assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009708275.1_ASM970827v1	NZ_CP038881	Piscirickettsia salmonis strain Psal-003 chromosome, complete genome	1	363106-363235	1	CRISPRCasFinder	no		DEDDh,csa3,RT,DinG,cas3	Orphan	ATAACTGTAAGGAGAAGGCATCGTTTTTCCTTATTGTATTTTTTAA	46	1	56	363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189|363152-363189	NZ_CP038882.1_40898-40861|NZ_CP038882.1_76554-76591|NZ_CP038881.1_155095-155058|NZ_CP038881.1_256591-256554|NZ_CP038881.1_957126-957089|NZ_CP038881.1_1046676-1046639|NZ_CP038881.1_1055546-1055509|NZ_CP038881.1_1087425-1087388|NZ_CP038881.1_1169315-1169278|NZ_CP038881.1_1178616-1178579|NZ_CP038881.1_1477597-1477560|NZ_CP038881.1_1477731-1477694|NZ_CP038881.1_1748563-1748526|NZ_CP038881.1_2281535-2281498|NZ_CP038881.1_2385107-2385070|NZ_CP038881.1_2421886-2421849|NZ_CP038881.1_2610889-2610852|NZ_CP038881.1_2730400-2730363|NZ_CP038881.1_46479-46516|NZ_CP038881.1_157365-157402|NZ_CP038881.1_178807-178844|NZ_CP038881.1_183189-183226|NZ_CP038881.1_225981-226018|NZ_CP038881.1_461900-461937|NZ_CP038881.1_598555-598592|NZ_CP038881.1_960341-960378|NZ_CP038881.1_1248036-1248073|NZ_CP038881.1_1358594-1358631|NZ_CP038881.1_1516166-1516203|NZ_CP038881.1_1560988-1561025|NZ_CP038881.1_1593051-1593088|NZ_CP038881.1_1607415-1607452|NZ_CP038881.1_1697978-1698015|NZ_CP038881.1_1703553-1703590|NZ_CP038881.1_2017768-2017805|NZ_CP038881.1_2021274-2021311|NZ_CP038881.1_2055602-2055639|NZ_CP038881.1_2080709-2080746|NZ_CP038881.1_2194283-2194320|NZ_CP038881.1_2252773-2252810|NZ_CP038881.1_2285831-2285868|NZ_CP038881.1_2312429-2312466|NZ_CP038881.1_2313546-2313583|NZ_CP038881.1_2368456-2368493|NZ_CP038881.1_2412083-2412120|NZ_CP038881.1_2507511-2507548|NZ_CP038881.1_2509663-2509700|NZ_CP038881.1_2565321-2565358|NZ_CP038881.1_2791890-2791927|NZ_CP038881.1_2795716-2795753|NZ_CP038881.1_2998027-2998064|NZ_CP038881.1_1055412-1055375|NZ_CP038881.1_2204462-2204425|NZ_CP038881.1_352899-352936|NZ_CP038881.1_2194417-2194454|NZ_CP038883.1_5737-5774	NA	1	1	Orphan	DEDDh,csa3,RT,DinG,cas3	NA|73aa|up_9|NZ_CP038881.1_353608_353827_-,NA|65aa|up_5|NZ_CP038881.1_357808_358003_-,NA|141aa|up_3|NZ_CP038881.1_359325_359748_+,NA|105aa|up_0|NZ_CP038881.1_361884_362199_-,NA|97aa|down_0|NZ_CP038881.1_363764_364055_+,NA|233aa|down_1|NZ_CP038881.1_364092_364791_+,NA|99aa|down_2|NZ_CP038881.1_364807_365104_+,NA|382aa|down_3|NZ_CP038881.1_365227_366373_+,NA|192aa|down_4|NZ_CP038881.1_366645_367221_+	NA|73aa|up_9|NZ_CP038881.1_353608_353827_-	NA	NA|325aa|up_8|NZ_CP038881.1_354194_355169_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|85aa|up_7|NZ_CP038881.1_355707_355962_+	PRK08116, PRK08116, hypothetical protein; Validated	NA|329aa|up_6|NZ_CP038881.1_356684_357671_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|65aa|up_5|NZ_CP038881.1_357808_358003_-	NA	NA|216aa|up_4|NZ_CP038881.1_358685_359333_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|141aa|up_3|NZ_CP038881.1_359325_359748_+	NA	NA|468aa|up_2|NZ_CP038881.1_359909_361313_+	cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like	NA|192aa|up_1|NZ_CP038881.1_361363_361939_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|105aa|up_0|NZ_CP038881.1_361884_362199_-	NA	NA|97aa|down_0|NZ_CP038881.1_363764_364055_+	NA	NA|233aa|down_1|NZ_CP038881.1_364092_364791_+	NA	NA|99aa|down_2|NZ_CP038881.1_364807_365104_+	NA	NA|382aa|down_3|NZ_CP038881.1_365227_366373_+	NA	NA|192aa|down_4|NZ_CP038881.1_366645_367221_+	NA	NA|278aa|down_5|NZ_CP038881.1_367278_368112_-	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|395aa|down_6|NZ_CP038881.1_368227_369412_+	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism]	NA|315aa|down_7|NZ_CP038881.1_369430_370375_-	PRK10260, PRK10260, L,D-transpeptidase; Provisional	NA|262aa|down_8|NZ_CP038881.1_370679_371465_+	TIGR03545, TIGR03545, TIGR03545 family protein	NA|123aa|down_9|NZ_CP038881.1_371582_371951_-	COG3603, COG3603, Uncharacterized conserved protein [Function unknown]
GCF_009708275.1_ASM970827v1	NZ_CP038881	Piscirickettsia salmonis strain Psal-003 chromosome, complete genome	2	680144-680264	2	CRISPRCasFinder	no		DEDDh,csa3,RT,DinG,cas3	Orphan	AGCTTATCAATGGTTAGTAGCCCTTGGACTTAATCAA	37	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,RT,DinG,cas3	NA,NA|141aa|down_0|NZ_CP038881.1_680420_680843_+,NA|137aa|down_1|NZ_CP038881.1_681086_681497_-,NA|88aa|down_2|NZ_CP038881.1_681765_682029_-,NA|172aa|down_3|NZ_CP038881.1_682261_682777_-,NA|158aa|down_7|NZ_CP038881.1_688164_688638_+	NA|265aa|up_9|NZ_CP038881.1_667769_668564_+	PRK01827, thyA, thymidylate synthase; Reviewed	NA|340aa|up_8|NZ_CP038881.1_668665_669685_+	TIGR00512, methylthioribose-1-phosphate_isomerase_predicted, S-methyl-5-thioribose-1-phosphate isomerase	NA|204aa|up_7|NZ_CP038881.1_669731_670343_+	PRK09220, PRK09220, methylthioribulose 1-phosphate dehydratase	NA|229aa|up_6|NZ_CP038881.1_670346_671033_+	cd01629, HAD_EP, Enolase-phosphatase similar to human enolase-phosphatase E1 and and Xanthomonas oryzae pv	NA|181aa|up_5|NZ_CP038881.1_671029_671572_+	COG1791, COG1791, Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]	NA|396aa|up_4|NZ_CP038881.1_673384_674572_-	PRK09550, mtnK, methylthioribose kinase; Reviewed	NA|242aa|up_3|NZ_CP038881.1_674817_675543_+	cd14843, D-Ala-D-Ala_dipeptidase_like, D-Ala-D-Ala dipeptidase, includes uncharacterized enzymes	NA|265aa|up_2|NZ_CP038881.1_675721_676516_+	pfam01863, DUF45, Protein of unknown function DUF45	NA|132aa|up_1|NZ_CP038881.1_676512_676908_-	pfam17775, UPF0225, UPF0225 domain	NA|155aa|up_0|NZ_CP038881.1_678301_678766_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|141aa|down_0|NZ_CP038881.1_680420_680843_+	NA	NA|137aa|down_1|NZ_CP038881.1_681086_681497_-	NA	NA|88aa|down_2|NZ_CP038881.1_681765_682029_-	NA	NA|172aa|down_3|NZ_CP038881.1_682261_682777_-	NA	NA|337aa|down_4|NZ_CP038881.1_682921_683932_-	cd00180, PKc, Catalytic domain of Protein Kinases	NA|694aa|down_5|NZ_CP038881.1_684235_686317_-	cd14016, STKc_CK1, Catalytic domain of the Serine/Threonine protein kinase, Casein Kinase 1	NA|420aa|down_6|NZ_CP038881.1_686772_688032_-	PRK14072, PRK14072, diphosphate--fructose-6-phosphate 1-phosphotransferase	NA|158aa|down_7|NZ_CP038881.1_688164_688638_+	NA	NA|461aa|down_8|NZ_CP038881.1_688646_690029_+	TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase	NA|205aa|down_9|NZ_CP038881.1_690021_690636_+	PRK05920, PRK05920, aromatic acid decarboxylase; Validated
GCF_009708275.1_ASM970827v1	NZ_CP038881	Piscirickettsia salmonis strain Psal-003 chromosome, complete genome	3	1612436-1612542	3	CRISPRCasFinder	no		DEDDh,csa3,RT,DinG,cas3	Orphan	GCGCTTGATAATCTCCCTTTGTTTATTAAAATGCAAGA	38	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,RT,DinG,cas3	NA|154aa|up_9|NZ_CP038881.1_1601505_1601967_+,NA|62aa|up_7|NZ_CP038881.1_1604900_1605086_+,NA|105aa|up_2|NZ_CP038881.1_1609533_1609848_-,NA|87aa|up_1|NZ_CP038881.1_1610104_1610365_+,NA|86aa|down_0|NZ_CP038881.1_1613246_1613504_+,NA|204aa|down_4|NZ_CP038881.1_1617506_1618118_+,NA|87aa|down_5|NZ_CP038881.1_1618302_1618563_+,NA|67aa|down_7|NZ_CP038881.1_1620404_1620605_-	NA|154aa|up_9|NZ_CP038881.1_1601505_1601967_+	NA	NA|652aa|up_8|NZ_CP038881.1_1602265_1604221_-	PRK11619, PRK11619, lytic murein transglycosylase; Provisional	NA|62aa|up_7|NZ_CP038881.1_1604900_1605086_+	NA	NA|330aa|up_6|NZ_CP038881.1_1605419_1606409_+	COG1054, COG1054, Predicted sulfurtransferase [General function prediction only]	NA|192aa|up_5|NZ_CP038881.1_1606502_1607078_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|122aa|up_4|NZ_CP038881.1_1607023_1607389_-	pfam13384, HTH_23, Homeodomain-like domain	NA|541aa|up_3|NZ_CP038881.1_1607820_1609443_+	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|105aa|up_2|NZ_CP038881.1_1609533_1609848_-	NA	NA|87aa|up_1|NZ_CP038881.1_1610104_1610365_+	NA	NA|163aa|up_0|NZ_CP038881.1_1610384_1610873_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|86aa|down_0|NZ_CP038881.1_1613246_1613504_+	NA	NA|313aa|down_1|NZ_CP038881.1_1613573_1614512_+	pfam00665, rve, Integrase core domain	NA|522aa|down_2|NZ_CP038881.1_1614537_1616103_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|276aa|down_3|NZ_CP038881.1_1616312_1617140_-	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti	NA|204aa|down_4|NZ_CP038881.1_1617506_1618118_+	NA	NA|87aa|down_5|NZ_CP038881.1_1618302_1618563_+	NA	NA|318aa|down_6|NZ_CP038881.1_1619024_1619978_+	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms]	NA|67aa|down_7|NZ_CP038881.1_1620404_1620605_-	NA	NA|269aa|down_8|NZ_CP038881.1_1620979_1621786_+	COG3963, COG3963, Phospholipid N-methyltransferase [Lipid metabolism]	NA|324aa|down_9|NZ_CP038881.1_1621891_1622863_-	cd13643, PBP2_BCP_2, Substrate-binding domain of osmoregulatory ABC-type glycine betaine/choline/L-proline transport system-like; the type 2 periplasmic-binding protein fold
GCF_009708275.1_ASM970827v1	NZ_CP038882	Piscirickettsia salmonis strain Psal-003 plasmid unnamed1, complete sequence	1	93136-93359	1	CRT	no		RT	Orphan	AAACGGAACACAAACGGAACACAAA	25	0	0	NA	NA	NA	3	3	Orphan	DEDDh,csa3,RT,DinG,cas3	NA|68aa|up_9|NZ_CP038882.1_83627_83831_+,NA|57aa|up_8|NZ_CP038882.1_83827_83998_+,NA|86aa|up_5|NZ_CP038882.1_86025_86283_-,NA|57aa|up_3|NZ_CP038882.1_88787_88958_+,NA|563aa|down_2|NZ_CP038882.1_95493_97182_-,NA|163aa|down_4|NZ_CP038882.1_98725_99214_+,NA|243aa|down_5|NZ_CP038882.1_99271_100000_+,NA|327aa|down_6|NZ_CP038882.1_100456_101437_+,NA|60aa|down_8|NZ_CP038882.1_102614_102794_+,NA|99aa|down_9|NZ_CP038882.1_103012_103309_+	NA|68aa|up_9|NZ_CP038882.1_83627_83831_+	NA	NA|57aa|up_8|NZ_CP038882.1_83827_83998_+	NA	NA|361aa|up_7|NZ_CP038882.1_84184_85267_-	pfam00665, rve, Integrase core domain	NA|167aa|up_6|NZ_CP038882.1_85423_85924_+	pfam14319, Zn_Tnp_IS91, Transposase zinc-binding domain	NA|86aa|up_5|NZ_CP038882.1_86025_86283_-	NA	NA|396aa|up_4|NZ_CP038882.1_86351_87538_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|57aa|up_3|NZ_CP038882.1_88787_88958_+	NA	NA|272aa|up_2|NZ_CP038882.1_89287_90103_+	pfam04986, Y2_Tnp, Putative transposase	NA|197aa|up_1|NZ_CP038882.1_90348_90939_+	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	NA|340aa|up_0|NZ_CP038882.1_91904_92924_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|56aa|down_0|NZ_CP038882.1_94573_94741_-	PRK05771, PRK05771, V-type ATP synthase subunit I; Validated	NA|243aa|down_1|NZ_CP038882.1_94796_95525_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|563aa|down_2|NZ_CP038882.1_95493_97182_-	NA	NA|325aa|down_3|NZ_CP038882.1_97525_98500_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|163aa|down_4|NZ_CP038882.1_98725_99214_+	NA	NA|243aa|down_5|NZ_CP038882.1_99271_100000_+	NA	NA|327aa|down_6|NZ_CP038882.1_100456_101437_+	NA	NA|243aa|down_7|NZ_CP038882.1_101582_102311_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|60aa|down_8|NZ_CP038882.1_102614_102794_+	NA	NA|99aa|down_9|NZ_CP038882.1_103012_103309_+	NA
