assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009685135.1_ASM968513v1	NZ_CP045648	Staphylococcus epidermidis strain IRL01 chromosome, complete genome	1	482079-482162	1	CRISPRCasFinder	no		csa3,WYL,DEDDh,cas3,DinG	Orphan	GAAATTCTACGGACAAGGCAAGTTG	25	1	3	482104-482137|482104-482137|482104-482137	NZ_CP045648.1_1394402-1394435|NZ_CP045648.1_1394461-1394494|NZ_CP045648.1_1394520-1394553	NA	1	1	Orphan	csa3,WYL,DEDDh,cas3,DinG	NA|52aa|up_8|NZ_CP045648.1_474291_474447_-,NA|59aa|up_7|NZ_CP045648.1_474772_474949_+,NA|44aa|up_1|NZ_CP045648.1_479771_479903_+,NA|43aa|down_5|NZ_CP045648.1_487544_487673_-	NA|393aa|up_9|NZ_CP045648.1_472883_474062_+	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family	NA|52aa|up_8|NZ_CP045648.1_474291_474447_-	NA	NA|59aa|up_7|NZ_CP045648.1_474772_474949_+	NA	NA|165aa|up_6|NZ_CP045648.1_475012_475507_-	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]	NA|204aa|up_5|NZ_CP045648.1_475672_476284_+	TIGR01076, Uncharacterized_protein_YhcS, LPXTG-site transpeptidase (sortase) family protein	NA|270aa|up_4|NZ_CP045648.1_476627_477437_+	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase	NA|331aa|up_3|NZ_CP045648.1_477623_478616_-	PRK12480, PRK12480, D-lactate dehydrogenase; Provisional	NA|221aa|up_2|NZ_CP045648.1_478862_479525_+	cd02149, NfsB-like, nitroreductase similar to Escherichia coli NfsB	NA|44aa|up_1|NZ_CP045648.1_479771_479903_+	NA	NA|498aa|up_0|NZ_CP045648.1_479902_481396_+	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|263aa|down_0|NZ_CP045648.1_482224_483013_-	COG2514, COG2514, Predicted ring-cleavage extradiol dioxygenase [General function prediction only]	NA|94aa|down_1|NZ_CP045648.1_483274_483556_-	pfam14542, Acetyltransf_CG, GCN5-related N-acetyl-transferase	NA|316aa|down_2|NZ_CP045648.1_483722_484670_+	cd01017, AdcA, Metal binding protein AdcA	NA|480aa|down_3|NZ_CP045648.1_484740_486180_-	cd07088, ALDH_LactADH-AldA, Escherichia coli lactaldehyde dehydrogenase AldA-like	NA|350aa|down_4|NZ_CP045648.1_486413_487463_-	COG3949, COG3949, Uncharacterized membrane protein [Function unknown]	NA|43aa|down_5|NZ_CP045648.1_487544_487673_-	NA	NA|599aa|down_6|NZ_CP045648.1_487801_489598_+	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]	NA|655aa|down_7|NZ_CP045648.1_489826_491791_-	COG3855, Fbp, Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]	NA|205aa|down_8|NZ_CP045648.1_491964_492579_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|333aa|down_9|NZ_CP045648.1_492686_493685_-	TIGR02356, molybdopterin_biosynthesis_protein_moeB, thiazole biosynthesis adenylyltransferase ThiF, E
GCF_009685135.1_ASM968513v1	NZ_CP045648	Staphylococcus epidermidis strain IRL01 chromosome, complete genome	2	1901030-1901122	2	CRISPRCasFinder	no	cas3	csa3,WYL,DEDDh,cas3,DinG	Unclear	TTATACATGAACCTCAAGCTCATGTGTTC	29	0	0	NA	NA	NA	1	1	Unclear	csa3,WYL,DEDDh,cas3,DinG	NA,NA	NA|117aa|up_9|NZ_CP045648.1_1890771_1891122_-	PRK05338, rplS, 50S ribosomal protein L19; Provisional	NA|246aa|up_8|NZ_CP045648.1_1891227_1891965_-	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|168aa|up_7|NZ_CP045648.1_1891964_1892468_-	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional	NA|92aa|up_6|NZ_CP045648.1_1892594_1892870_-	COG0228, RpsP, Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]	NA|456aa|up_5|NZ_CP045648.1_1893177_1894545_-	PRK10867, PRK10867, signal recognition particle protein; Provisional	NA|111aa|up_4|NZ_CP045648.1_1894575_1894908_-	PRK00118, PRK00118, putative DNA-binding protein; Validated	NA|409aa|up_3|NZ_CP045648.1_1894909_1896136_-	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional	NA|1190aa|up_2|NZ_CP045648.1_1896132_1899702_-	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	NA|246aa|up_1|NZ_CP045648.1_1899828_1900566_-	PRK00102, rnc, ribonuclease III; Reviewed	NA|78aa|up_0|NZ_CP045648.1_1900680_1900914_-	PRK00982, acpP, acyl carrier protein; Provisional	NA|245aa|down_0|NZ_CP045648.1_1901141_1901876_-	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated	NA|309aa|down_1|NZ_CP045648.1_1901868_1902795_-	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]	NA|326aa|down_2|NZ_CP045648.1_1902796_1903774_-	PRK05331, PRK05331, phosphate acyltransferase PlsX	NA|204aa|down_3|NZ_CP045648.1_1903775_1904387_-	PRK04424, PRK04424, transcription factor FapR	cas3|683aa|down_4|NZ_CP045648.1_1904494_1906543_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|553aa|down_5|NZ_CP045648.1_1906746_1908405_-	TIGR03599, YloV, DAK2 domain fusion protein YloV	NA|125aa|down_6|NZ_CP045648.1_1908419_1908794_-	COG1302, COG1302, Uncharacterized protein conserved in bacteria [Function unknown]	NA|63aa|down_7|NZ_CP045648.1_1909151_1909340_+	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|212aa|down_8|NZ_CP045648.1_1909422_1910058_-	TIGR01378, Thiamine_pyrophosphokinase, thiamine pyrophosphokinase	NA|215aa|down_9|NZ_CP045648.1_1910062_1910707_-	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE)
GCF_009685135.1_ASM968513v1	NZ_CP045648	Staphylococcus epidermidis strain IRL01 chromosome, complete genome	3	2256071-2256166	3	CRISPRCasFinder	no		csa3,WYL,DEDDh,cas3,DinG	Orphan	CACTGCAATTTTTAATTGCTTGTGTCACTTATG	33	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DEDDh,cas3,DinG	NA|53aa|up_5|NZ_CP045648.1_2252089_2252248_+,NA|52aa|down_6|NZ_CP045648.1_2259913_2260069_-,NA|43aa|down_7|NZ_CP045648.1_2260443_2260572_+	NA|436aa|up_9|NZ_CP045648.1_2248312_2249620_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_8|NZ_CP045648.1_2249714_2250476_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|287aa|up_7|NZ_CP045648.1_2250797_2251658_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|64aa|up_6|NZ_CP045648.1_2251723_2251915_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|53aa|up_5|NZ_CP045648.1_2252089_2252248_+	NA	NA|271aa|up_4|NZ_CP045648.1_2252517_2253330_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_3|NZ_CP045648.1_2253350_2254046_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_2|NZ_CP045648.1_2254038_2255064_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_1|NZ_CP045648.1_2255316_2255613_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_0|NZ_CP045648.1_2255605_2255992_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|127aa|down_0|NZ_CP045648.1_2256251_2256632_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|118aa|down_1|NZ_CP045648.1_2256805_2257159_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|108aa|down_2|NZ_CP045648.1_2257301_2257625_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|181aa|down_3|NZ_CP045648.1_2257807_2258350_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_4|NZ_CP045648.1_2258430_2259147_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_5|NZ_CP045648.1_2259307_2259730_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|52aa|down_6|NZ_CP045648.1_2259913_2260069_-	NA	NA|43aa|down_7|NZ_CP045648.1_2260443_2260572_+	NA	NA|167aa|down_8|NZ_CP045648.1_2260654_2261155_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|202aa|down_9|NZ_CP045648.1_2261425_2262031_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)
GCF_009685135.1_ASM968513v1	NZ_CP045648	Staphylococcus epidermidis strain IRL01 chromosome, complete genome	4	2408555-2408645	4	CRISPRCasFinder	no		csa3,WYL,DEDDh,cas3,DinG	Orphan	TGTTGAATTTCCCGGTGAAATTCTCTATGTTG	32	0	0	NA	NA	NA	1	1	Orphan	csa3,WYL,DEDDh,cas3,DinG	NA|99aa|up_9|NZ_CP045648.1_2400640_2400937_-,NA|62aa|up_2|NZ_CP045648.1_2406252_2406438_-,NA	NA|99aa|up_9|NZ_CP045648.1_2400640_2400937_-	NA	NA|141aa|up_8|NZ_CP045648.1_2401068_2401491_-	TIGR01069, Endonuclease_MutS2, MutS2 family protein	NA|230aa|up_7|NZ_CP045648.1_2401929_2402619_+	pfam06570, DUF1129, Protein of unknown function (DUF1129)	NA|163aa|up_6|NZ_CP045648.1_2402674_2403163_-	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|403aa|up_5|NZ_CP045648.1_2403169_2404378_-	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|285aa|up_4|NZ_CP045648.1_2404435_2405290_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|200aa|up_3|NZ_CP045648.1_2405370_2405970_-	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|62aa|up_2|NZ_CP045648.1_2406252_2406438_-	NA	NA|382aa|up_1|NZ_CP045648.1_2406457_2407603_-	PRK13289, PRK13289, NO-inducible flavohemoprotein	NA|225aa|up_0|NZ_CP045648.1_2407774_2408449_+	PRK13276, PRK13276, iron-sulfur cluster repair di-iron protein ScdA	NA|159aa|down_0|NZ_CP045648.1_2408759_2409236_-	cd06121, cupin_YML079wp, Saccharomyces cerevisiae YML079wp and related proteins, cupin domain	NA|239aa|down_1|NZ_CP045648.1_2409235_2409952_-	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|120aa|down_2|NZ_CP045648.1_2410204_2410564_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|725aa|down_3|NZ_CP045648.1_2410678_2412853_-	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|220aa|down_4|NZ_CP045648.1_2413116_2413776_-	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|267aa|down_5|NZ_CP045648.1_2414186_2414987_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|337aa|down_6|NZ_CP045648.1_2415179_2416190_-	pfam01384, PHO4, Phosphate transporter family	NA|206aa|down_7|NZ_CP045648.1_2416204_2416822_-	COG1392, COG1392, Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]	NA|634aa|down_8|NZ_CP045648.1_2417343_2419245_-	pfam02687, FtsX, FtsX-like permease family	NA|254aa|down_9|NZ_CP045648.1_2419222_2419984_-	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
