.3e-20
WP_003733902.1|127533_127923_+	DUF5072 domain-containing protein	NA	NA	NA	NA	NA
WP_003721744.1|127935_128448_+|tail	phage major tail protein, TP901-1 family	tail	A0A097PBF4	Streptococcus_pyogenes_phage	62.7	1.2e-47
WP_003721745.1|128495_128798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_072217178.1|128839_129244_+	phenylalanine racemase	NA	NA	NA	NA	NA
WP_061112172.1|129230_131099_+	hypothetical protein	NA	A0A097PAU2	Streptococcus_pyogenes_phage	45.8	3.5e-20
WP_057171696.1|131095_131914_+|tail	phage tail family protein	tail	A0A060AFE1	Staphylococcus_phage	35.0	2.5e-39
>prophage 2
NZ_CP045970	Listeria monocytogenes strain AUSMDU00000235 chromosome, complete genome	3005026	1183158	1192116	3005026		Hokovirus(28.57%)	9	NA	NA
WP_003721506.1|1183158_1183542_+	glycerol-3-phosphate cytidylyltransferase	NA	A0A1V0SGE7	Hokovirus	40.7	1.4e-16
WP_003721507.1|1183563_1184547_+	glycosyltransferase family 2 protein	NA	A0A1V0SAH6	Catovirus	35.3	3.1e-12
WP_010989660.1|1184561_1185575_+	glycosyltransferase	NA	A0A1V0SAH6	Catovirus	32.0	7.9e-11
WP_003721509.1|1185783_1187274_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	49.7	9.5e-114
WP_033918355.1|1187285_1188110_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.9	9.7e-68
WP_003721511.1|1188122_1188431_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA	NA
WP_003721512.1|1188490_1188895_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_154079549.1|1189023_1190580_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	28.1	3.9e-17
WP_033918357.1|1190712_1192116_+	hypothetical protein	NA	Q38324	Lactococcus_phage	25.4	1.7e-16
>prophage 3
NZ_CP045970	Listeria monocytogenes strain AUSMDU00000235 chromosome, complete genome	3005026	1324358	1383926	3005026	tRNA,protease	Bacillus_virus(16.67%)	58	NA	NA
WP_003723562.1|1324358_1325498_-|protease	PrsW family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_003723563.1|1325578_1325974_-	helix-turn-helix transcriptional regulator	NA	A9D9J6	Lactobacillus_prophage	57.4	1.3e-14
WP_003727524.1|1326124_1326340_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003732794.1|1326458_1326992_+|protease	matrixin family metalloprotease	protease	NA	NA	NA	NA
WP_003732795.1|1327009_1327675_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003732796.1|1327936_1328875_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003723884.1|1328989_1330273_+	trigger factor	NA	NA	NA	NA	NA
WP_003723886.1|1330458_1331718_+|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	63.2	1.4e-145
WP_003723887.1|1331836_1332403_+	type I signal peptidase SipX	NA	NA	NA	NA	NA
WP_003723888.1|1332437_1333007_+	type I signal peptidase SipY	NA	NA	NA	NA	NA
WP_003723889.1|1333108_1333651_+	type I signal peptidase SipZ	NA	NA	NA	NA	NA
WP_003723890.1|1333660_1334524_+	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA	NA
WP_003723891.1|1334520_1335306_+	ribonuclease HII	NA	G4YAY0	Emiliania_huxleyi_virus	39.2	3.0e-26
WP_003723892.1|1335439_1336300_+	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_003732799.1|1336570_1338649_+	type I DNA topoisomerase	NA	A0A1V0SB35	Catovirus	37.5	3.2e-107
WP_003723999.1|1338711_1340016_+|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	tRNA	NA	NA	NA	NA
WP_003724000.1|1340298_1341201_+	tyrosine recombinase XerC	NA	A0A097EYL9	Mycobacterium_phage	28.6	1.2e-13
WP_003724001.1|1341221_1341761_+|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003732800.1|1341774_1343184_+|protease	ATP-dependent protease ATPase subunit HslU	protease	W6AS21	Erwinia_phage	28.7	3.7e-43
WP_003726695.1|1343204_1343984_+	GTP-sensing pleiotropic transcriptional regulator CodY	NA	NA	NA	NA	NA
WP_003724129.1|1344086_1344506_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003724130.1|1344527_1344839_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003724131.1|1344841_1345714_+	aldose 1-epimerase family protein	NA	NA	NA	NA	NA
WP_003724132.1|1345755_1346352_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_003732802.1|1346509_1346917_+	CoA-binding protein	NA	NA	NA	NA	NA
WP_003723731.1|1347097_1349065_+	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	42.5	6.7e-123
WP_003723732.1|1349061_1351521_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	31.6	1.1e-101
WP_003723733.1|1351603_1352071_+	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
WP_097296616.1|1352400_1354254_+	lmo1289 family class 1 internalin	NA	NA	NA	NA	NA
WP_003723735.1|1354585_1356388_+	class 1 internalin InlK	NA	NA	NA	NA	NA
WP_003723736.1|1356421_1358290_-	acetyltransferase	NA	B5WZU0	Pseudomonas_phage	31.9	6.5e-43
WP_003723737.1|1358502_1359201_+	glycerophosphodiester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	32.4	1.3e-12
WP_003723738.1|1359433_1361110_+	glycerol-3-phosphate dehydrogenase/oxidase	NA	NA	NA	NA	NA
WP_003723739.1|1361235_1362153_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_003719566.1|1362275_1362509_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_003733804.1|1362619_1363843_+	GTPase HflX	NA	NA	NA	NA	NA
WP_003723434.1|1363835_1365062_+	methionine gamma-lyase family protein	NA	NA	NA	NA	NA
WP_003719570.1|1365265_1365634_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003723435.1|1365704_1367039_+	type I glutamate--ammonia ligase	NA	A0A1V0SJ53	Klosneuvirus	26.4	2.0e-06
WP_033918375.1|1367182_1368478_+	arsenical efflux pump membrane protein ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	61.9	1.8e-145
WP_003723437.1|1368521_1369043_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003723438.1|1369072_1369687_-	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	62.1	9.3e-15
WP_003723439.1|1369843_1370173_+	cell division suppressor protein YneA	NA	NA	NA	NA	NA
WP_003723440.1|1370264_1370492_+	DUF896 domain-containing protein	NA	NA	NA	NA	NA
WP_003723441.1|1370638_1372633_+	transketolase	NA	NA	NA	NA	NA
WP_003723442.1|1372853_1373093_+	YneF family protein	NA	NA	NA	NA	NA
WP_003723443.1|1373143_1373986_-	DUF2785 domain-containing protein	NA	NA	NA	NA	NA
WP_003723444.1|1374004_1374736_-	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	59.1	1.2e-80
WP_003723445.1|1374757_1375264_-	ParB-like nuclease domain-containing protein	NA	A0A220GKT8	Streptococcus_phage	66.7	4.0e-56
WP_003723446.1|1375273_1376578_-	DUF3440 domain-containing protein	NA	A0A220GKF8	Streptococcus_phage	52.1	9.5e-134
WP_072217143.1|1376567_1377773_-	helicase SNF2	NA	L0P6E9	Lactobacillus_phage	47.1	3.7e-92
WP_003723448.1|1377750_1378125_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003723449.1|1378417_1379146_+	UMP kinase	NA	NA	NA	NA	NA
WP_003723450.1|1379145_1379703_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_003723451.1|1379932_1380691_+	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	41.4	1.1e-22
WP_003723452.1|1380704_1381493_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003723453.1|1381507_1382650_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_003723454.1|1382663_1383926_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
>prophage 4
NZ_CP045970	Listeria monocytogenes strain AUSMDU00000235 chromosome, complete genome	3005026	1875183	1883469	3005026		Synechococcus_phage(33.33%)	8	NA	NA
WP_003722243.1|1875183_1875750_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	35.9	7.0e-25
WP_003722244.1|1875746_1876796_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.2	1.0e-61
WP_003722245.1|1876814_1878242_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	34.6	1.1e-53
WP_003722246.1|1878226_1880446_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.4	2.6e-160
WP_003722247.1|1880438_1881122_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_003722248.1|1881125_1881371_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_003722249.1|1881382_1882096_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3F9V5	Synechococcus_phage	38.7	2.7e-42
WP_003722250.1|1882176_1883469_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.6	7.2e-17
>prophage 5
NZ_CP045970	Listeria monocytogenes strain AUSMDU00000235 chromosome, complete genome	3005026	2398928	2437760	3005026	terminase,tail,holin	Listeria_phage(93.18%)	56	NA	NA
WP_154079555.1|2398928_2399378_+	hypothetical protein	NA	Q9T196	Listeria_phage	79.9	3.4e-59
WP_039120634.1|2399458_2399848_-	hypothetical protein	NA	NA	NA	NA	NA
WP_154079556.1|2399844_2400198_-	hypothetical protein	NA	NA	NA	NA	NA
WP_061112563.1|2400194_2400713_-	hypothetical protein	NA	NA	NA	NA	NA
WP_154079557.1|2401120_2401324_-	hypothetical protein	NA	NA	NA	NA	NA
WP_154079558.1|2401447_2402290_-	M15 family peptidase	NA	A0A059T7Y8	Listeria_phage	85.5	2.0e-132
WP_012951558.1|2402289_2402547_-|holin	phage holin	holin	A8ATB7	Listeria_phage	69.0	3.2e-25
WP_064614890.1|2402546_2402849_-	hypothetical protein	NA	A0A059T5E6	Listeria_phage	94.0	7.7e-39
WP_064614892.1|2402899_2405065_-	hypothetical protein	NA	A8ATW1	Listeria_phage	92.4	0.0e+00
WP_003745022.1|2405077_2406646_-	hypothetical protein	NA	A8ATW0	Listeria_phage	98.5	2.2e-302
WP_154079559.1|2406642_2411433_-|tail	phage tail tape measure protein	tail	A8ATV9	Listeria_phage	87.4	0.0e+00
WP_154079560.1|2411437_2411749_-	hypothetical protein	NA	A0A0B5D116	Listeria_phage	92.3	1.6e-39
WP_061107467.1|2411745_2412177_-	hypothetical protein	NA	A0A0B5D0B8	Listeria_phage	94.4	1.6e-69
WP_033533848.1|2412232_2412919_-	Ig domain-containing protein	NA	A0A0B5CYK8	Listeria_phage	97.8	4.4e-114
WP_154079561.1|2412923_2413295_-	hypothetical protein	NA	A0A0B5CTY4	Listeria_phage	99.2	5.5e-63
WP_031672311.1|2413291_2413609_-	HK97 gp10 family phage protein	NA	A0A0B5CTS1	Listeria_phage	100.0	2.0e-53
WP_014930192.1|2413598_2413964_-	hypothetical protein	NA	A0A0B5D114	Listeria_phage	100.0	1.5e-65
WP_031672309.1|2413963_2414317_-	hypothetical protein	NA	A0A0B5D0B3	Listeria_phage	100.0	1.7e-61
WP_033533849.1|2414486_2415359_-	hypothetical protein	NA	A0A0B5CTX8	Listeria_phage	100.0	4.5e-164
WP_070777299.1|2415381_2415936_-	hypothetical protein	NA	A8ATU9	Listeria_phage	98.9	3.3e-88
WP_003719493.1|2416032_2417076_-	gp4	NA	A0A0B5D111	Listeria_phage	98.3	9.7e-198
WP_070213813.1|2417080_2418640_-	hypothetical protein	NA	A8ATU7	Listeria_phage	97.1	9.2e-293
WP_077947132.1|2418654_2419974_-|terminase	PBSX family phage terminase large subunit	terminase	A0A0B5CYJ6	Listeria_phage	94.5	4.2e-254
WP_003733714.1|2419966_2420707_-	hypothetical protein	NA	A8ATU5	Listeria_phage	98.8	7.0e-134
WP_003725074.1|2420746_2420974_-	hypothetical protein	NA	A0A0B5CTV3	Listeria_phage	94.7	1.8e-32
WP_154079562.1|2421234_2421807_-	sigma-70 family RNA polymerase sigma factor	NA	A0A0B5D145	Listeria_phage	89.5	6.7e-92
WP_003734975.1|2421894_2422050_-	DUF3954 domain-containing protein	NA	A0A0B5D0E9	Listeria_phage	98.0	1.1e-22
WP_154079563.1|2422194_2422599_-	hypothetical protein	NA	A8AU00	Listeria_phage	97.8	1.0e-70
WP_003759675.1|2422564_2422705_-	BH0509 family protein	NA	A8ATZ9	Listeria_phage	87.0	4.7e-15
WP_039382681.1|2422701_2423007_-	hypothetical protein	NA	A8ATZ8	Listeria_phage	83.2	1.9e-37
WP_154079564.1|2423034_2423412_-	hypothetical protein	NA	NA	NA	NA	NA
WP_154079565.1|2423434_2423917_-	single-stranded DNA-binding protein	NA	A8ATZ7	Listeria_phage	75.6	1.8e-58
WP_003769969.1|2423913_2424237_-	hypothetical protein	NA	A0A059T801	Listeria_phage	90.8	1.7e-44
WP_154079566.1|2424217_2424460_-	hypothetical protein	NA	NA	NA	NA	NA
WP_038409808.1|2424456_2424978_-	hypothetical protein	NA	A8ASP2	Listeria_phage	96.5	1.6e-92
WP_038409807.1|2424974_2425163_-	hypothetical protein	NA	D7RWG4	Brochothrix_phage	47.2	4.4e-08
WP_077913500.1|2425166_2425538_-	hypothetical protein	NA	R4ICD6	Listeria_phage	100.0	1.2e-38
WP_038409806.1|2425534_2425903_-	hypothetical protein	NA	A8ASN9	Listeria_phage	95.9	6.5e-64
WP_038409805.1|2425899_2426496_-	DUF1642 domain-containing protein	NA	A8ATY9	Listeria_phage	48.5	3.1e-39
WP_003722560.1|2426492_2427305_-	DNA adenine methylase	NA	Q8W5X3	Listeria_phage	95.6	4.8e-152
WP_009924222.1|2427301_2428213_-	DnaD domain-containing protein	NA	A0A0B5D175	Listeria_phage	89.5	2.2e-137
WP_009924223.1|2428250_2429162_-	recombinase RecT	NA	NA	NA	NA	NA
WP_154079567.1|2429154_2430666_-	ATPase	NA	A0A2I7SC81	Paenibacillus_phage	33.5	5.6e-69
WP_003733629.1|2430898_2431087_-	hypothetical protein	NA	Q9T175	Listeria_phage	80.6	1.2e-21
WP_154079568.1|2431194_2431410_-	hypothetical protein	NA	Q9T176	Listeria_phage	84.5	7.7e-25
WP_154079569.1|2431402_2431939_-	hypothetical protein	NA	A0A059T5F0	Listeria_phage	89.0	2.5e-80
WP_154079570.1|2432061_2432835_-	phage regulatory protein	NA	R9QMT9	Lactococcus_phage	41.1	3.6e-40
WP_154079571.1|2432836_2433034_-	hypothetical protein	NA	NA	NA	NA	NA
WP_154079581.1|2433050_2433227_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_154079572.1|2433453_2433936_+	helix-turn-helix domain-containing protein	NA	A8ASM2	Listeria_phage	50.4	1.7e-27
WP_003747292.1|2434092_2434260_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003747290.1|2434315_2434534_+	hypothetical protein	NA	A0A059T6E3	Listeria_phage	81.9	2.4e-26
WP_003733640.1|2434549_2435272_+	hypothetical protein	NA	A0A059T7P9	Listeria_phage	97.9	2.8e-103
WP_003733641.1|2435294_2435900_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003749252.1|2435912_2436335_+	hypothetical protein	NA	NA	NA	NA	NA
WP_154079573.1|2436401_2437760_+	recombinase family protein	NA	Q8LTD8	Listeria_phage	89.6	3.1e-236
>prophage 6
NZ_CP045970	Listeria monocytogenes strain AUSMDU00000235 chromosome, complete genome	3005026	2592078	2599922	3005026		Streptococcus_phage(50.0%)	7	NA	NA
WP_003722604.1|2592078_2593050_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	39.4	5.2e-52
WP_003722605.1|2593057_2594026_-	YvcK family protein	NA	A1IMD5	Streptococcus_phage	43.3	6.7e-68
WP_003722606.1|2594027_2594903_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	29.7	1.9e-08
WP_033918280.1|2595010_2596741_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	54.0	3.0e-175
WP_003734087.1|2596782_2597844_-	galactose mutarotase	NA	NA	NA	NA	NA
WP_009924988.1|2597860_2598844_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	37.2	2.6e-51
WP_003722610.1|2598962_2599922_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	53.7	2.0e-88
