assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009708315.1_ASM970831v1	NZ_CP038886	Piscirickettsia salmonis strain Psal-004 chromosome, complete genome	1	363130-363259	1	CRISPRCasFinder	no		DEDDh,csa3,RT,DinG,cas3	Orphan	ATAACTGTAAGGAGAAGGCATCGTTTTTCCTTATTGTATTTTTTAA	46	1	56	363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213|363176-363213	NZ_CP038887.1_39939-39902|NZ_CP038887.1_75595-75632|NZ_CP038886.1_155095-155058|NZ_CP038886.1_256591-256554|NZ_CP038886.1_957139-957102|NZ_CP038886.1_1046688-1046651|NZ_CP038886.1_1055558-1055521|NZ_CP038886.1_1087437-1087400|NZ_CP038886.1_1169327-1169290|NZ_CP038886.1_1178628-1178591|NZ_CP038886.1_1477610-1477573|NZ_CP038886.1_1477744-1477707|NZ_CP038886.1_1748576-1748539|NZ_CP038886.1_2280587-2280550|NZ_CP038886.1_2384159-2384122|NZ_CP038886.1_2420938-2420901|NZ_CP038886.1_2609941-2609904|NZ_CP038886.1_2729452-2729415|NZ_CP038886.1_46479-46516|NZ_CP038886.1_157365-157402|NZ_CP038886.1_178807-178844|NZ_CP038886.1_183189-183226|NZ_CP038886.1_225981-226018|NZ_CP038886.1_461924-461961|NZ_CP038886.1_598577-598614|NZ_CP038886.1_960354-960391|NZ_CP038886.1_1248048-1248085|NZ_CP038886.1_1358606-1358643|NZ_CP038886.1_1516179-1516216|NZ_CP038886.1_1561001-1561038|NZ_CP038886.1_1593064-1593101|NZ_CP038886.1_1607428-1607465|NZ_CP038886.1_1697991-1698028|NZ_CP038886.1_1703566-1703603|NZ_CP038886.1_2017780-2017817|NZ_CP038886.1_2021286-2021323|NZ_CP038886.1_2055613-2055650|NZ_CP038886.1_2079761-2079798|NZ_CP038886.1_2193335-2193372|NZ_CP038886.1_2251825-2251862|NZ_CP038886.1_2284883-2284920|NZ_CP038886.1_2311481-2311518|NZ_CP038886.1_2312598-2312635|NZ_CP038886.1_2367508-2367545|NZ_CP038886.1_2411135-2411172|NZ_CP038886.1_2506563-2506600|NZ_CP038886.1_2508715-2508752|NZ_CP038886.1_2564373-2564410|NZ_CP038886.1_2790942-2790979|NZ_CP038886.1_2794768-2794805|NZ_CP038886.1_2997079-2997116|NZ_CP038886.1_1055424-1055387|NZ_CP038886.1_2203514-2203477|NZ_CP038886.1_352923-352960|NZ_CP038886.1_2193469-2193506|NZ_CP038888.1_5737-5774	NA	1	1	Orphan	DEDDh,csa3,RT,DinG,cas3	NA|73aa|up_9|NZ_CP038886.1_353632_353851_-,NA|65aa|up_5|NZ_CP038886.1_357832_358027_-,NA|141aa|up_3|NZ_CP038886.1_359349_359772_+,NA|105aa|up_0|NZ_CP038886.1_361908_362223_-,NA|97aa|down_0|NZ_CP038886.1_363788_364079_+,NA|233aa|down_1|NZ_CP038886.1_364116_364815_+,NA|99aa|down_2|NZ_CP038886.1_364831_365128_+,NA|384aa|down_3|NZ_CP038886.1_365245_366397_+,NA|192aa|down_4|NZ_CP038886.1_366669_367245_+	NA|73aa|up_9|NZ_CP038886.1_353632_353851_-	NA	NA|325aa|up_8|NZ_CP038886.1_354218_355193_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|85aa|up_7|NZ_CP038886.1_355731_355986_+	PRK08116, PRK08116, hypothetical protein; Validated	NA|329aa|up_6|NZ_CP038886.1_356708_357695_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|65aa|up_5|NZ_CP038886.1_357832_358027_-	NA	NA|216aa|up_4|NZ_CP038886.1_358709_359357_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|141aa|up_3|NZ_CP038886.1_359349_359772_+	NA	NA|468aa|up_2|NZ_CP038886.1_359933_361337_+	cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like	NA|192aa|up_1|NZ_CP038886.1_361387_361963_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|105aa|up_0|NZ_CP038886.1_361908_362223_-	NA	NA|97aa|down_0|NZ_CP038886.1_363788_364079_+	NA	NA|233aa|down_1|NZ_CP038886.1_364116_364815_+	NA	NA|99aa|down_2|NZ_CP038886.1_364831_365128_+	NA	NA|384aa|down_3|NZ_CP038886.1_365245_366397_+	NA	NA|192aa|down_4|NZ_CP038886.1_366669_367245_+	NA	NA|278aa|down_5|NZ_CP038886.1_367302_368136_-	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|395aa|down_6|NZ_CP038886.1_368251_369436_+	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism]	NA|315aa|down_7|NZ_CP038886.1_369454_370399_-	PRK10260, PRK10260, L,D-transpeptidase; Provisional	NA|262aa|down_8|NZ_CP038886.1_370703_371489_+	TIGR03545, TIGR03545, TIGR03545 family protein	NA|123aa|down_9|NZ_CP038886.1_371606_371975_-	COG3603, COG3603, Uncharacterized conserved protein [Function unknown]
GCF_009708315.1_ASM970831v1	NZ_CP038886	Piscirickettsia salmonis strain Psal-004 chromosome, complete genome	2	680166-680286	2	CRISPRCasFinder	no		DEDDh,csa3,RT,DinG,cas3	Orphan	AGCTTATCAATGGTTAGTAGCCCTTGGACTTAATCAA	37	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,RT,DinG,cas3	NA,NA|141aa|down_0|NZ_CP038886.1_680442_680865_+,NA|137aa|down_1|NZ_CP038886.1_681108_681519_-,NA|88aa|down_2|NZ_CP038886.1_681787_682051_-,NA|172aa|down_3|NZ_CP038886.1_682283_682799_-,NA|158aa|down_7|NZ_CP038886.1_688186_688660_+	NA|265aa|up_9|NZ_CP038886.1_667791_668586_+	PRK01827, thyA, thymidylate synthase; Reviewed	NA|340aa|up_8|NZ_CP038886.1_668687_669707_+	TIGR00512, methylthioribose-1-phosphate_isomerase_predicted, S-methyl-5-thioribose-1-phosphate isomerase	NA|204aa|up_7|NZ_CP038886.1_669753_670365_+	PRK09220, PRK09220, methylthioribulose 1-phosphate dehydratase	NA|229aa|up_6|NZ_CP038886.1_670368_671055_+	cd01629, HAD_EP, Enolase-phosphatase similar to human enolase-phosphatase E1 and and Xanthomonas oryzae pv	NA|181aa|up_5|NZ_CP038886.1_671051_671594_+	COG1791, COG1791, Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]	NA|396aa|up_4|NZ_CP038886.1_673406_674594_-	PRK09550, mtnK, methylthioribose kinase; Reviewed	NA|242aa|up_3|NZ_CP038886.1_674839_675565_+	cd14843, D-Ala-D-Ala_dipeptidase_like, D-Ala-D-Ala dipeptidase, includes uncharacterized enzymes	NA|265aa|up_2|NZ_CP038886.1_675743_676538_+	pfam01863, DUF45, Protein of unknown function DUF45	NA|132aa|up_1|NZ_CP038886.1_676534_676930_-	pfam17775, UPF0225, UPF0225 domain	NA|155aa|up_0|NZ_CP038886.1_678323_678788_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|141aa|down_0|NZ_CP038886.1_680442_680865_+	NA	NA|137aa|down_1|NZ_CP038886.1_681108_681519_-	NA	NA|88aa|down_2|NZ_CP038886.1_681787_682051_-	NA	NA|172aa|down_3|NZ_CP038886.1_682283_682799_-	NA	NA|337aa|down_4|NZ_CP038886.1_682943_683954_-	cd00180, PKc, Catalytic domain of Protein Kinases	NA|694aa|down_5|NZ_CP038886.1_684257_686339_-	cd14016, STKc_CK1, Catalytic domain of the Serine/Threonine protein kinase, Casein Kinase 1	NA|420aa|down_6|NZ_CP038886.1_686794_688054_-	PRK14072, PRK14072, diphosphate--fructose-6-phosphate 1-phosphotransferase	NA|158aa|down_7|NZ_CP038886.1_688186_688660_+	NA	NA|461aa|down_8|NZ_CP038886.1_688668_690051_+	TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase	NA|205aa|down_9|NZ_CP038886.1_690043_690658_+	PRK05920, PRK05920, aromatic acid decarboxylase; Validated
GCF_009708315.1_ASM970831v1	NZ_CP038886	Piscirickettsia salmonis strain Psal-004 chromosome, complete genome	3	1612449-1612555	3	CRISPRCasFinder	no		DEDDh,csa3,RT,DinG,cas3	Orphan	GCGCTTGATAATCTCCCTTTGTTTATTAAAATGCAAGA	38	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,RT,DinG,cas3	NA|154aa|up_9|NZ_CP038886.1_1601518_1601980_+,NA|62aa|up_7|NZ_CP038886.1_1604913_1605099_+,NA|105aa|up_2|NZ_CP038886.1_1609546_1609861_-,NA|87aa|up_1|NZ_CP038886.1_1610117_1610378_+,NA|86aa|down_0|NZ_CP038886.1_1613259_1613517_+,NA|204aa|down_4|NZ_CP038886.1_1617519_1618131_+,NA|87aa|down_5|NZ_CP038886.1_1618315_1618576_+,NA|67aa|down_7|NZ_CP038886.1_1620417_1620618_-	NA|154aa|up_9|NZ_CP038886.1_1601518_1601980_+	NA	NA|652aa|up_8|NZ_CP038886.1_1602278_1604234_-	PRK11619, PRK11619, lytic murein transglycosylase; Provisional	NA|62aa|up_7|NZ_CP038886.1_1604913_1605099_+	NA	NA|330aa|up_6|NZ_CP038886.1_1605432_1606422_+	COG1054, COG1054, Predicted sulfurtransferase [General function prediction only]	NA|192aa|up_5|NZ_CP038886.1_1606515_1607091_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|122aa|up_4|NZ_CP038886.1_1607036_1607402_-	pfam13384, HTH_23, Homeodomain-like domain	NA|541aa|up_3|NZ_CP038886.1_1607833_1609456_+	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|105aa|up_2|NZ_CP038886.1_1609546_1609861_-	NA	NA|87aa|up_1|NZ_CP038886.1_1610117_1610378_+	NA	NA|163aa|up_0|NZ_CP038886.1_1610397_1610886_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|86aa|down_0|NZ_CP038886.1_1613259_1613517_+	NA	NA|313aa|down_1|NZ_CP038886.1_1613586_1614525_+	pfam00665, rve, Integrase core domain	NA|522aa|down_2|NZ_CP038886.1_1614550_1616116_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|276aa|down_3|NZ_CP038886.1_1616325_1617153_-	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti	NA|204aa|down_4|NZ_CP038886.1_1617519_1618131_+	NA	NA|87aa|down_5|NZ_CP038886.1_1618315_1618576_+	NA	NA|318aa|down_6|NZ_CP038886.1_1619037_1619991_+	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms]	NA|67aa|down_7|NZ_CP038886.1_1620417_1620618_-	NA	NA|269aa|down_8|NZ_CP038886.1_1620992_1621799_+	COG3963, COG3963, Phospholipid N-methyltransferase [Lipid metabolism]	NA|324aa|down_9|NZ_CP038886.1_1621904_1622876_-	cd13643, PBP2_BCP_2, Substrate-binding domain of osmoregulatory ABC-type glycine betaine/choline/L-proline transport system-like; the type 2 periplasmic-binding protein fold
GCF_009708315.1_ASM970831v1	NZ_CP038887	Piscirickettsia salmonis strain Psal-004 plasmid unnamed1, complete sequence	1	92177-92400	1	CRT	no		RT	Orphan	AAACGGAACACAAACGGAACACAAA	25	0	0	NA	NA	NA	3	3	Orphan	DEDDh,csa3,RT,DinG,cas3	NA|68aa|up_9|NZ_CP038887.1_82668_82872_+,NA|57aa|up_8|NZ_CP038887.1_82868_83039_+,NA|86aa|up_5|NZ_CP038887.1_85066_85324_-,NA|57aa|up_3|NZ_CP038887.1_87828_87999_+,NA|563aa|down_2|NZ_CP038887.1_94534_96223_-,NA|160aa|down_4|NZ_CP038887.1_97775_98255_+,NA|243aa|down_5|NZ_CP038887.1_98312_99041_+,NA|327aa|down_6|NZ_CP038887.1_99497_100478_+,NA|60aa|down_8|NZ_CP038887.1_101655_101835_+,NA|99aa|down_9|NZ_CP038887.1_102053_102350_+	NA|68aa|up_9|NZ_CP038887.1_82668_82872_+	NA	NA|57aa|up_8|NZ_CP038887.1_82868_83039_+	NA	NA|361aa|up_7|NZ_CP038887.1_83225_84308_-	pfam00665, rve, Integrase core domain	NA|167aa|up_6|NZ_CP038887.1_84464_84965_+	pfam14319, Zn_Tnp_IS91, Transposase zinc-binding domain	NA|86aa|up_5|NZ_CP038887.1_85066_85324_-	NA	NA|396aa|up_4|NZ_CP038887.1_85392_86579_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|57aa|up_3|NZ_CP038887.1_87828_87999_+	NA	NA|272aa|up_2|NZ_CP038887.1_88328_89144_+	pfam04986, Y2_Tnp, Putative transposase	NA|197aa|up_1|NZ_CP038887.1_89389_89980_+	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	NA|340aa|up_0|NZ_CP038887.1_90945_91965_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|56aa|down_0|NZ_CP038887.1_93614_93782_-	PRK05771, PRK05771, V-type ATP synthase subunit I; Validated	NA|243aa|down_1|NZ_CP038887.1_93837_94566_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|563aa|down_2|NZ_CP038887.1_94534_96223_-	NA	NA|325aa|down_3|NZ_CP038887.1_96566_97541_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|160aa|down_4|NZ_CP038887.1_97775_98255_+	NA	NA|243aa|down_5|NZ_CP038887.1_98312_99041_+	NA	NA|327aa|down_6|NZ_CP038887.1_99497_100478_+	NA	NA|243aa|down_7|NZ_CP038887.1_100623_101352_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|60aa|down_8|NZ_CP038887.1_101655_101835_+	NA	NA|99aa|down_9|NZ_CP038887.1_102053_102350_+	NA
