assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009684695.1_ASM968469v1	NZ_CP045695	[Clostridium] scindens strain BL389WT3D chromosome, complete genome	1	356123-356895	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG	Type I-U,Type I-C, Type I-U?	GTCTCTCCCTGTATAGGGAGAGTGGATTGAAAT,GTCTCTCCCTGTATAGGGAGAGTGGATTGAAAT,GTCTCTCCCTGTATAGGGAGAGTGGATTGAAAT	33,33,33	0	0	NA	NA	NA:NA:NA	11,11,11	11	TypeI-U,TypeI-C,TypeI-U?	WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG	NA|64aa|up_7|NZ_CP045695.1_347709_347901_+,NA|85aa|down_9|NZ_CP045695.1_365623_365878_+	NA|442aa|up_9|NZ_CP045695.1_344642_345968_+	smart00812, Alpha_L_fucos, Alpha-L-fucosidase	NA|520aa|up_8|NZ_CP045695.1_345999_347559_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|64aa|up_7|NZ_CP045695.1_347709_347901_+	NA	cas3|808aa|up_6|NZ_CP045695.1_347951_350375_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|247aa|up_5|NZ_CP045695.1_350390_351131_+	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|663aa|up_4|NZ_CP045695.1_351117_353106_+	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas7|286aa|up_3|NZ_CP045695.1_353102_353960_+	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas4|221aa|up_2|NZ_CP045695.1_353946_354609_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas1|344aa|up_1|NZ_CP045695.1_354611_355643_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|97aa|up_0|NZ_CP045695.1_355651_355942_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|404aa|down_0|NZ_CP045695.1_357185_358397_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|216aa|down_1|NZ_CP045695.1_359958_360606_+	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]	NA|132aa|down_2|NZ_CP045695.1_360624_361020_+	cd07824, SRPBCC_6, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|69aa|down_3|NZ_CP045695.1_361048_361255_+	pfam13783, DUF4177, Domain of unknown function (DUF4177)	NA|114aa|down_4|NZ_CP045695.1_361251_361593_+	pfam12675, DUF3795, Protein of unknown function (DUF3795)	NA|327aa|down_5|NZ_CP045695.1_362127_363108_+	COG2005, ModE, N-terminal domain of molybdenum-binding protein [General function prediction only]	NA|345aa|down_6|NZ_CP045695.1_363150_364185_+	pfam13478, XdhC_C, XdhC Rossmann domain	NA|342aa|down_7|NZ_CP045695.1_364214_365240_+	cd03522, MoeA_like, MoeA_like	NA|84aa|down_8|NZ_CP045695.1_365323_365575_+	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|85aa|down_9|NZ_CP045695.1_365623_365878_+	NA
GCF_009684695.1_ASM968469v1	NZ_CP045695	[Clostridium] scindens strain BL389WT3D chromosome, complete genome	2	358549-359933	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas5,cas8c,cas7,cas4,cas1,cas2	WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG	Type I-U,Type I-C, Type I-U?	GTCTCTCCCTGTATAGGGAGAGTGGATTGAAAT,GTCTCTCCCTGTATAGGGAGAGTGGATTGAAAT,GTCTCTCCCTGTATAGGGAGAGTGGATTGAAAT	33,33,33	0	0	NA	NA	NA:NA:NA	20,20,20	20	TypeI-U,TypeI-C,TypeI-U?	WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG	NA|64aa|up_8|NZ_CP045695.1_347709_347901_+,NA|85aa|down_8|NZ_CP045695.1_365623_365878_+	NA|520aa|up_9|NZ_CP045695.1_345999_347559_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|64aa|up_8|NZ_CP045695.1_347709_347901_+	NA	cas3|808aa|up_7|NZ_CP045695.1_347951_350375_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas5|247aa|up_6|NZ_CP045695.1_350390_351131_+	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas8c|663aa|up_5|NZ_CP045695.1_351117_353106_+	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1)	cas7|286aa|up_4|NZ_CP045695.1_353102_353960_+	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7	cas4|221aa|up_3|NZ_CP045695.1_353946_354609_+	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas1|344aa|up_2|NZ_CP045695.1_354611_355643_+	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG	cas2|97aa|up_1|NZ_CP045695.1_355651_355942_+	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	NA|404aa|up_0|NZ_CP045695.1_357185_358397_+	pfam01548, DEDD_Tnp_IS110, Transposase	NA|216aa|down_0|NZ_CP045695.1_359958_360606_+	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only]	NA|132aa|down_1|NZ_CP045695.1_360624_361020_+	cd07824, SRPBCC_6, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins	NA|69aa|down_2|NZ_CP045695.1_361048_361255_+	pfam13783, DUF4177, Domain of unknown function (DUF4177)	NA|114aa|down_3|NZ_CP045695.1_361251_361593_+	pfam12675, DUF3795, Protein of unknown function (DUF3795)	NA|327aa|down_4|NZ_CP045695.1_362127_363108_+	COG2005, ModE, N-terminal domain of molybdenum-binding protein [General function prediction only]	NA|345aa|down_5|NZ_CP045695.1_363150_364185_+	pfam13478, XdhC_C, XdhC Rossmann domain	NA|342aa|down_6|NZ_CP045695.1_364214_365240_+	cd03522, MoeA_like, MoeA_like	NA|84aa|down_7|NZ_CP045695.1_365323_365575_+	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|85aa|down_8|NZ_CP045695.1_365623_365878_+	NA	NA|298aa|down_9|NZ_CP045695.1_365874_366768_+	cd13537, PBP2_YvgL_like, Substrate binding domain of putative molybdate-binding protein YvgL and similar proteins;the type 2 periplasmic binding protein fold
GCF_009684695.1_ASM968469v1	NZ_CP045695	[Clostridium] scindens strain BL389WT3D chromosome, complete genome	3	2101174-2101287	3	CRISPRCasFinder	no		WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG	Orphan	TTGCTGTGGCGGCTTCGGCGGCAACGGCAATGG	33	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG	NA,NA|166aa|down_0|NZ_CP045695.1_2101664_2102162_+,NA|95aa|down_1|NZ_CP045695.1_2102154_2102439_+,NA|165aa|down_3|NZ_CP045695.1_2103004_2103499_-	NA|450aa|up_9|NZ_CP045695.1_2088994_2090344_-	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|115aa|up_8|NZ_CP045695.1_2090345_2090690_-	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|298aa|up_7|NZ_CP045695.1_2090910_2091804_-	cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1	NA|237aa|up_6|NZ_CP045695.1_2091823_2092534_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|897aa|up_5|NZ_CP045695.1_2092530_2095221_-	COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]	NA|202aa|up_4|NZ_CP045695.1_2095240_2095846_-	PRK13996, PRK13996, potassium-transporting ATPase subunit C; Provisional	NA|691aa|up_3|NZ_CP045695.1_2095869_2097942_-	PRK01122, PRK01122, potassium-transporting ATPase subunit KdpB	NA|581aa|up_2|NZ_CP045695.1_2097954_2099697_-	pfam03814, KdpA, Potassium-transporting ATPase A subunit	NA|135aa|up_1|NZ_CP045695.1_2099747_2100152_-	sd00006, TPR, Tetratricopeptide repeat	NA|212aa|up_0|NZ_CP045695.1_2100349_2100985_+	TIGR02349, Chaperone_protein_DnaJ, chaperone protein DnaJ	NA|166aa|down_0|NZ_CP045695.1_2101664_2102162_+	NA	NA|95aa|down_1|NZ_CP045695.1_2102154_2102439_+	NA	NA|159aa|down_2|NZ_CP045695.1_2102531_2103008_-	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism]	NA|165aa|down_3|NZ_CP045695.1_2103004_2103499_-	NA	NA|246aa|down_4|NZ_CP045695.1_2103658_2104396_+	cd02570, PseudoU_synth_EcTruA, Eukaryotic and bacterial pseudouridine synthases similar to E	NA|250aa|down_5|NZ_CP045695.1_2104492_2105242_-	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|468aa|down_6|NZ_CP045695.1_2105312_2106716_-	pfam02447, GntP_permease, GntP family permease	NA|333aa|down_7|NZ_CP045695.1_2106745_2107744_-	PRK03743, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA|435aa|down_8|NZ_CP045695.1_2107778_2109083_-	pfam07005, DUF1537, Putative sugar-binding N-terminal domain	NA|475aa|down_9|NZ_CP045695.1_2109228_2110653_-	PLN02858, PLN02858, fructose-bisphosphate aldolase
GCF_009684695.1_ASM968469v1	NZ_CP045695	[Clostridium] scindens strain BL389WT3D chromosome, complete genome	4	2818108-2820364	4,3,3	CRISPRCasFinder,CRT,PILER-CR	no		WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG	Orphan	ATTTCAATCCACGTTCCCATTGCAGGGAACGAC,ATTTCAATCCACGTTCCCATTGCAGGGAACGAC,ATTTCAATCCACGTTCCCATTGCAGGGAACGAC	33,33,33	0	0	NA	NA	NA:NA:NA	33,33,21	33	Orphan	WYL,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,csa3,DEDDh,c2c9_V-U4,DinG	NA|97aa|up_7|NZ_CP045695.1_2812716_2813007_-,NA|53aa|up_6|NZ_CP045695.1_2813167_2813326_-,NA|109aa|up_5|NZ_CP045695.1_2813583_2813910_-,NA|50aa|down_1|NZ_CP045695.1_2822677_2822827_-,NA|54aa|down_3|NZ_CP045695.1_2823665_2823827_-,NA|869aa|down_7|NZ_CP045695.1_2827704_2830311_-	NA|258aa|up_9|NZ_CP045695.1_2808202_2808976_-	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|477aa|up_8|NZ_CP045695.1_2810100_2811531_-	pfam06782, UPF0236, Uncharacterized protein family (UPF0236)	NA|97aa|up_7|NZ_CP045695.1_2812716_2813007_-	NA	NA|53aa|up_6|NZ_CP045695.1_2813167_2813326_-	NA	NA|109aa|up_5|NZ_CP045695.1_2813583_2813910_-	NA	NA|281aa|up_4|NZ_CP045695.1_2813988_2814831_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|246aa|up_3|NZ_CP045695.1_2814890_2815628_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|222aa|up_2|NZ_CP045695.1_2815615_2816281_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|278aa|up_1|NZ_CP045695.1_2816296_2817130_-	cd13624, PBP2_Arg_Lys_His, Substrate binding domain of the arginine-, lysine-, histidine-binding protein ArtJ; the type 2 periplasmic binding protein fold	NA|189aa|up_0|NZ_CP045695.1_2817156_2817723_-	COG5418, COG5418, Predicted secreted protein [Function unknown]	NA|625aa|down_0|NZ_CP045695.1_2820761_2822636_-	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain	NA|50aa|down_1|NZ_CP045695.1_2822677_2822827_-	NA	NA|174aa|down_2|NZ_CP045695.1_2822857_2823379_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|54aa|down_3|NZ_CP045695.1_2823665_2823827_-	NA	NA|157aa|down_4|NZ_CP045695.1_2824012_2824483_-	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|537aa|down_5|NZ_CP045695.1_2824841_2826452_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|234aa|down_6|NZ_CP045695.1_2827015_2827717_-	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein	NA|869aa|down_7|NZ_CP045695.1_2827704_2830311_-	NA	NA|93aa|down_8|NZ_CP045695.1_2830773_2831052_-	TIGR04069, hypothetical_protein, peptide maturation system acyl carrier-related protein	NA|350aa|down_9|NZ_CP045695.1_2831063_2832113_-	TIGR04066, conserved_hypothetical_protein, peptide maturation system protein, TIGR04066 family
