assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009708695.1_ASM970869v1	NZ_CP038913	Piscirickettsia salmonis strain Psal-010a chromosome, complete genome	1	363129-363258	1	CRISPRCasFinder	no		DEDDh,csa3,RT,DinG,cas3	Orphan	ATAACTGTAAGGAGAAGGCATCGTTTTTCCTTATTGTATTTTTTAA	46	1	56	363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212|363175-363212	NZ_CP038913.1_155094-155057|NZ_CP038913.1_256590-256553|NZ_CP038913.1_962116-962079|NZ_CP038913.1_1051666-1051629|NZ_CP038913.1_1060536-1060499|NZ_CP038913.1_1092415-1092378|NZ_CP038913.1_1174305-1174268|NZ_CP038913.1_1183606-1183569|NZ_CP038913.1_1482876-1482839|NZ_CP038913.1_1483010-1482973|NZ_CP038913.1_1753842-1753805|NZ_CP038913.1_2299558-2299521|NZ_CP038913.1_2403131-2403094|NZ_CP038913.1_2439910-2439873|NZ_CP038913.1_2628907-2628870|NZ_CP038913.1_2748418-2748381|NZ_CP038913.1_46478-46515|NZ_CP038913.1_157364-157401|NZ_CP038913.1_178806-178843|NZ_CP038913.1_183188-183225|NZ_CP038913.1_225980-226017|NZ_CP038913.1_461923-461960|NZ_CP038913.1_603555-603592|NZ_CP038913.1_965331-965368|NZ_CP038913.1_1253026-1253063|NZ_CP038913.1_1363872-1363909|NZ_CP038913.1_1521445-1521482|NZ_CP038913.1_1566267-1566304|NZ_CP038913.1_1598330-1598367|NZ_CP038913.1_1612694-1612731|NZ_CP038913.1_1703257-1703294|NZ_CP038913.1_1708832-1708869|NZ_CP038913.1_2036750-2036787|NZ_CP038913.1_2040256-2040293|NZ_CP038913.1_2074584-2074621|NZ_CP038913.1_2098732-2098769|NZ_CP038913.1_2212306-2212343|NZ_CP038913.1_2270796-2270833|NZ_CP038913.1_2303854-2303891|NZ_CP038913.1_2330452-2330489|NZ_CP038913.1_2331569-2331606|NZ_CP038913.1_2386480-2386517|NZ_CP038913.1_2430107-2430144|NZ_CP038913.1_2525535-2525572|NZ_CP038913.1_2527687-2527724|NZ_CP038913.1_2583339-2583376|NZ_CP038913.1_2809908-2809945|NZ_CP038913.1_2813734-2813771|NZ_CP038913.1_3016045-3016082|NZ_CP038913.1_1060402-1060365|NZ_CP038913.1_2222485-2222448|NZ_CP038913.1_352922-352959|NZ_CP038913.1_2212440-2212477|NZ_CP038915.1_5737-5774|NZ_CP038914.1_66641-66678|NZ_CP038914.1_30986-30949	NA	1	1	Orphan	DEDDh,csa3,RT,DinG,cas3	NA|73aa|up_9|NZ_CP038913.1_353631_353850_-,NA|65aa|up_5|NZ_CP038913.1_357831_358026_-,NA|141aa|up_3|NZ_CP038913.1_359348_359771_+,NA|105aa|up_0|NZ_CP038913.1_361907_362222_-,NA|97aa|down_0|NZ_CP038913.1_363787_364078_+,NA|233aa|down_1|NZ_CP038913.1_364115_364814_+,NA|99aa|down_2|NZ_CP038913.1_364830_365127_+,NA|384aa|down_3|NZ_CP038913.1_365244_366396_+,NA|192aa|down_4|NZ_CP038913.1_366668_367244_+	NA|73aa|up_9|NZ_CP038913.1_353631_353850_-	NA	NA|325aa|up_8|NZ_CP038913.1_354217_355192_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|85aa|up_7|NZ_CP038913.1_355730_355985_+	PRK08116, PRK08116, hypothetical protein; Validated	NA|329aa|up_6|NZ_CP038913.1_356707_357694_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|65aa|up_5|NZ_CP038913.1_357831_358026_-	NA	NA|216aa|up_4|NZ_CP038913.1_358708_359356_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|141aa|up_3|NZ_CP038913.1_359348_359771_+	NA	NA|468aa|up_2|NZ_CP038913.1_359932_361336_+	cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like	NA|192aa|up_1|NZ_CP038913.1_361386_361962_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|105aa|up_0|NZ_CP038913.1_361907_362222_-	NA	NA|97aa|down_0|NZ_CP038913.1_363787_364078_+	NA	NA|233aa|down_1|NZ_CP038913.1_364115_364814_+	NA	NA|99aa|down_2|NZ_CP038913.1_364830_365127_+	NA	NA|384aa|down_3|NZ_CP038913.1_365244_366396_+	NA	NA|192aa|down_4|NZ_CP038913.1_366668_367244_+	NA	NA|278aa|down_5|NZ_CP038913.1_367301_368135_-	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|395aa|down_6|NZ_CP038913.1_368250_369435_+	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism]	NA|315aa|down_7|NZ_CP038913.1_369453_370398_-	PRK10260, PRK10260, L,D-transpeptidase; Provisional	NA|262aa|down_8|NZ_CP038913.1_370702_371488_+	TIGR03545, TIGR03545, TIGR03545 family protein	NA|123aa|down_9|NZ_CP038913.1_371605_371974_-	COG3603, COG3603, Uncharacterized conserved protein [Function unknown]
GCF_009708695.1_ASM970869v1	NZ_CP038913	Piscirickettsia salmonis strain Psal-010a chromosome, complete genome	2	685144-685264	2	CRISPRCasFinder	no		DEDDh,csa3,RT,DinG,cas3	Orphan	AGCTTATCAATGGTTAGTAGCCCTTGGACTTAATCAA	37	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,RT,DinG,cas3	NA,NA|141aa|down_0|NZ_CP038913.1_685420_685843_+,NA|137aa|down_1|NZ_CP038913.1_686086_686497_-,NA|88aa|down_2|NZ_CP038913.1_686765_687029_-,NA|172aa|down_3|NZ_CP038913.1_687261_687777_-,NA|158aa|down_7|NZ_CP038913.1_693164_693638_+	NA|265aa|up_9|NZ_CP038913.1_672769_673564_+	PRK01827, thyA, thymidylate synthase; Reviewed	NA|340aa|up_8|NZ_CP038913.1_673665_674685_+	TIGR00512, methylthioribose-1-phosphate_isomerase_predicted, S-methyl-5-thioribose-1-phosphate isomerase	NA|204aa|up_7|NZ_CP038913.1_674731_675343_+	PRK09220, PRK09220, methylthioribulose 1-phosphate dehydratase	NA|229aa|up_6|NZ_CP038913.1_675346_676033_+	cd01629, HAD_EP, Enolase-phosphatase similar to human enolase-phosphatase E1 and and Xanthomonas oryzae pv	NA|181aa|up_5|NZ_CP038913.1_676029_676572_+	COG1791, COG1791, Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]	NA|396aa|up_4|NZ_CP038913.1_678384_679572_-	PRK09550, mtnK, methylthioribose kinase; Reviewed	NA|242aa|up_3|NZ_CP038913.1_679817_680543_+	cd14843, D-Ala-D-Ala_dipeptidase_like, D-Ala-D-Ala dipeptidase, includes uncharacterized enzymes	NA|265aa|up_2|NZ_CP038913.1_680721_681516_+	pfam01863, DUF45, Protein of unknown function DUF45	NA|132aa|up_1|NZ_CP038913.1_681512_681908_-	pfam17775, UPF0225, UPF0225 domain	NA|155aa|up_0|NZ_CP038913.1_683301_683766_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|141aa|down_0|NZ_CP038913.1_685420_685843_+	NA	NA|137aa|down_1|NZ_CP038913.1_686086_686497_-	NA	NA|88aa|down_2|NZ_CP038913.1_686765_687029_-	NA	NA|172aa|down_3|NZ_CP038913.1_687261_687777_-	NA	NA|337aa|down_4|NZ_CP038913.1_687921_688932_-	cd00180, PKc, Catalytic domain of Protein Kinases	NA|694aa|down_5|NZ_CP038913.1_689235_691317_-	cd14016, STKc_CK1, Catalytic domain of the Serine/Threonine protein kinase, Casein Kinase 1	NA|420aa|down_6|NZ_CP038913.1_691772_693032_-	PRK14072, PRK14072, diphosphate--fructose-6-phosphate 1-phosphotransferase	NA|158aa|down_7|NZ_CP038913.1_693164_693638_+	NA	NA|461aa|down_8|NZ_CP038913.1_693646_695029_+	TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase	NA|205aa|down_9|NZ_CP038913.1_695021_695636_+	PRK05920, PRK05920, aromatic acid decarboxylase; Validated
GCF_009708695.1_ASM970869v1	NZ_CP038913	Piscirickettsia salmonis strain Psal-010a chromosome, complete genome	3	1617715-1617821	3	CRISPRCasFinder	no		DEDDh,csa3,RT,DinG,cas3	Orphan	GCGCTTGATAATCTCCCTTTGTTTATTAAAATGCAAGA	38	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,RT,DinG,cas3	NA|154aa|up_9|NZ_CP038913.1_1606784_1607246_+,NA|62aa|up_7|NZ_CP038913.1_1610179_1610365_+,NA|105aa|up_2|NZ_CP038913.1_1614812_1615127_-,NA|87aa|up_1|NZ_CP038913.1_1615383_1615644_+,NA|86aa|down_0|NZ_CP038913.1_1618525_1618783_+,NA|204aa|down_4|NZ_CP038913.1_1622785_1623397_+,NA|87aa|down_5|NZ_CP038913.1_1623581_1623842_+,NA|67aa|down_7|NZ_CP038913.1_1625683_1625884_-	NA|154aa|up_9|NZ_CP038913.1_1606784_1607246_+	NA	NA|652aa|up_8|NZ_CP038913.1_1607544_1609500_-	PRK11619, PRK11619, lytic murein transglycosylase; Provisional	NA|62aa|up_7|NZ_CP038913.1_1610179_1610365_+	NA	NA|330aa|up_6|NZ_CP038913.1_1610698_1611688_+	COG1054, COG1054, Predicted sulfurtransferase [General function prediction only]	NA|192aa|up_5|NZ_CP038913.1_1611781_1612357_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|122aa|up_4|NZ_CP038913.1_1612302_1612668_-	pfam13384, HTH_23, Homeodomain-like domain	NA|541aa|up_3|NZ_CP038913.1_1613099_1614722_+	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|105aa|up_2|NZ_CP038913.1_1614812_1615127_-	NA	NA|87aa|up_1|NZ_CP038913.1_1615383_1615644_+	NA	NA|163aa|up_0|NZ_CP038913.1_1615663_1616152_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|86aa|down_0|NZ_CP038913.1_1618525_1618783_+	NA	NA|313aa|down_1|NZ_CP038913.1_1618852_1619791_+	pfam00665, rve, Integrase core domain	NA|522aa|down_2|NZ_CP038913.1_1619816_1621382_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|276aa|down_3|NZ_CP038913.1_1621591_1622419_-	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti	NA|204aa|down_4|NZ_CP038913.1_1622785_1623397_+	NA	NA|87aa|down_5|NZ_CP038913.1_1623581_1623842_+	NA	NA|318aa|down_6|NZ_CP038913.1_1624303_1625257_+	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms]	NA|67aa|down_7|NZ_CP038913.1_1625683_1625884_-	NA	NA|269aa|down_8|NZ_CP038913.1_1626258_1627065_+	COG3963, COG3963, Phospholipid N-methyltransferase [Lipid metabolism]	NA|324aa|down_9|NZ_CP038913.1_1627170_1628142_-	cd13643, PBP2_BCP_2, Substrate-binding domain of osmoregulatory ABC-type glycine betaine/choline/L-proline transport system-like; the type 2 periplasmic-binding protein fold
GCF_009708695.1_ASM970869v1	NZ_CP038914	Piscirickettsia salmonis strain Psal-010a plasmid unnamed1, complete sequence	1	1232-1455	1	CRT	no		RT	Orphan	AAACGGAACACAAACGGAACACAAA	25	0	0	NA	NA	NA	3	3	Orphan	DEDDh,csa3,RT,DinG,cas3	NA,NA|563aa|down_2|NZ_CP038914.1_3589_5278_-,NA|163aa|down_4|NZ_CP038914.1_6821_7310_+,NA|243aa|down_5|NZ_CP038914.1_7367_8096_+,NA|327aa|down_6|NZ_CP038914.1_8552_9533_+,NA|60aa|down_8|NZ_CP038914.1_10710_10890_+,NA|99aa|down_9|NZ_CP038914.1_11108_11405_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|340aa|up_0|NZ_CP038914.1_0_1020_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|56aa|down_0|NZ_CP038914.1_2669_2837_-	PRK05771, PRK05771, V-type ATP synthase subunit I; Validated	NA|243aa|down_1|NZ_CP038914.1_2892_3621_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|563aa|down_2|NZ_CP038914.1_3589_5278_-	NA	NA|325aa|down_3|NZ_CP038914.1_5621_6596_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|163aa|down_4|NZ_CP038914.1_6821_7310_+	NA	NA|243aa|down_5|NZ_CP038914.1_7367_8096_+	NA	NA|327aa|down_6|NZ_CP038914.1_8552_9533_+	NA	NA|243aa|down_7|NZ_CP038914.1_9678_10407_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|60aa|down_8|NZ_CP038914.1_10710_10890_+	NA	NA|99aa|down_9|NZ_CP038914.1_11108_11405_+	NA
