assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009708815.1_ASM970881v1	NZ_CP038947	Piscirickettsia salmonis strain Psal-028 chromosome, complete genome	1	360528-360657	1	CRISPRCasFinder	no		DEDDh,RT,DinG,cas3,csa3	Orphan	ATAACTGTAAGGAGAAGGCATCGTTTTTCCTTATTGTATTTTTTAA	46	1	49	360574-360611|360574-360611|360574-360611|360574-360611|360574-360611|360574-360611|360574-360611|360574-360611|360574-360611|360574-360611|360574-360611|360574-360611|360574-360611|360574-360611|360574-360611|360574-360611|360574-360611|360574-360611|360574-360611|360574-360611|360574-360611|360574-360611|360574-360611|360574-360611|360574-360611|360574-360611|360574-360611|360574-360611|360574-360611|360574-360611|360574-360611|360574-360611|360574-360611|360574-360611|360574-360611|360574-360611|360574-360611|360574-360611|360574-360611|360574-360611|360574-360611|360574-360611|360574-360611|360574-360611|360574-360611|360574-360611|360574-360611|360574-360611|360574-360611	NZ_CP038951.1_30344-30307|NZ_CP038948.1_85705-85668|NZ_CP038947.1_256376-256339|NZ_CP038947.1_337556-337519|NZ_CP038947.1_458573-458536|NZ_CP038947.1_700365-700328|NZ_CP038947.1_724346-724309|NZ_CP038947.1_782158-782121|NZ_CP038947.1_884208-884171|NZ_CP038947.1_933416-933379|NZ_CP038947.1_1364124-1364087|NZ_CP038947.1_1386211-1386174|NZ_CP038947.1_1420289-1420252|NZ_CP038947.1_1545487-1545450|NZ_CP038947.1_1575255-1575218|NZ_CP038947.1_1739491-1739454|NZ_CP038947.1_1764885-1764848|NZ_CP038947.1_1806672-1806635|NZ_CP038947.1_1948596-1948559|NZ_CP038947.1_1986636-1986599|NZ_CP038947.1_2249103-2249066|NZ_CP038947.1_2342939-2342902|NZ_CP038947.1_2711133-2711096|NZ_CP038947.1_3001392-3001355|NZ_CP038947.1_46489-46526|NZ_CP038947.1_177199-177236|NZ_CP038947.1_181871-181908|NZ_CP038947.1_225188-225225|NZ_CP038947.1_459863-459900|NZ_CP038947.1_511529-511566|NZ_CP038947.1_559377-559414|NZ_CP038947.1_676479-676516|NZ_CP038947.1_916765-916802|NZ_CP038947.1_1028267-1028304|NZ_CP038947.1_1096554-1096591|NZ_CP038947.1_1138505-1138542|NZ_CP038947.1_1744138-1744175|NZ_CP038947.1_1936671-1936708|NZ_CP038947.1_1976591-1976628|NZ_CP038947.1_2052755-2052792|NZ_CP038947.1_2066890-2066927|NZ_CP038947.1_2175450-2175487|NZ_CP038947.1_2178368-2178405|NZ_CP038947.1_2255308-2255345|NZ_CP038947.1_2346165-2346202|NZ_CP038947.1_2802767-2802804|NZ_CP038947.1_3005487-3005524|NZ_CP038947.1_3016347-3016384|NZ_CP038947.1_1141066-1141029	NA	1	1	Orphan	DEDDh,RT,DinG,cas3,csa3	NA|290aa|up_9|NZ_CP038947.1_349533_350403_-,NA|243aa|up_8|NZ_CP038947.1_350547_351276_-,NA|73aa|up_7|NZ_CP038947.1_352138_352357_-,NA|65aa|up_4|NZ_CP038947.1_355231_355426_-,NA|105aa|up_0|NZ_CP038947.1_359306_359621_-,NA|97aa|down_0|NZ_CP038947.1_361474_361765_+,NA|233aa|down_1|NZ_CP038947.1_361802_362501_+,NA|99aa|down_2|NZ_CP038947.1_362517_362814_+,NA|282aa|down_3|NZ_CP038947.1_362937_363783_+,NA|128aa|down_4|NZ_CP038947.1_363987_364371_+,NA|192aa|down_5|NZ_CP038947.1_364643_365219_+,NA|262aa|down_9|NZ_CP038947.1_368677_369463_+	NA|290aa|up_9|NZ_CP038947.1_349533_350403_-	NA	NA|243aa|up_8|NZ_CP038947.1_350547_351276_-	NA	NA|73aa|up_7|NZ_CP038947.1_352138_352357_-	NA	NA|85aa|up_6|NZ_CP038947.1_353130_353385_+	PRK08116, PRK08116, hypothetical protein; Validated	NA|329aa|up_5|NZ_CP038947.1_354107_355094_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|65aa|up_4|NZ_CP038947.1_355231_355426_-	NA	NA|354aa|up_3|NZ_CP038947.1_356108_357170_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|468aa|up_2|NZ_CP038947.1_357331_358735_+	cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like	NA|192aa|up_1|NZ_CP038947.1_358785_359361_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|105aa|up_0|NZ_CP038947.1_359306_359621_-	NA	NA|97aa|down_0|NZ_CP038947.1_361474_361765_+	NA	NA|233aa|down_1|NZ_CP038947.1_361802_362501_+	NA	NA|99aa|down_2|NZ_CP038947.1_362517_362814_+	NA	NA|282aa|down_3|NZ_CP038947.1_362937_363783_+	NA	NA|128aa|down_4|NZ_CP038947.1_363987_364371_+	NA	NA|192aa|down_5|NZ_CP038947.1_364643_365219_+	NA	NA|278aa|down_6|NZ_CP038947.1_365276_366110_-	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|395aa|down_7|NZ_CP038947.1_366225_367410_+	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism]	NA|315aa|down_8|NZ_CP038947.1_367428_368373_-	PRK10260, PRK10260, L,D-transpeptidase; Provisional	NA|262aa|down_9|NZ_CP038947.1_368677_369463_+	NA
GCF_009708815.1_ASM970881v1	NZ_CP038947	Piscirickettsia salmonis strain Psal-028 chromosome, complete genome	2	1404994-1405100	2	CRISPRCasFinder	no		DEDDh,RT,DinG,cas3,csa3	Orphan	GCGCTTGATAATCTCCCTTTGTTTATTAAAATGCAAGA	38	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,DinG,cas3,csa3	NA|154aa|up_6|NZ_CP038947.1_1393811_1394273_+,NA|62aa|up_4|NZ_CP038947.1_1397208_1397394_+,NA|105aa|up_2|NZ_CP038947.1_1402090_1402405_-,NA|87aa|up_1|NZ_CP038947.1_1402662_1402923_+,NA|204aa|down_3|NZ_CP038947.1_1410063_1410675_+,NA|87aa|down_4|NZ_CP038947.1_1410859_1411120_+,NA|67aa|down_6|NZ_CP038947.1_1412957_1413158_-	NA|421aa|up_9|NZ_CP038947.1_1389205_1390468_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|602aa|up_8|NZ_CP038947.1_1390555_1392361_-	PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional	NA|266aa|up_7|NZ_CP038947.1_1392844_1393642_-	pfam05708, Peptidase_C92, Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family	NA|154aa|up_6|NZ_CP038947.1_1393811_1394273_+	NA	NA|652aa|up_5|NZ_CP038947.1_1394571_1396527_-	PRK11619, PRK11619, lytic murein transglycosylase; Provisional	NA|62aa|up_4|NZ_CP038947.1_1397208_1397394_+	NA	NA|330aa|up_3|NZ_CP038947.1_1397727_1398717_+	COG1054, COG1054, Predicted sulfurtransferase [General function prediction only]	NA|105aa|up_2|NZ_CP038947.1_1402090_1402405_-	NA	NA|87aa|up_1|NZ_CP038947.1_1402662_1402923_+	NA	NA|163aa|up_0|NZ_CP038947.1_1402942_1403431_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|313aa|down_0|NZ_CP038947.1_1406133_1407072_+	pfam00665, rve, Integrase core domain	NA|522aa|down_1|NZ_CP038947.1_1407097_1408663_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|276aa|down_2|NZ_CP038947.1_1408869_1409697_-	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti	NA|204aa|down_3|NZ_CP038947.1_1410063_1410675_+	NA	NA|87aa|down_4|NZ_CP038947.1_1410859_1411120_+	NA	NA|141aa|down_5|NZ_CP038947.1_1412112_1412535_+	cd19924, REC_CheV-like, phosphoacceptor receiver (REC) domain of chemotaxis protein CheV and similar proteins	NA|67aa|down_6|NZ_CP038947.1_1412957_1413158_-	NA	NA|269aa|down_7|NZ_CP038947.1_1413532_1414339_+	COG3963, COG3963, Phospholipid N-methyltransferase [Lipid metabolism]	NA|324aa|down_8|NZ_CP038947.1_1414444_1415416_-	cd13643, PBP2_BCP_2, Substrate-binding domain of osmoregulatory ABC-type glycine betaine/choline/L-proline transport system-like; the type 2 periplasmic-binding protein fold	NA|324aa|down_9|NZ_CP038947.1_1415397_1416369_-	cd13643, PBP2_BCP_2, Substrate-binding domain of osmoregulatory ABC-type glycine betaine/choline/L-proline transport system-like; the type 2 periplasmic-binding protein fold
GCF_009708815.1_ASM970881v1	NZ_CP038947	Piscirickettsia salmonis strain Psal-028 chromosome, complete genome	3	2631663-2631783	3	CRISPRCasFinder	no		DEDDh,RT,DinG,cas3,csa3	Orphan	TTGATTAAGTCCAAGGGCTGCTAACCATTGATAAGCT	37	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,DinG,cas3,csa3	NA|158aa|up_8|NZ_CP038947.1_2623000_2623474_-,NA|172aa|up_4|NZ_CP038947.1_2628861_2629377_+,NA|88aa|up_3|NZ_CP038947.1_2629609_2629873_+,NA|137aa|up_2|NZ_CP038947.1_2630141_2630552_+,NA|141aa|up_1|NZ_CP038947.1_2630795_2631218_-,NA|47aa|up_0|NZ_CP038947.1_2631250_2631391_+,NA	NA|461aa|up_9|NZ_CP038947.1_2621609_2622992_-	TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase	NA|158aa|up_8|NZ_CP038947.1_2623000_2623474_-	NA	NA|420aa|up_7|NZ_CP038947.1_2623606_2624866_+	PRK14072, PRK14072, diphosphate--fructose-6-phosphate 1-phosphotransferase	NA|694aa|up_6|NZ_CP038947.1_2625321_2627403_+	cd14016, STKc_CK1, Catalytic domain of the Serine/Threonine protein kinase, Casein Kinase 1	NA|337aa|up_5|NZ_CP038947.1_2627706_2628717_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|172aa|up_4|NZ_CP038947.1_2628861_2629377_+	NA	NA|88aa|up_3|NZ_CP038947.1_2629609_2629873_+	NA	NA|137aa|up_2|NZ_CP038947.1_2630141_2630552_+	NA	NA|141aa|up_1|NZ_CP038947.1_2630795_2631218_-	NA	NA|47aa|up_0|NZ_CP038947.1_2631250_2631391_+	NA	NA|155aa|down_0|NZ_CP038947.1_2633160_2633625_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|161aa|down_1|NZ_CP038947.1_2633681_2634164_-	pfam01710, HTH_Tnp_IS630, Transposase	NA|132aa|down_2|NZ_CP038947.1_2635018_2635414_+	pfam17775, UPF0225, UPF0225 domain	NA|265aa|down_3|NZ_CP038947.1_2635410_2636205_-	pfam01863, DUF45, Protein of unknown function DUF45	NA|242aa|down_4|NZ_CP038947.1_2636383_2637109_-	cd14843, D-Ala-D-Ala_dipeptidase_like, D-Ala-D-Ala dipeptidase, includes uncharacterized enzymes	NA|396aa|down_5|NZ_CP038947.1_2637354_2638542_+	PRK09550, mtnK, methylthioribose kinase; Reviewed	NA|181aa|down_6|NZ_CP038947.1_2639118_2639661_-	COG1791, COG1791, Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]	NA|229aa|down_7|NZ_CP038947.1_2639657_2640344_-	cd01629, HAD_EP, Enolase-phosphatase similar to human enolase-phosphatase E1 and and Xanthomonas oryzae pv	NA|204aa|down_8|NZ_CP038947.1_2640347_2640959_-	PRK09220, PRK09220, methylthioribulose 1-phosphate dehydratase	NA|340aa|down_9|NZ_CP038947.1_2641005_2642025_-	TIGR00512, methylthioribose-1-phosphate_isomerase_predicted, S-methyl-5-thioribose-1-phosphate isomerase
GCF_009708815.1_ASM970881v1	NZ_CP038948	Piscirickettsia salmonis strain Psal-028 plasmid unnamed1, complete sequence	1	1232-1455	1	CRT	no		RT	Orphan	AAACGGAACACAAACGGAACACAAA	25	0	0	NA	NA	NA	3	3	Orphan	DEDDh,RT,DinG,cas3,csa3	NA,NA|86aa|down_3|NZ_CP038948.1_6564_6822_-,NA|155aa|down_4|NZ_CP038948.1_7955_8420_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|340aa|up_0|NZ_CP038948.1_0_1020_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|243aa|down_0|NZ_CP038948.1_1943_2672_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|859aa|down_1|NZ_CP038948.1_2875_5452_+	TIGR00601, UV_excision_repair_protein_RAD23_homolog_A, UV excision repair protein Rad23	NA|326aa|down_2|NZ_CP038948.1_5568_6546_-	pfam13737, DDE_Tnp_1_5, Transposase DDE domain	NA|86aa|down_3|NZ_CP038948.1_6564_6822_-	NA	NA|155aa|down_4|NZ_CP038948.1_7955_8420_+	NA	NA|57aa|down_5|NZ_CP038948.1_8758_8929_+	pfam14319, Zn_Tnp_IS91, Transposase zinc-binding domain	NA|243aa|down_6|NZ_CP038948.1_10599_11328_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|453aa|down_7|NZ_CP038948.1_11511_12870_-	cd18013, DEXQc_bact_SNF2, DEXQ-box helicase domain of bacterial SNF2 family proteins	NA|189aa|down_8|NZ_CP038948.1_12959_13526_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|229aa|down_9|NZ_CP038948.1_13529_14216_-	COG3177, COG3177, Fic family protein [Function unknown]
