assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009676545.1_ASM967654v1	NZ_CP040437	Stenotrophomonas maltophilia strain PEG-305 chromosome, complete genome	1	822816-822924	1	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	Orphan	TTTGCCGGCCAGCGGCCGGCACTACCCCC	29	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	NA|109aa|up_3|NZ_CP040437.1_819988_820315_-,NA|140aa|down_0|NZ_CP040437.1_822959_823379_-	NA|185aa|up_9|NZ_CP040437.1_813566_814121_-	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	NA|317aa|up_8|NZ_CP040437.1_814117_815068_-	PRK05755, PRK05755, DNA polymerase I; Provisional	NA|194aa|up_7|NZ_CP040437.1_815064_815646_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|774aa|up_6|NZ_CP040437.1_815977_818299_+	pfam07793, DUF1631, Protein of unknown function (DUF1631)	NA|360aa|up_5|NZ_CP040437.1_818351_819431_+	cd05304, Rubrum_tdh, Rubrum transdehydrogenase NAD-binding and catalytic domains	NA|154aa|up_4|NZ_CP040437.1_819523_819985_-	pfam11304, DUF3106, Protein of unknown function (DUF3106)	NA|109aa|up_3|NZ_CP040437.1_819988_820315_-	NA	NA|195aa|up_2|NZ_CP040437.1_820311_820896_-	PRK09047, PRK09047, RNA polymerase factor sigma-70; Validated	NA|107aa|up_1|NZ_CP040437.1_820993_821314_+	pfam12769, PNTB_4TM, 4TM region of pyridine nucleotide transhydrogenase, mitoch	NA|487aa|up_0|NZ_CP040437.1_821310_822771_+	pfam02233, PNTB, NAD(P) transhydrogenase beta subunit	NA|140aa|down_0|NZ_CP040437.1_822959_823379_-	NA	NA|184aa|down_1|NZ_CP040437.1_823501_824053_+	TIGR03406, FeS_long_SufT, probable FeS assembly SUF system protein SufT	NA|365aa|down_2|NZ_CP040437.1_824112_825207_+	PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional	NA|581aa|down_3|NZ_CP040437.1_825662_827405_+	cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13	NA|162aa|down_4|NZ_CP040437.1_827493_827979_-	COG0252, AnsB, L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]	NA|112aa|down_5|NZ_CP040437.1_828058_828394_-	pfam09842, DUF2069, Predicted membrane protein (DUF2069)	NA|198aa|down_6|NZ_CP040437.1_828390_828984_-	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|425aa|down_7|NZ_CP040437.1_829061_830336_+	PRK04214, rbn, ribonuclease BN/unknown domain fusion protein; Reviewed	NA|192aa|down_8|NZ_CP040437.1_830332_830908_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|261aa|down_9|NZ_CP040437.1_831561_832344_-	TIGR03707, PPK2_P_aer, polyphosphate kinase 2, PA0141 family
GCF_009676545.1_ASM967654v1	NZ_CP040437	Stenotrophomonas maltophilia strain PEG-305 chromosome, complete genome	2	3170921-3171023	2	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	Orphan	TGCCGACCTGGGTCGGCACCGCC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	NA,NA	NA|165aa|up_9|NZ_CP040437.1_3161539_3162034_+	COG3865, COG3865, Uncharacterized protein conserved in bacteria [Function unknown]	NA|528aa|up_8|NZ_CP040437.1_3162109_3163693_+	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]	NA|224aa|up_7|NZ_CP040437.1_3163784_3164456_-	COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]	NA|103aa|up_6|NZ_CP040437.1_3164549_3164858_-	COG3695, COG3695, Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|307aa|up_5|NZ_CP040437.1_3164884_3165805_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|453aa|up_4|NZ_CP040437.1_3165905_3167264_-	PRK06116, PRK06116, glutathione reductase; Validated	NA|415aa|up_3|NZ_CP040437.1_3167447_3168692_-	COG2311, COG2311, Predicted membrane protein [Function unknown]	NA|161aa|up_2|NZ_CP040437.1_3168791_3169274_-	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]	NA|180aa|up_1|NZ_CP040437.1_3169385_3169925_+	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|258aa|up_0|NZ_CP040437.1_3170056_3170830_+	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|445aa|down_0|NZ_CP040437.1_3171136_3172471_-	pfam00375, SDF, Sodium:dicarboxylate symporter family	NA|569aa|down_1|NZ_CP040437.1_3172624_3174331_+	smart00098, alkPPc, Alkaline phosphatase homologues	NA|182aa|down_2|NZ_CP040437.1_3174327_3174873_+	pfam14903, WG_beta_rep, WG containing repeat	NA|445aa|down_3|NZ_CP040437.1_3175366_3176701_+	PRK10660, tilS, tRNA(Ile)-lysidine synthetase; Provisional	NA|87aa|down_4|NZ_CP040437.1_3176737_3176998_+	PRK00977, PRK00977, exodeoxyribonuclease VII small subunit; Provisional	NA|293aa|down_5|NZ_CP040437.1_3176987_3177866_+	PRK10581, PRK10581, (2E,6E)-farnesyl diphosphate synthase	NA|124aa|down_6|NZ_CP040437.1_3177955_3178327_-	pfam09685, DUF4870, Domain of unknown function (DUF4870)	NA|456aa|down_7|NZ_CP040437.1_3178414_3179782_-	PRK11040, PRK11040, peptidase PmbA; Provisional	NA|196aa|down_8|NZ_CP040437.1_3179850_3180438_+	PRK05255, PRK05255, ribosome-associated protein	NA|482aa|down_9|NZ_CP040437.1_3180479_3181925_-	PRK10735, tldD, protease TldD; Provisional
GCF_009676545.1_ASM967654v1	NZ_CP040437	Stenotrophomonas maltophilia strain PEG-305 chromosome, complete genome	3	3510319-3510418	3	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	Orphan	GGTTGCCGGCCAGCGGCCGGCACTACCAAAGCG	33	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	NA,NA|129aa|down_0|NZ_CP040437.1_3510438_3510825_-,NA|154aa|down_3|NZ_CP040437.1_3513482_3513944_-,NA|157aa|down_4|NZ_CP040437.1_3514059_3514530_-,NA|160aa|down_5|NZ_CP040437.1_3514627_3515107_-,NA|81aa|down_7|NZ_CP040437.1_3516341_3516584_-,NA|168aa|down_8|NZ_CP040437.1_3516730_3517234_+	NA|292aa|up_9|NZ_CP040437.1_3498417_3499293_-	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|390aa|up_8|NZ_CP040437.1_3499317_3500487_-	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|538aa|up_7|NZ_CP040437.1_3500892_3502506_+	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS	NA|458aa|up_6|NZ_CP040437.1_3502560_3503934_+	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|577aa|up_5|NZ_CP040437.1_3504319_3506050_-	TIGR02538, Type_IV_pilus_assembly_protein_PilF, type IV-A pilus assembly ATPase PilB	NA|136aa|up_4|NZ_CP040437.1_3506274_3506682_-	COG4969, PilA, Tfp pilus assembly protein, major pilin PilA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|136aa|up_3|NZ_CP040437.1_3506797_3507205_-	COG4969, PilA, Tfp pilus assembly protein, major pilin PilA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|420aa|up_2|NZ_CP040437.1_3507559_3508819_+	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]	NA|288aa|up_1|NZ_CP040437.1_3508826_3509690_+	COG1989, PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]	NA|204aa|up_0|NZ_CP040437.1_3509701_3510313_+	PRK00081, coaE, dephospho-CoA kinase; Reviewed	NA|129aa|down_0|NZ_CP040437.1_3510438_3510825_-	NA	NA|457aa|down_1|NZ_CP040437.1_3511309_3512680_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|226aa|down_2|NZ_CP040437.1_3512642_3513320_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|154aa|down_3|NZ_CP040437.1_3513482_3513944_-	NA	NA|157aa|down_4|NZ_CP040437.1_3514059_3514530_-	NA	NA|160aa|down_5|NZ_CP040437.1_3514627_3515107_-	NA	NA|293aa|down_6|NZ_CP040437.1_3515365_3516244_-	PRK10446, PRK10446, 30S ribosomal protein S6--L-glutamate ligase	NA|81aa|down_7|NZ_CP040437.1_3516341_3516584_-	NA	NA|168aa|down_8|NZ_CP040437.1_3516730_3517234_+	NA	NA|612aa|down_9|NZ_CP040437.1_3517518_3519354_-	cd01847, Triacylglycerol_lipase_like, Triacylglycerol lipase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases
GCF_009676545.1_ASM967654v1	NZ_CP040437	Stenotrophomonas maltophilia strain PEG-305 chromosome, complete genome	4	3824533-3824641	4	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	Orphan	GCCGGCCAGTGGCCGGCACTACCGG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	NA,NA|244aa|down_3|NZ_CP040437.1_3828758_3829490_-,NA|83aa|down_4|NZ_CP040437.1_3830381_3830630_+,NA|87aa|down_8|NZ_CP040437.1_3834430_3834691_+,NA|109aa|down_9|NZ_CP040437.1_3834765_3835092_+	NA|237aa|up_9|NZ_CP040437.1_3812259_3812970_-	PRK14342, PRK14342, lipoyl(octanoyl) transferase LipB	NA|93aa|up_8|NZ_CP040437.1_3812957_3813236_-	PRK00907, PRK00907, hypothetical protein; Provisional	NA|358aa|up_7|NZ_CP040437.1_3813575_3814649_+	pfam09982, DUF2219, Uncharacterized protein conserved in bacteria (DUF2219)	NA|405aa|up_6|NZ_CP040437.1_3814871_3816086_-	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane]	NA|424aa|up_5|NZ_CP040437.1_3816186_3817458_-	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane]	NA|382aa|up_4|NZ_CP040437.1_3817454_3818600_-	TIGR02282, Membrane-bound_lytic_murein_transglycosylase_B, lytic murein transglycosylase B	NA|368aa|up_3|NZ_CP040437.1_3819678_3820782_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|371aa|up_2|NZ_CP040437.1_3820833_3821946_-	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA	NA|692aa|up_1|NZ_CP040437.1_3821942_3824018_-	TIGR03423, pbp2_mrdA, penicillin-binding protein 2	NA|162aa|up_0|NZ_CP040437.1_3824021_3824507_-	COG2891, MreD, Cell shape-determining protein [Cell envelope biogenesis, outer membrane]	NA|349aa|down_0|NZ_CP040437.1_3825722_3826769_-	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional	NA|313aa|down_1|NZ_CP040437.1_3827052_3827991_+	cd01942, ribokinase_group_A, Ribokinase-like subgroup A	NA|212aa|down_2|NZ_CP040437.1_3828135_3828771_-	COG0546, Gph, Predicted phosphatases [General function prediction only]	NA|244aa|down_3|NZ_CP040437.1_3828758_3829490_-	NA	NA|83aa|down_4|NZ_CP040437.1_3830381_3830630_+	NA	NA|644aa|down_5|NZ_CP040437.1_3830823_3832755_-	cd09599, M1_LTA4H, Peptidase M1 family including Leukotriene A4 hydrolase catalytic domain	NA|254aa|down_6|NZ_CP040437.1_3832937_3833699_-	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA|151aa|down_7|NZ_CP040437.1_3833778_3834231_+	cd01285, nucleoside_deaminase, Nucleoside deaminases include adenosine, guanine and cytosine deaminases	NA|87aa|down_8|NZ_CP040437.1_3834430_3834691_+	NA	NA|109aa|down_9|NZ_CP040437.1_3834765_3835092_+	NA
GCF_009676545.1_ASM967654v1	NZ_CP040437	Stenotrophomonas maltophilia strain PEG-305 chromosome, complete genome	5	4011797-4011873	5	CRISPRCasFinder	no		cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	Orphan	GTACATCCACGCCATGCGTGGATG	24	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,WYL,Cas9_archaeal,DinG,PD-DExK	NA|57aa|up_8|NZ_CP040437.1_4005359_4005530_+,NA|125aa|up_4|NZ_CP040437.1_4008084_4008459_-,NA|322aa|up_3|NZ_CP040437.1_4008455_4009421_-,NA|146aa|down_2|NZ_CP040437.1_4013522_4013960_-	NA|243aa|up_9|NZ_CP040437.1_4004516_4005245_+	pfam08883, DOPA_dioxygen, Dopa 4,5-dioxygenase family	NA|57aa|up_8|NZ_CP040437.1_4005359_4005530_+	NA	NA|148aa|up_7|NZ_CP040437.1_4005608_4006052_+	PRK05395, PRK05395, type II 3-dehydroquinate dehydratase	NA|160aa|up_6|NZ_CP040437.1_4006111_4006591_+	PRK06302, PRK06302, acetyl-CoA carboxylase biotin carboxyl carrier protein	NA|456aa|up_5|NZ_CP040437.1_4006601_4007969_+	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated	NA|125aa|up_4|NZ_CP040437.1_4008084_4008459_-	NA	NA|322aa|up_3|NZ_CP040437.1_4008455_4009421_-	NA	NA|307aa|up_2|NZ_CP040437.1_4009584_4010505_+	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA)	NA|255aa|up_1|NZ_CP040437.1_4010547_4011312_+	pfam11906, DUF3426, Protein of unknown function (DUF3426)	NA|92aa|up_0|NZ_CP040437.1_4011427_4011703_+	PRK00430, fis, DNA-binding transcriptional regulator Fis	NA|332aa|down_0|NZ_CP040437.1_4011887_4012883_-	COG4589, COG4589, Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only]	NA|210aa|down_1|NZ_CP040437.1_4012879_4013509_-	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|146aa|down_2|NZ_CP040437.1_4013522_4013960_-	NA	NA|443aa|down_3|NZ_CP040437.1_4013956_4015285_-	cd14527, DSP_bac, unknown subfamily of bacterial and plant dual specificity protein phosphatases	NA|584aa|down_4|NZ_CP040437.1_4015284_4017036_-	pfam12147, Methyltransf_20, Putative methyltransferase	NA|206aa|down_5|NZ_CP040437.1_4017070_4017688_-	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]	NA|528aa|down_6|NZ_CP040437.1_4017896_4019480_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|428aa|down_7|NZ_CP040437.1_4019541_4020825_+	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional	NA|292aa|down_8|NZ_CP040437.1_4020959_4021835_-	PRK06596, PRK06596, RNA polymerase factor sigma-32; Reviewed	NA|238aa|down_9|NZ_CP040437.1_4022113_4022827_-	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional
