assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009676505.1_ASM967650v1	NZ_CP040436	Stenotrophomonas maltophilia strain PEG-390 chromosome, complete genome	1	2677244-2677324	1	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,Cas9_archaeal,DinG	Orphan	GCCTACGGCACTGCCGAGATTGCC	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,Cas9_archaeal,DinG	NA|97aa|up_1|NZ_CP040436.1_2672414_2672705_-,NA	NA|118aa|up_9|NZ_CP040436.1_2663723_2664077_-	PRK10452, PRK10452, multidrug/spermidine efflux SMR transporter subunit MdtJ	NA|284aa|up_8|NZ_CP040436.1_2664228_2665080_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|307aa|up_7|NZ_CP040436.1_2665148_2666069_-	cd06231, M14_REP34-like, Peptidase M14-like domain similar to rapid encystment phenotype 34 (REP34)	NA|694aa|up_6|NZ_CP040436.1_2666200_2668282_+	COG4772, FecA, Outer membrane receptor for Fe3+-dicitrate [Inorganic ion transport and metabolism]	NA|605aa|up_5|NZ_CP040436.1_2668302_2670117_+	cd00400, Voltage_gated_ClC, CLC voltage-gated chloride channel	NA|239aa|up_4|NZ_CP040436.1_2670245_2670962_+	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|136aa|up_3|NZ_CP040436.1_2671034_2671442_-	cd04781, HTH_MerR-like_sg6, Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily	NA|276aa|up_2|NZ_CP040436.1_2671505_2672333_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|97aa|up_1|NZ_CP040436.1_2672414_2672705_-	NA	NA|279aa|up_0|NZ_CP040436.1_2672824_2673661_-	PRK10808, PRK10808, outer membrane protein A; Reviewed	NA|327aa|down_0|NZ_CP040436.1_2678967_2679948_-	pfam12833, HTH_18, Helix-turn-helix domain	NA|64aa|down_1|NZ_CP040436.1_2680632_2680824_+	COG3847, Flp, Flp pilus assembly protein, pilin Flp [Intracellular trafficking and secretion]	NA|182aa|down_2|NZ_CP040436.1_2680891_2681437_+	COG4960, CpaA, Flp pilus assembly protein, protease CpaA [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|159aa|down_3|NZ_CP040436.1_2681433_2681910_+	pfam07811, TadE, TadE-like protein	NA|346aa|down_4|NZ_CP040436.1_2681933_2682971_+	TIGR03177, pilus_cpaB, Flp pilus assembly protein CpaB	NA|453aa|down_5|NZ_CP040436.1_2682989_2684348_+	COG4964, CpaC, Flp pilus assembly protein, secretin CpaC [Intracellular trafficking and secretion]	NA|419aa|down_6|NZ_CP040436.1_2684375_2685632_+	cd03111, CpaE-like, pilus assembly ATPase CpaE	NA|450aa|down_7|NZ_CP040436.1_2685616_2686966_+	COG4962, CpaF, Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]	NA|319aa|down_8|NZ_CP040436.1_2686968_2687925_+	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|312aa|down_9|NZ_CP040436.1_2687950_2688886_+	COG2064, TadC, Flp pilus assembly protein TadC [Cell motility and secretion / Intracellular trafficking and secretion]
GCF_009676505.1_ASM967650v1	NZ_CP040436	Stenotrophomonas maltophilia strain PEG-390 chromosome, complete genome	2	3594560-3594674	2	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,Cas9_archaeal,DinG	Orphan	GAGCGGTGCGAACCAAGGTTCGCACCCACC	30	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,Cas9_archaeal,DinG	NA|94aa|up_3|NZ_CP040436.1_3591320_3591602_+,NA|144aa|down_6|NZ_CP040436.1_3604433_3604865_-	NA|618aa|up_9|NZ_CP040436.1_3584883_3586737_-	cd01847, Triacylglycerol_lipase_like, Triacylglycerol lipase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases	NA|67aa|up_8|NZ_CP040436.1_3586944_3587145_+	PRK05659, PRK05659, sulfur carrier protein ThiS; Validated	NA|265aa|up_7|NZ_CP040436.1_3587251_3588046_+	PRK00208, thiG, thiazole synthase; Reviewed	NA|245aa|up_6|NZ_CP040436.1_3588045_3588780_+	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|616aa|up_5|NZ_CP040436.1_3588807_3590655_+	cd01115, SLC13_permease, Permease SLC13 (solute carrier 13)	NA|112aa|up_4|NZ_CP040436.1_3590806_3591142_-	cd03467, Rieske, Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes	NA|94aa|up_3|NZ_CP040436.1_3591320_3591602_+	NA	NA|239aa|up_2|NZ_CP040436.1_3591677_3592394_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|135aa|up_1|NZ_CP040436.1_3592448_3592853_+	PRK00567, mscL, large-conductance mechanosensitive channel protein MscL	NA|474aa|up_0|NZ_CP040436.1_3593097_3594519_+	cd03883, M28_Pgcp_like, M28 Zn-Peptidase Plasma glutamate carboxypeptidase	NA|278aa|down_0|NZ_CP040436.1_3594683_3595517_-	PRK10864, PRK10864, putative methyltransferase; Provisional	NA|504aa|down_1|NZ_CP040436.1_3595517_3597029_-	pfam01235, Na_Ala_symp, Sodium:alanine symporter family	NA|199aa|down_2|NZ_CP040436.1_3597208_3597805_-	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis]	NA|1042aa|down_3|NZ_CP040436.1_3597797_3600923_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|369aa|down_4|NZ_CP040436.1_3600919_3602026_-	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|688aa|down_5|NZ_CP040436.1_3602297_3604361_-	TIGR01778, TonB-copper, TonB-dependent copper receptor	NA|144aa|down_6|NZ_CP040436.1_3604433_3604865_-	NA	NA|328aa|down_7|NZ_CP040436.1_3605466_3606450_-	PRK12680, PRK12680, LysR family transcriptional regulator	NA|320aa|down_8|NZ_CP040436.1_3606656_3607616_+	TIGR01139, Cysteine_synthase, cysteine synthase A	NA|200aa|down_9|NZ_CP040436.1_3607829_3608429_+	cd02908, Macro_OAADPr_deacetylase, macrodomain, O-acetyl-ADP-ribose (OAADPr) family
GCF_009676505.1_ASM967650v1	NZ_CP040436	Stenotrophomonas maltophilia strain PEG-390 chromosome, complete genome	3	3905509-3905623	3	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,Cas9_archaeal,DinG	Orphan	GTTGCCGGCCAGCGGCCGGCACTACCGGGGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,Cas9_archaeal,DinG	NA,NA|244aa|down_3|NZ_CP040436.1_3909810_3910542_-,NA|87aa|down_7|NZ_CP040436.1_3914226_3914487_+,NA|112aa|down_8|NZ_CP040436.1_3914562_3914898_+	NA|237aa|up_9|NZ_CP040436.1_3893301_3894012_-	PRK14342, PRK14342, lipoyl(octanoyl) transferase LipB	NA|93aa|up_8|NZ_CP040436.1_3893999_3894278_-	PRK00907, PRK00907, hypothetical protein; Provisional	NA|358aa|up_7|NZ_CP040436.1_3894541_3895615_+	pfam09982, DUF2219, Uncharacterized protein conserved in bacteria (DUF2219)	NA|407aa|up_6|NZ_CP040436.1_3895853_3897074_-	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]	NA|424aa|up_5|NZ_CP040436.1_3897174_3898446_-	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]	NA|382aa|up_4|NZ_CP040436.1_3898442_3899588_-	TIGR02282, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase B	NA|365aa|up_3|NZ_CP040436.1_3900572_3901667_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|371aa|up_2|NZ_CP040436.1_3901815_3902928_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|691aa|up_1|NZ_CP040436.1_3902924_3904997_-	TIGR03423, pbp2_mrdA, penicillin-binding protein 2	NA|162aa|up_0|NZ_CP040436.1_3905000_3905486_-	COG2891, MreD, Cell shape-determining protein [Cell envelope biogenesis, outer membrane]	NA|349aa|down_0|NZ_CP040436.1_3906701_3907748_-	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional	NA|313aa|down_1|NZ_CP040436.1_3908031_3908970_+	cd01942, ribokinase_group_A, Ribokinase-like subgroup A	NA|207aa|down_2|NZ_CP040436.1_3909190_3909811_-	COG0546, Gph, Predicted phosphatases [General function prediction only]	NA|244aa|down_3|NZ_CP040436.1_3909810_3910542_-	NA	NA|643aa|down_4|NZ_CP040436.1_3910669_3912598_-	cd09599, M1_LTA4H, Peptidase M1 family including Leukotriene A4 hydrolase catalytic domain	NA|254aa|down_5|NZ_CP040436.1_3912733_3913495_-	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA|151aa|down_6|NZ_CP040436.1_3913575_3914028_+	cd01285, nucleoside_deaminase, Nucleoside deaminases include adenosine, guanine and cytosine deaminases	NA|87aa|down_7|NZ_CP040436.1_3914226_3914487_+	NA	NA|112aa|down_8|NZ_CP040436.1_3914562_3914898_+	NA	NA|141aa|down_9|NZ_CP040436.1_3914965_3915388_+	pfam04120, Iron_permease, Low affinity iron permease
GCF_009676505.1_ASM967650v1	NZ_CP040436	Stenotrophomonas maltophilia strain PEG-390 chromosome, complete genome	4	4359584-4359684	4	CRISPRCasFinder	no		cas3,csa3,WYL,DEDDh,Cas9_archaeal,DinG	Orphan	TTGCCGGCCAGCGGCCGGCATTACC	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,WYL,DEDDh,Cas9_archaeal,DinG	NA|85aa|up_8|NZ_CP040436.1_4350583_4350838_-,NA|130aa|down_7|NZ_CP040436.1_4367868_4368258_+,NA|87aa|down_9|NZ_CP040436.1_4368976_4369237_-	NA|334aa|up_9|NZ_CP040436.1_4349498_4350500_+	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]	NA|85aa|up_8|NZ_CP040436.1_4350583_4350838_-	NA	NA|266aa|up_7|NZ_CP040436.1_4350916_4351714_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|237aa|up_6|NZ_CP040436.1_4351813_4352524_+	pfam01797, Y1_Tnp, Transposase IS200 like	NA|395aa|up_5|NZ_CP040436.1_4352548_4353733_-	COG1668, NatB, ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism]	NA|249aa|up_4|NZ_CP040436.1_4353729_4354476_-	COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]	NA|509aa|up_3|NZ_CP040436.1_4354472_4355999_-	pfam08386, Abhydrolase_4, TAP-like protein	NA|176aa|up_2|NZ_CP040436.1_4356295_4356823_+	pfam06718, DUF1203, Protein of unknown function (DUF1203)	NA|391aa|up_1|NZ_CP040436.1_4357014_4358187_+	COG3397, COG3397, Uncharacterized protein conserved in bacteria [Function unknown]	NA|391aa|up_0|NZ_CP040436.1_4358365_4359538_+	COG3397, COG3397, Uncharacterized protein conserved in bacteria [Function unknown]	NA|250aa|down_0|NZ_CP040436.1_4359689_4360439_-	cd06195, FNR1, Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin	NA|323aa|down_1|NZ_CP040436.1_4360523_4361492_+	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|264aa|down_2|NZ_CP040436.1_4361488_4362280_+	PRK15066, PRK15066, inner membrane transport permease; Provisional	NA|313aa|down_3|NZ_CP040436.1_4362438_4363377_+	PRK12921, PRK12921, oxidoreductase	NA|309aa|down_4|NZ_CP040436.1_4363373_4364300_+	cd05266, SDR_a4, atypical (a) SDRs, subgroup 4	NA|266aa|down_5|NZ_CP040436.1_4364378_4365176_-	PRK10425, PRK10425, 3'-5' ssDNA/RNA exonuclease TatD	NA|835aa|down_6|NZ_CP040436.1_4365243_4367748_+	TIGR01970, ATP-dependent_RNA_helicase_HrpB, ATP-dependent helicase HrpB	NA|130aa|down_7|NZ_CP040436.1_4367868_4368258_+	NA	NA|180aa|down_8|NZ_CP040436.1_4368348_4368888_-	cd02566, PseudoU_synth_RluE, Pseudouridine synthase, Escherichia coli RluE	NA|87aa|down_9|NZ_CP040436.1_4368976_4369237_-	NA
