The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP040436	Stenotrophomonas maltophilia strain PEG-390 chromosome, complete genome	4554024	573185	582150	4554024		Enterobacteria_phage(42.86%)	7	NA	NA
WP_155028923.1|573185_574241_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	46.2	3.2e-79
WP_021202693.1|574255_575143_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	58.5	1.1e-96
WP_057496705.1|575139_575712_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	51.1	1.2e-45
WP_019660972.1|575708_576602_+	dTDP-4-dehydrorhamnose reductase	NA	A0A1D7XFA3	Escherichia_phage	36.5	4.8e-28
WP_155028924.1|576677_578081_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	29.1	6.5e-48
WP_019660974.1|578093_579440_-	phosphomannomutase/phosphoglucomutase	NA	A0A127AWJ1	Bacillus_phage	26.3	2.9e-29
WP_155030408.1|579483_582150_-	helicase	NA	A8C6A2	Antheraea_pernyi_nuclear_polyhedrosis_virus	30.5	1.1e-48
>prophage 2
NZ_CP040436	Stenotrophomonas maltophilia strain PEG-390 chromosome, complete genome	4554024	918425	975063	4554024	tail,capsid,terminase,protease,integrase	Rhizobium_phage(25.0%)	64	922286:922311	986669:986694
WP_155029013.1|918425_920072_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_019659535.1|920214_920505_+	glutaredoxin 3	NA	A0A2L0UZG6	Agrobacterium_phage	41.7	3.4e-07
WP_005408260.1|920501_920894_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA	NA
WP_012479261.1|921218_922223_+	isocitrate dehydrogenase	NA	NA	NA	NA	NA
922286:922311	attL	GGTAGATCCACGCCATGCGTGGATGA	NA	NA	NA	NA
WP_155029014.1|922423_923167_+	isochorismatase family protein	NA	NA	NA	NA	NA
WP_155029015.1|923220_924129_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_021202979.1|924207_924966_-	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA	NA
WP_155029016.1|926263_926632_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004154551.1|926912_928157_-|integrase	site-specific integrase	integrase	A0A0F7L7C7	uncultured_marine_virus	27.9	2.8e-10
WP_109337022.1|928223_928595_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004154554.1|929369_929726_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155029017.1|929892_930660_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004154555.1|930656_931124_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004154556.1|931594_931855_-	hypothetical protein	NA	NA	NA	NA	NA
WP_150359510.1|932070_932670_-	hypothetical protein	NA	Q8HAP4	Burkholderia_phage	41.1	1.7e-13
WP_155029018.1|932973_933135_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080354124.1|934846_935437_+	response regulator	NA	NA	NA	NA	NA
WP_004154560.1|935458_935911_-	hypothetical protein	NA	Q7Y5G6	Xanthomonas_virus	32.9	1.1e-09
WP_049397869.1|935907_936216_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049397868.1|936212_936659_-	lysozyme	NA	A0A2P9FI97	Pseudomonas_phage	52.3	5.0e-26
WP_049434054.1|936655_936847_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_004154562.1|936855_938529_-|terminase	phage terminase large subunit	terminase	A0A2R2ZGE7	Ralstonia_phage	56.7	5.6e-179
WP_155029019.1|938528_938774_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005412393.1|938770_939040_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155029020.1|939066_939552_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049434056.1|939551_942365_-	hypothetical protein	NA	A0A142EZL1	Stenotrophomonas_phage	42.7	5.5e-38
WP_155029021.1|942390_944928_-	DUF1983 domain-containing protein	NA	NA	NA	NA	NA
WP_155029022.1|944967_948132_-	hypothetical protein	NA	L7TQZ1	Rhizobium_phage	23.6	4.3e-47
WP_155029023.1|948138_950313_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049397861.1|950316_950715_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155029024.1|950747_951221_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155029025.1|951217_953350_-	hypothetical protein	NA	L7TLW2	Rhizobium_phage	31.5	1.6e-66
WP_155029026.1|953349_953940_-	hypothetical protein	NA	A0A2R2ZGD2	Ralstonia_phage	42.4	4.6e-27
WP_004154574.1|954039_954993_-|capsid	Major capsid protein 10A	capsid	L7TJ83	Rhizobium_phage	42.4	7.1e-62
WP_004154576.1|955019_955805_-|capsid	capsid assembly protein	capsid	A0A1B1IVZ8	uncultured_Mediterranean_phage	30.6	1.4e-20
WP_004154577.1|955804_955948_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004154578.1|955964_957521_-|tail	Head-to-tail joining protein	tail	L7TJ79	Rhizobium_phage	37.6	1.5e-85
WP_005412406.1|957513_957666_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004154580.1|957686_957866_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004154581.1|957930_958467_-	adenylate kinase	NA	A0A2H4J8A1	uncultured_Caudovirales_phage	46.1	1.4e-30
WP_155029027.1|958562_958880_+	hypothetical protein	NA	NA	NA	NA	NA
WP_049397854.1|958883_959090_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004154583.1|959077_959911_-	hypothetical protein	NA	M1HMA9	Pelagibacter_phage	36.0	2.0e-36
WP_004154584.1|959907_960057_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049434075.1|960053_960344_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004154585.1|960340_960589_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004154586.1|960739_961105_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050483582.1|961101_961440_-	hypothetical protein	NA	A0A2H4P845	Pseudomonas_phage	53.2	9.6e-22
WP_004154587.1|961421_963296_-	DNA polymerase I	NA	A0A076YNV1	Mesorhizobium_phage	48.2	1.7e-160
WP_155029028.1|963308_963965_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004154588.1|963975_964224_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004154589.1|964389_966021_-	toprim domain-containing protein	NA	L7TLT7	Rhizobium_phage	56.6	3.7e-151
WP_004154591.1|966007_966187_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080101784.1|966183_966585_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004154593.1|966581_966944_-	putative N-acetylmuramoyl-L-alanine amidase	NA	I6Q9Z5	Yersinia_phage	40.6	2.5e-15
WP_004154594.1|966944_967424_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A2I7QZP6	Vibrio_phage	31.1	1.4e-05
WP_004154595.1|967365_968031_-	hypothetical protein	NA	A0A076YJ33	Mesorhizobium_phage	40.9	1.5e-26
WP_154267700.1|968030_968189_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005412421.1|968188_968473_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005412422.1|968465_968609_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155029029.1|968653_971089_-	T3/T7 RNA polymerase	NA	L7TQW5	Rhizobium_phage	40.3	4.0e-162
WP_019659529.1|971650_972946_+	trigger factor	NA	NA	NA	NA	NA
WP_019659528.1|973020_973647_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	57.9	5.9e-57
WP_049466059.1|973773_975063_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	58.0	2.2e-135
986669:986694	attR	TCATCCACGCATGGCGTGGATCTACC	NA	NA	NA	NA
>prophage 3
NZ_CP040436	Stenotrophomonas maltophilia strain PEG-390 chromosome, complete genome	4554024	1733665	1764280	4554024	tail,transposase,integrase	Pseudomonas_phage(56.52%)	35	1732726:1732740	1764776:1764790
1732726:1732740	attL	CCATGTCTTCGCGCA	NA	NA	NA	NA
WP_155029293.1|1733665_1734427_-	DNA adenine methylase	NA	Q5ZQW7	Pseudomonas_phage	56.2	4.0e-76
WP_155029294.1|1734590_1735358_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155029295.1|1735363_1737736_-	hypothetical protein	NA	J9RWA5	Pseudomonas_phage	39.1	5.7e-137
WP_155029296.1|1737614_1737842_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155029297.1|1737841_1738072_-	hypothetical protein	NA	A0A0S0MV97	Pseudomonas_phage	62.7	8.8e-19
WP_155029298.1|1738084_1738912_-	DUF2163 domain-containing protein	NA	D2K0A8	Staphylococcus_phage	32.4	2.0e-36
WP_155029299.1|1738863_1740567_-	hypothetical protein	NA	A0SMQ4	Pseudomonas_virus	42.0	3.0e-111
WP_155029300.1|1740566_1741547_-	hypothetical protein	NA	J9SVR7	Pseudomonas_phage	27.8	2.5e-06
WP_155029301.1|1741550_1742528_-	hypothetical protein	NA	A0A2D2W2D5	Stenotrophomonas_phage	28.2	2.4e-17
WP_155030424.1|1742530_1746067_-|tail	phage tail tape-measure protein	tail	A0A1V0E8B0	Vibrio_phage	25.0	1.6e-21
WP_155029302.1|1746214_1746733_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155029303.1|1746732_1747497_-	hypothetical protein	NA	Q5ZQX2	Pseudomonas_phage	47.0	7.2e-57
WP_155029304.1|1747499_1747661_-	hypothetical protein	NA	NA	NA	NA	NA
WP_088610836.1|1747657_1748137_-	hypothetical protein	NA	A0A0S4L2X9	Pseudomonas_phage	45.8	4.0e-29
WP_155029305.1|1748133_1748664_-	DUF1320 domain-containing protein	NA	Q5ZQX5	Pseudomonas_phage	44.8	2.9e-33
WP_155029306.1|1748671_1749145_-	hypothetical protein	NA	NA	NA	NA	NA
WP_125892632.1|1749306_1750254_-	hypothetical protein	NA	R9U4B8	Rhizobium_phage	45.6	1.5e-72
WP_155029307.1|1750307_1750667_-	DUF2190 domain-containing protein	NA	NA	NA	NA	NA
WP_155029308.1|1750731_1751886_-	peptidase	NA	Q5ZQY0	Pseudomonas_phage	50.7	2.2e-73
WP_155029309.1|1752111_1752687_-	phage virion morphogenesis protein	NA	A0A2H4J9E5	uncultured_Caudovirales_phage	52.4	3.4e-35
WP_155029310.1|1752686_1753961_-	hypothetical protein	NA	J9STS2	Pseudomonas_phage	61.2	6.1e-85
WP_155029311.1|1753964_1755485_-	DUF935 family protein	NA	Q5ZQY4	Pseudomonas_phage	56.5	3.4e-159
WP_155029312.1|1755481_1757218_-	hypothetical protein	NA	A0A219VH72	Ochrobactrum_phage	43.5	5.2e-103
WP_046428350.1|1757218_1757776_-	DUF3486 family protein	NA	A4JWJ3	Burkholderia_virus	47.6	7.3e-35
WP_046428353.1|1757780_1758077_-	hypothetical protein	NA	A0A0S4L0A3	Pseudomonas_phage	62.2	1.2e-31
WP_046428354.1|1758084_1758399_-	hypothetical protein	NA	Q5ZQY8	Pseudomonas_phage	35.8	1.4e-11
WP_155029313.1|1758395_1758749_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155029314.1|1758657_1759140_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155029315.1|1759136_1759868_-	hypothetical protein	NA	J9Q7Y7	Salmonella_phage	50.6	1.1e-35
WP_155029316.1|1760069_1760453_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155029317.1|1760473_1760992_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155029318.1|1761021_1761234_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155029319.1|1761230_1761539_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155029320.1|1761554_1762472_+	hypothetical protein	NA	Q5ZR03	Pseudomonas_phage	33.0	6.9e-22
WP_155029321.1|1762474_1764280_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	Q6QIE0	Burkholderia_phage	43.8	3.8e-125
1764776:1764790	attR	TGCGCGAAGACATGG	NA	NA	NA	NA
