assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009664755.1_ASM966475v1	NZ_CP045970	Listeria monocytogenes strain AUSMDU00000235 chromosome, complete genome	1	554553-555137	1	CRT	no		csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh	Orphan	GATGTAAGTNATTTTGATACNAGTTCAGTAACTNATATG	39	1	1	554982-555020	NZ_CP045970.1_552777-552815	NA	7	7	Orphan	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh	NA,NA|158aa|down_0|NZ_CP045970.1_556030_556504_+,NA|162aa|down_1|NZ_CP045970.1_556523_557009_+,NA|89aa|down_3|NZ_CP045970.1_557417_557684_+,NA|123aa|down_5|NZ_CP045970.1_558509_558878_+,NA|91aa|down_6|NZ_CP045970.1_560272_560545_+,NA|116aa|down_7|NZ_CP045970.1_560572_560920_+,NA|81aa|down_8|NZ_CP045970.1_561323_561566_+	NA|252aa|up_9|NZ_CP045970.1_538139_538895_-	pfam16160, DUF4866, Domain of unknown function (DUF4866)	NA|720aa|up_8|NZ_CP045970.1_539012_541172_-	pfam01841, Transglut_core, Transglutaminase-like superfamily	NA|383aa|up_7|NZ_CP045970.1_541168_542317_-	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only]	NA|316aa|up_6|NZ_CP045970.1_542321_543269_-	COG0714, COG0714, MoxR-like ATPases [General function prediction only]	NA|532aa|up_5|NZ_CP045970.1_543424_545020_+	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]	NA|428aa|up_4|NZ_CP045970.1_545153_546437_+	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain	NA|367aa|up_3|NZ_CP045970.1_546437_547538_+	COG3535, COG3535, Uncharacterized conserved protein [Function unknown]	NA|517aa|up_2|NZ_CP045970.1_547530_549081_+	COG0145, HyuA, N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]	NA|513aa|up_1|NZ_CP045970.1_549900_551439_+	pfam05043, Mga, Mga helix-turn-helix domain	NA|690aa|up_0|NZ_CP045970.1_551690_553760_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|158aa|down_0|NZ_CP045970.1_556030_556504_+	NA	NA|162aa|down_1|NZ_CP045970.1_556523_557009_+	NA	NA|102aa|down_2|NZ_CP045970.1_557036_557342_+	TIGR01167, Zinc_metalloprotease_ZmpB, LPXTG-motif cell wall anchor domain	NA|89aa|down_3|NZ_CP045970.1_557417_557684_+	NA	NA|95aa|down_4|NZ_CP045970.1_558224_558509_+	pfam11328, DUF3130, Protein of unknown function (DUF3130	NA|123aa|down_5|NZ_CP045970.1_558509_558878_+	NA	NA|91aa|down_6|NZ_CP045970.1_560272_560545_+	NA	NA|116aa|down_7|NZ_CP045970.1_560572_560920_+	NA	NA|81aa|down_8|NZ_CP045970.1_561323_561566_+	NA	NA|326aa|down_9|NZ_CP045970.1_561648_562626_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]
GCF_009664755.1_ASM966475v1	NZ_CP045970	Listeria monocytogenes strain AUSMDU00000235 chromosome, complete genome	2	593627-593909	1,1,2	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas8b2,cas7,cas5,cas3,cas2	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh	Unclear	GTTTTAGTTACTTATTTTGAAATGTAAAT,GTTTTAGTTACTTATTTTGAAATGTAAAT,GTTTTAGTTACTTATTTTGAAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	4,4,4	4	Unclear	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh	NA|133aa|up_5|NZ_CP045970.1_588615_589014_+,NA|193aa|down_0|NZ_CP045970.1_594300_594879_+	NA|217aa|up_9|NZ_CP045970.1_584678_585329_+	COG0176, MipB, Transaldolase [Carbohydrate transport and metabolism]	NA|687aa|up_8|NZ_CP045970.1_585437_587498_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|201aa|up_7|NZ_CP045970.1_587501_588104_+	COG0794, GutQ, Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]	NA|156aa|up_6|NZ_CP045970.1_588131_588599_+	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit	NA|133aa|up_5|NZ_CP045970.1_588615_589014_+	NA	NA|217aa|up_4|NZ_CP045970.1_589024_589675_+	COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]	NA|349aa|up_3|NZ_CP045970.1_589671_590718_+	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases	NA|98aa|up_2|NZ_CP045970.1_590733_591027_+	cd05566, PTS_IIB_galactitol, PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS)	NA|424aa|up_1|NZ_CP045970.1_591041_592313_+	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|312aa|up_0|NZ_CP045970.1_592452_593388_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|193aa|down_0|NZ_CP045970.1_594300_594879_+	NA	NA|227aa|down_1|NZ_CP045970.1_594986_595667_+	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain	NA|120aa|down_2|NZ_CP045970.1_595691_596051_-	TIGR02058, lin0512_fam, conserved hypothetical protein	NA|153aa|down_3|NZ_CP045970.1_596057_596516_-	pfam12802, MarR_2, MarR family	NA|612aa|down_4|NZ_CP045970.1_596897_598733_+	NF033186, internalin_K, class 1 internalin InlK	NA|144aa|down_5|NZ_CP045970.1_598833_599265_+	pfam00582, Usp, Universal stress protein family	NA|477aa|down_6|NZ_CP045970.1_599311_600742_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|down_7|NZ_CP045970.1_600862_601678_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	cas6|241aa|down_8|NZ_CP045970.1_602029_602752_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b2|563aa|down_9|NZ_CP045970.1_602767_604456_+	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1
GCF_009664755.1_ASM966475v1	NZ_CP045970	Listeria monocytogenes strain AUSMDU00000235 chromosome, complete genome	3	609105-611012	2,2,3	PILER-CR,CRISPRCasFinder,CRT	no	cas6,cas8b2,cas7,cas5,cas3,cas2	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh	Unclear	GTTTTAACTACTTATTATGAAATGTAAAT,GTTTTAACTACTTATTATGAAATGTAAAT,GTTTTAACTACTTATTATGAAATGTAAAT	29,29,29	0	0	NA	NA	I-A:I-A:I-A	28,29,29	29	Unclear	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh	NA,NA|148aa|down_5|NZ_CP045970.1_616558_617002_+,NA|492aa|down_9|NZ_CP045970.1_621312_622788_+	NA|612aa|up_9|NZ_CP045970.1_596897_598733_+	NF033186, internalin_K, class 1 internalin InlK	NA|144aa|up_8|NZ_CP045970.1_598833_599265_+	pfam00582, Usp, Universal stress protein family	NA|477aa|up_7|NZ_CP045970.1_599311_600742_-	COG2843, PgsA, Putative enzyme of poly-gamma-glutamate biosynthesis (capsule formation) [Cell envelope biogenesis, outer membrane]	NA|272aa|up_6|NZ_CP045970.1_600862_601678_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	cas6|241aa|up_5|NZ_CP045970.1_602029_602752_+	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6	cas8b2|563aa|up_4|NZ_CP045970.1_602767_604456_+	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas7|290aa|up_3|NZ_CP045970.1_604445_605315_+	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas5|261aa|up_2|NZ_CP045970.1_605292_606075_+	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas3|728aa|up_1|NZ_CP045970.1_606142_608326_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas2|93aa|up_0|NZ_CP045970.1_608628_608907_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|123aa|down_0|NZ_CP045970.1_611084_611453_-	COG3759, COG3759, Predicted membrane protein [Function unknown]	NA|472aa|down_1|NZ_CP045970.1_611599_613015_+	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|335aa|down_2|NZ_CP045970.1_613146_614151_+	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|439aa|down_3|NZ_CP045970.1_614182_615499_-	cd05296, GH4_P_beta_glucosidase, Glycoside Hydrolases Family 4; Phospho-beta-glucosidase	NA|251aa|down_4|NZ_CP045970.1_615700_616453_+	COG1737, RpiR, Transcriptional regulators [Transcription]	NA|148aa|down_5|NZ_CP045970.1_616558_617002_+	NA	NA|554aa|down_6|NZ_CP045970.1_617047_618709_-	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|444aa|down_7|NZ_CP045970.1_618964_620296_+	COG5361, COG5361, Uncharacterized conserved protein [Function unknown]	NA|247aa|down_8|NZ_CP045970.1_620342_621083_-	cd01106, HTH_TipAL-Mta, Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA	NA|492aa|down_9|NZ_CP045970.1_621312_622788_+	NA
GCF_009664755.1_ASM966475v1	NZ_CP045970	Listeria monocytogenes strain AUSMDU00000235 chromosome, complete genome	4	2569152-2569313	3	CRISPRCasFinder	no	WYL	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh	Unclear	TTTTTTTATGGAAACAACGCTCCACTTCGTTACGCCTTGTATTGGAGTTCTAGGG	55	0	0	NA	NA	NA	1	1	Orphan	csa3,DinG,cas3,WYL,casR,cas6,cas8b2,cas7,cas5,cas2,DEDDh	NA|140aa|up_6|NZ_CP045970.1_2554436_2554856_-,NA|58aa|down_3|NZ_CP045970.1_2571498_2571672_-	NA|128aa|up_9|NZ_CP045970.1_2552312_2552696_-	COG3708, COG3708, Uncharacterized protein conserved in bacteria [Function unknown]	WYL|299aa|up_8|NZ_CP045970.1_2552750_2553647_-	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|190aa|up_7|NZ_CP045970.1_2553691_2554261_-	cd06259, YdcF-like, YdcF-like	NA|140aa|up_6|NZ_CP045970.1_2554436_2554856_-	NA	NA|315aa|up_5|NZ_CP045970.1_2559751_2560696_-	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily	NA|1092aa|up_4|NZ_CP045970.1_2560756_2564032_-	COG1501, COG1501, Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]	NA|303aa|up_3|NZ_CP045970.1_2564414_2565323_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|155aa|up_2|NZ_CP045970.1_2565382_2565847_-	pfam01668, SmpB, SmpB protein	NA|794aa|up_1|NZ_CP045970.1_2565862_2568244_-	TIGR02063, Ribonuclease_R, ribonuclease R	NA|249aa|up_0|NZ_CP045970.1_2568277_2569024_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|78aa|down_0|NZ_CP045970.1_2569387_2569621_-	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|248aa|down_1|NZ_CP045970.1_2569720_2570464_-	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|240aa|down_2|NZ_CP045970.1_2570646_2571366_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|58aa|down_3|NZ_CP045970.1_2571498_2571672_-	NA	NA|431aa|down_4|NZ_CP045970.1_2571774_2573067_-	PRK00077, eno, enolase; Provisional	NA|511aa|down_5|NZ_CP045970.1_2573202_2574735_-	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|252aa|down_6|NZ_CP045970.1_2574736_2575492_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|397aa|down_7|NZ_CP045970.1_2575537_2576728_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|337aa|down_8|NZ_CP045970.1_2576862_2577873_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|349aa|down_9|NZ_CP045970.1_2577904_2578951_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
