assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009667765.1_ASM966776v1	NZ_CP043664	Salmonella enterica subsp. enterica serovar Kentucky strain 161365 chromosome, complete genome	1	100675-100769	1	CRISPRCasFinder	no	cas3	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	Unclear	ACCGGGTCTACTGGCTCAGGGTCTAC	26	0	0	NA	NA	NA	1	1	Unclear	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	NA|31aa|up_5|NZ_CP043664.1_95752_95845_+,NA|160aa|up_4|NZ_CP043664.1_96045_96525_+,NA|38aa|up_2|NZ_CP043664.1_98051_98165_+,NA|155aa|up_0|NZ_CP043664.1_99085_99550_+,NA	NA|310aa|up_9|NZ_CP043664.1_89709_90639_+	PRK09956, PRK09956, ISNCY family transposase	NA|301aa|up_8|NZ_CP043664.1_90681_91584_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|232aa|up_7|NZ_CP043664.1_92089_92785_+	PRK15385, PRK15385, MgtC family protein	NA|909aa|up_6|NZ_CP043664.1_93004_95731_+	PRK15122, PRK15122, magnesium-transporting ATPase; Provisional	NA|31aa|up_5|NZ_CP043664.1_95752_95845_+	NA	NA|160aa|up_4|NZ_CP043664.1_96045_96525_+	NA	NA|227aa|up_3|NZ_CP043664.1_96753_97434_-	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|38aa|up_2|NZ_CP043664.1_98051_98165_+	NA	NA|286aa|up_1|NZ_CP043664.1_98217_99075_+	COG3710, CadC, DNA-binding winged-HTH domains [Transcription]	NA|155aa|up_0|NZ_CP043664.1_99085_99550_+	NA	NA|206aa|down_0|NZ_CP043664.1_102571_103189_-	COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription]	NA|461aa|down_1|NZ_CP043664.1_105222_106605_+	PRK11462, PRK11462, putative transporter; Provisional	NA|773aa|down_2|NZ_CP043664.1_106616_108935_+	PRK10658, PRK10658, putative alpha-glucosidase; Provisional	NA|570aa|down_3|NZ_CP043664.1_109037_110747_-	pfam05170, AsmA, AsmA family	NA|464aa|down_4|NZ_CP043664.1_110867_112259_-	TIGR00801, Uric_acid_permease, uracil-xanthine permease	NA|402aa|down_5|NZ_CP043664.1_112486_113692_+	TIGR00210, Sodium/glutamate_symport_carrier_protein, sodium--glutamate symport carrier (gltS)	cas3|694aa|down_6|NZ_CP043664.1_113727_115809_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|230aa|down_7|NZ_CP043664.1_115814_116504_-	PRK11081, PRK11081, tRNA guanosine-2'-O-methyltransferase; Provisional	NA|704aa|down_8|NZ_CP043664.1_116508_118620_-	PRK11092, PRK11092, bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase	NA|92aa|down_9|NZ_CP043664.1_118638_118914_-	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit
GCF_009667765.1_ASM966776v1	NZ_CP043664	Salmonella enterica subsp. enterica serovar Kentucky strain 161365 chromosome, complete genome	2	619181-619281	2	CRISPRCasFinder	no		cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	Orphan	GCTTCAGTGGCGAACGTCGTGAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|448aa|up_9|NZ_CP043664.1_605259_606603_-	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|151aa|up_8|NZ_CP043664.1_607230_607683_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|501aa|up_7|NZ_CP043664.1_607710_609213_+	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|893aa|up_6|NZ_CP043664.1_609237_611916_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|134aa|up_5|NZ_CP043664.1_612136_612538_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|315aa|up_4|NZ_CP043664.1_612537_613482_+	PRK05033, truB, tRNA pseudouridine synthase B; Provisional	NA|90aa|up_3|NZ_CP043664.1_613632_613902_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|712aa|up_2|NZ_CP043664.1_614143_616279_+	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|295aa|up_1|NZ_CP043664.1_616388_617273_+	PRK11189, PRK11189, lipoprotein NlpI; Provisional	NA|27aa|up_0|NZ_CP043664.1_617378_617459_+	NF033440, small_YrbN, protein YrbN	NA|415aa|down_0|NZ_CP043664.1_619494_620739_+	PRK10483, PRK10483, tryptophan permease; Provisional	NA|336aa|down_1|NZ_CP043664.1_620829_621837_-	PRK10508, PRK10508, luciferase-like monooxygenase	NA|299aa|down_2|NZ_CP043664.1_622014_622911_-	PRK15447, PRK15447, putative protease; Provisional	NA|332aa|down_3|NZ_CP043664.1_622901_623897_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|down_4|NZ_CP043664.1_624113_624638_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|down_5|NZ_CP043664.1_624631_625135_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|106aa|down_6|NZ_CP043664.1_625121_625439_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|148aa|down_7|NZ_CP043664.1_625476_625920_+	PRK03467, PRK03467, hypothetical protein; Provisional	NA|173aa|down_8|NZ_CP043664.1_625899_626418_-	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus	NA|212aa|down_9|NZ_CP043664.1_626548_627184_+	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs
GCF_009667765.1_ASM966776v1	NZ_CP043664	Salmonella enterica subsp. enterica serovar Kentucky strain 161365 chromosome, complete genome	3	997020-999123	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	Type I-E	GTATTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTNTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	33,34,34	34	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	NA,NA|116aa|down_5|NZ_CP043664.1_1005463_1005811_+	NA|179aa|up_9|NZ_CP043664.1_985562_986099_-	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|157aa|up_8|NZ_CP043664.1_986095_986566_-	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|169aa|up_7|NZ_CP043664.1_986580_987087_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|258aa|up_6|NZ_CP043664.1_987106_987880_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|900aa|up_5|NZ_CP043664.1_987892_990592_-	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|196aa|up_4|NZ_CP043664.1_990671_991259_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_3|NZ_CP043664.1_991869_992670_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP043664.1_992897_994535_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP043664.1_994617_995916_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP043664.1_996051_996723_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|NZ_CP043664.1_999220_1000018_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|NZ_CP043664.1_1000105_1000468_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP043664.1_1000891_1002691_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP043664.1_1002690_1004403_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP043664.1_1004478_1005213_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|116aa|down_5|NZ_CP043664.1_1005463_1005811_+	NA	NA|318aa|down_6|NZ_CP043664.1_1006388_1007342_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|down_7|NZ_CP043664.1_1007725_1010425_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|down_8|NZ_CP043664.1_1010782_1012318_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|down_9|NZ_CP043664.1_1012334_1012937_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2
GCF_009667765.1_ASM966776v1	NZ_CP043664	Salmonella enterica subsp. enterica serovar Kentucky strain 161365 chromosome, complete genome	4	1016755-1018735	2,4,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	32,32,32	32	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,c2c9_V-U4	NA|116aa|up_9|NZ_CP043664.1_1005463_1005811_+,NA	NA|116aa|up_9|NZ_CP043664.1_1005463_1005811_+	NA	NA|318aa|up_8|NZ_CP043664.1_1006388_1007342_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|up_7|NZ_CP043664.1_1007725_1010425_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|up_6|NZ_CP043664.1_1010782_1012318_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|up_5|NZ_CP043664.1_1012334_1012937_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|353aa|up_4|NZ_CP043664.1_1012959_1014018_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|up_3|NZ_CP043664.1_1014027_1014753_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|235aa|up_2|NZ_CP043664.1_1014752_1015457_+	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|306aa|up_1|NZ_CP043664.1_1015456_1016374_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP043664.1_1016376_1016670_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_CP043664.1_1018749_1019796_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP043664.1_1020046_1020955_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP043664.1_1020964_1022404_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP043664.1_1022390_1022996_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|NZ_CP043664.1_1023013_1023370_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP043664.1_1023560_1023872_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP043664.1_1023890_1024601_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP043664.1_1024600_1025080_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP043664.1_1025076_1026126_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP043664.1_1026106_1026868_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
