assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009671025.1_ASM967102v1	NZ_CP046019	Xanthomonas citri pv. malvacearum strain HD-1 chromosome, complete genome	1	1083090-1083444	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no		DinG,cas3,WYL,DEDDh,csa3	Orphan	GATGCTGCCGTTGACCGTTTCCA,GCCGTTGACCGTTTCCANG,GCCGTTGACCGTTTCCA	23,19,17	0	0	NA	NA	NA:NA:NA	6,6,4	6	Orphan	DinG,cas3,WYL,DEDDh,csa3	NA|361aa|up_7|NZ_CP046019.1_1071958_1073041_-,NA|179aa|up_6|NZ_CP046019.1_1073067_1073604_-,NA|62aa|down_7|NZ_CP046019.1_1093334_1093520_-	NA|1491aa|up_9|NZ_CP046019.1_1065860_1070333_+	PRK11750, gltB, glutamate synthase subunit alpha; Provisional	NA|494aa|up_8|NZ_CP046019.1_1070464_1071946_+	TIGR01318, glutamate_synthase_small_subunit_gltD, glutamate synthase small subunit family protein, proteobacterial	NA|361aa|up_7|NZ_CP046019.1_1071958_1073041_-	NA	NA|179aa|up_6|NZ_CP046019.1_1073067_1073604_-	NA	NA|353aa|up_5|NZ_CP046019.1_1073797_1074856_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|358aa|up_4|NZ_CP046019.1_1075163_1076237_+	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5)	NA|351aa|up_3|NZ_CP046019.1_1077004_1078057_+	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5)	NA|378aa|up_2|NZ_CP046019.1_1078695_1079829_+	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5)	NA|148aa|up_1|NZ_CP046019.1_1080123_1080567_+	pfam13670, PepSY_2, Peptidase propeptide and YPEB domain	NA|599aa|up_0|NZ_CP046019.1_1080878_1082675_-	cd05660, M28_like_PA, M28 Zn-peptidase containing a protease-associated (PA) domain insert	NA|412aa|down_0|NZ_CP046019.1_1083669_1084905_+	COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	NA|509aa|down_1|NZ_CP046019.1_1085009_1086536_+	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|107aa|down_2|NZ_CP046019.1_1087628_1087949_-	pfam08850, DUF1820, Domain of unknown function (DUF1820)	NA|231aa|down_3|NZ_CP046019.1_1088057_1088750_-	pfam01694, Rhomboid, Rhomboid family	NA|465aa|down_4|NZ_CP046019.1_1090149_1091544_+	cd01184, INT_C_like_1, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain	NA|150aa|down_5|NZ_CP046019.1_1091567_1092017_-	pfam08808, RES, RES domain	NA|162aa|down_6|NZ_CP046019.1_1092017_1092503_-	TIGR02293, conserved_protein_of_unknown_function, putative toxin-antitoxin system antitoxin component, TIGR02293 family	NA|62aa|down_7|NZ_CP046019.1_1093334_1093520_-	NA	NA|347aa|down_8|NZ_CP046019.1_1093518_1094559_+	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|267aa|down_9|NZ_CP046019.1_1094558_1095359_+	PRK09183, PRK09183, transposase/IS protein; Provisional
GCF_009671025.1_ASM967102v1	NZ_CP046019	Xanthomonas citri pv. malvacearum strain HD-1 chromosome, complete genome	2	1170318-1170392	2	CRISPRCasFinder	no		DinG,cas3,WYL,DEDDh,csa3	Orphan	TTCGTAGGAGCGGCCCTGGCCGCG	24	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,WYL,DEDDh,csa3	NA|127aa|up_8|NZ_CP046019.1_1160869_1161250_+,NA|80aa|up_1|NZ_CP046019.1_1165872_1166112_+,NA|33aa|down_2|NZ_CP046019.1_1178099_1178198_-,NA|111aa|down_3|NZ_CP046019.1_1180461_1180794_-,NA|157aa|down_8|NZ_CP046019.1_1192175_1192646_-,NA|133aa|down_9|NZ_CP046019.1_1192922_1193321_+	NA|182aa|up_9|NZ_CP046019.1_1160320_1160866_+	cd00340, GSH_Peroxidase, Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate	NA|127aa|up_8|NZ_CP046019.1_1160869_1161250_+	NA	NA|352aa|up_7|NZ_CP046019.1_1161384_1162440_-	COG2853, VacJ, Surface lipoprotein [Cell envelope biogenesis, outer membrane]	NA|97aa|up_6|NZ_CP046019.1_1162450_1162741_-	COG3113, COG3113, Predicted NTP binding protein (contains STAS domain) [General function prediction only]	NA|221aa|up_5|NZ_CP046019.1_1162730_1163393_-	pfam05494, MlaC, MlaC protein	NA|182aa|up_4|NZ_CP046019.1_1163389_1163935_-	TIGR04430, OM_asym_MlaD, outer membrane lipid asymmetry maintenance protein MlaD	NA|250aa|up_3|NZ_CP046019.1_1163946_1164696_-	COG0767, Ttg2B, ABC-type transport system involved in resistance to organic solvents, permease component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|265aa|up_2|NZ_CP046019.1_1164695_1165490_-	COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]	NA|80aa|up_1|NZ_CP046019.1_1165872_1166112_+	NA	NA|1135aa|up_0|NZ_CP046019.1_1166661_1170066_+	TIGR01450, recC, exodeoxyribonuclease V, gamma subunit	NA|731aa|down_0|NZ_CP046019.1_1173841_1176034_+	TIGR01447, recD, exodeoxyribonuclease V, alpha subunit	NA|465aa|down_1|NZ_CP046019.1_1176602_1177997_+	cd02652, nuc_hydro_2, NH_2: A subgroup of nucleoside hydrolases	NA|33aa|down_2|NZ_CP046019.1_1178099_1178198_-	NA	NA|111aa|down_3|NZ_CP046019.1_1180461_1180794_-	NA	NA|600aa|down_4|NZ_CP046019.1_1182509_1184309_+	PRK08186, PRK08186, allophanate hydrolase; Provisional	NA|1216aa|down_5|NZ_CP046019.1_1184392_1188040_+	TIGR02712, Includes:_Allophanate_hydrolase, urea carboxylase	NA|526aa|down_6|NZ_CP046019.1_1188889_1190467_-	TIGR04212, conserved_hypothetical_protein, Acinetobacter rhombotarget A	NA|299aa|down_7|NZ_CP046019.1_1190803_1191700_+	cd02558, PSRA_1, Pseudouridine synthase, a subgroup of the RluA family	NA|157aa|down_8|NZ_CP046019.1_1192175_1192646_-	NA	NA|133aa|down_9|NZ_CP046019.1_1192922_1193321_+	NA
GCF_009671025.1_ASM967102v1	NZ_CP046019	Xanthomonas citri pv. malvacearum strain HD-1 chromosome, complete genome	3	1443318-1443502	3	CRISPRCasFinder	no		DinG,cas3,WYL,DEDDh,csa3	Orphan	TGCTCGGCCGAAGGGCGCACCTGCAC	26	0	0	NA	NA	NA	2	2	Orphan	DinG,cas3,WYL,DEDDh,csa3	NA|249aa|up_3|NZ_CP046019.1_1439502_1440249_+,NA|206aa|up_2|NZ_CP046019.1_1440351_1440969_+,NA	NA|171aa|up_9|NZ_CP046019.1_1431789_1432302_+	PRK05751, PRK05751, preprotein translocase subunit SecB; Validated	NA|342aa|up_8|NZ_CP046019.1_1432317_1433343_+	PRK00094, gpsA, NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA|199aa|up_7|NZ_CP046019.1_1433807_1434404_-	TIGR04273, activator_of_XA21-mediated_immunity_Ax21, sulfation-dependent quorum factor, Ax21 family	NA|576aa|up_6|NZ_CP046019.1_1434761_1436489_+	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase	NA|481aa|up_5|NZ_CP046019.1_1436538_1437981_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|449aa|up_4|NZ_CP046019.1_1437965_1439312_+	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|249aa|up_3|NZ_CP046019.1_1439502_1440249_+	NA	NA|206aa|up_2|NZ_CP046019.1_1440351_1440969_+	NA	NA|410aa|up_1|NZ_CP046019.1_1441061_1442291_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|159aa|up_0|NZ_CP046019.1_1442639_1443116_-	cd18094, SpoU-like_TrmL, SAM-dependent tRNA methylase related to TrmL	NA|107aa|down_0|NZ_CP046019.1_1443990_1444311_+	pfam13698, DUF4156, Domain of unknown function (DUF4156)	NA|339aa|down_1|NZ_CP046019.1_1444412_1445429_+	PRK09258, PRK09258, 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed	NA|301aa|down_2|NZ_CP046019.1_1446825_1447728_+	PRK00870, PRK00870, haloalkane dehalogenase; Provisional	NA|128aa|down_3|NZ_CP046019.1_1447880_1448264_-	COG0727, COG0727, Predicted Fe-S-cluster oxidoreductase [General function prediction only]	NA|554aa|down_4|NZ_CP046019.1_1448586_1450248_+	PRK09274, PRK09274, peptide synthase; Provisional	NA|337aa|down_5|NZ_CP046019.1_1450478_1451489_+	cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs	NA|53aa|down_6|NZ_CP046019.1_1451553_1451712_+	COG5487, COG5487, Small integral membrane protein [Function unknown]	NA|368aa|down_7|NZ_CP046019.1_1452297_1453401_-	PRK01966, ddl, D-alanine--D-alanine ligase	NA|215aa|down_8|NZ_CP046019.1_1453594_1454239_+	COG3165, COG3165, Uncharacterized protein conserved in bacteria [Function unknown]	NA|558aa|down_9|NZ_CP046019.1_1454235_1455909_+	PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB; Reviewed
GCF_009671025.1_ASM967102v1	NZ_CP046019	Xanthomonas citri pv. malvacearum strain HD-1 chromosome, complete genome	4	3453797-3453891	4	CRISPRCasFinder	no		DinG,cas3,WYL,DEDDh,csa3	Orphan	GGGTCGGCATCCATTTCTGCCAG	23	0	0	NA	NA	NA	1	1	Orphan	DinG,cas3,WYL,DEDDh,csa3	NA|76aa|up_5|NZ_CP046019.1_3446709_3446937_+,NA|178aa|up_4|NZ_CP046019.1_3447003_3447537_-,NA|335aa|down_8|NZ_CP046019.1_3467606_3468611_+	NA|791aa|up_9|NZ_CP046019.1_3437989_3440362_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|254aa|up_8|NZ_CP046019.1_3440375_3441137_-	pfam13557, Phenol_MetA_deg, Putative MetA-pathway of phenol degradation	NA|912aa|up_7|NZ_CP046019.1_3441434_3444170_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|726aa|up_6|NZ_CP046019.1_3444295_3446473_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|76aa|up_5|NZ_CP046019.1_3446709_3446937_+	NA	NA|178aa|up_4|NZ_CP046019.1_3447003_3447537_-	NA	NA|764aa|up_3|NZ_CP046019.1_3447855_3450147_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|669aa|up_2|NZ_CP046019.1_3450385_3452392_-	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]	NA|122aa|up_1|NZ_CP046019.1_3452425_3452791_-	cd17562, REC_CheY4-like, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY4 and similar CheY family proteins	NA|103aa|up_0|NZ_CP046019.1_3452787_3453096_-	pfam13466, STAS_2, STAS domain	NA|261aa|down_0|NZ_CP046019.1_3454469_3455252_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|325aa|down_1|NZ_CP046019.1_3455253_3456228_-	PRK09038, PRK09038, flagellar motor protein MotD; Reviewed	NA|247aa|down_2|NZ_CP046019.1_3456234_3456975_-	PRK09109, motC, flagellar motor protein; Reviewed	NA|1014aa|down_3|NZ_CP046019.1_3458293_3461335_+	TIGR01782, TonB-dependent_receptor, TonB-dependent receptor	NA|364aa|down_4|NZ_CP046019.1_3462035_3463127_+	pfam13614, AAA_31, AAA domain	NA|243aa|down_5|NZ_CP046019.1_3463150_3463879_+	pfam13643, DUF4145, Domain of unknown function (DUF4145)	NA|363aa|down_6|NZ_CP046019.1_3465022_3466110_+	pfam00665, rve, Integrase core domain	NA|233aa|down_7|NZ_CP046019.1_3466171_3466870_+	pfam14022, DUF4238, Protein of unknown function (DUF4238)	NA|335aa|down_8|NZ_CP046019.1_3467606_3468611_+	NA	NA|363aa|down_9|NZ_CP046019.1_3469054_3470142_+	pfam00665, rve, Integrase core domain
