assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009708975.1_ASM970897v1	NZ_CP039035	Piscirickettsia salmonis strain Psal-071 chromosome, complete genome	1	360384-360513	1	CRISPRCasFinder	no		DEDDh,RT,DinG,cas3,csa3	Orphan	ATAACTGTAAGGAGAAGGCATCGTTTTTCCTTATTGTATTTTTTAA	46	1	50	360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467|360430-360467	NZ_CP039039.1_30344-30307|NZ_CP039036.1_23925-23888|NZ_CP039035.1_256088-256051|NZ_CP039035.1_337412-337375|NZ_CP039035.1_458429-458392|NZ_CP039035.1_699932-699895|NZ_CP039035.1_723913-723876|NZ_CP039035.1_781725-781688|NZ_CP039035.1_881411-881374|NZ_CP039035.1_925989-925952|NZ_CP039035.1_1356681-1356644|NZ_CP039035.1_1378768-1378731|NZ_CP039035.1_1412846-1412809|NZ_CP039035.1_1538044-1538007|NZ_CP039035.1_1567812-1567775|NZ_CP039035.1_1732720-1732683|NZ_CP039035.1_1758114-1758077|NZ_CP039035.1_1799901-1799864|NZ_CP039035.1_1955538-1955501|NZ_CP039035.1_1993578-1993541|NZ_CP039035.1_2256045-2256008|NZ_CP039035.1_2349593-2349556|NZ_CP039035.1_2717788-2717751|NZ_CP039035.1_3008047-3008010|NZ_CP039035.1_46489-46526|NZ_CP039035.1_177199-177236|NZ_CP039035.1_181871-181908|NZ_CP039035.1_225188-225225|NZ_CP039035.1_459719-459756|NZ_CP039035.1_511385-511422|NZ_CP039035.1_558945-558982|NZ_CP039035.1_676046-676083|NZ_CP039035.1_909338-909375|NZ_CP039035.1_1020840-1020877|NZ_CP039035.1_1089127-1089164|NZ_CP039035.1_1131078-1131115|NZ_CP039035.1_1590037-1590074|NZ_CP039035.1_1737367-1737404|NZ_CP039035.1_1943613-1943650|NZ_CP039035.1_1983533-1983570|NZ_CP039035.1_2059697-2059734|NZ_CP039035.1_2073832-2073869|NZ_CP039035.1_2182392-2182429|NZ_CP039035.1_2185310-2185347|NZ_CP039035.1_2261962-2261999|NZ_CP039035.1_2352819-2352856|NZ_CP039035.1_2809422-2809459|NZ_CP039035.1_3012142-3012179|NZ_CP039035.1_3023002-3023039|NZ_CP039035.1_1133639-1133602	NA	1	1	Orphan	DEDDh,RT,DinG,cas3,csa3	NA|290aa|up_9|NZ_CP039035.1_349389_350259_-,NA|243aa|up_8|NZ_CP039035.1_350403_351132_-,NA|73aa|up_7|NZ_CP039035.1_351994_352213_-,NA|65aa|up_4|NZ_CP039035.1_355087_355282_-,NA|105aa|up_0|NZ_CP039035.1_359162_359477_-,NA|97aa|down_0|NZ_CP039035.1_361330_361621_+,NA|233aa|down_1|NZ_CP039035.1_361658_362357_+,NA|99aa|down_2|NZ_CP039035.1_362373_362670_+,NA|282aa|down_3|NZ_CP039035.1_362793_363639_+,NA|128aa|down_4|NZ_CP039035.1_363843_364227_+,NA|192aa|down_5|NZ_CP039035.1_364499_365075_+,NA|262aa|down_9|NZ_CP039035.1_368533_369319_+	NA|290aa|up_9|NZ_CP039035.1_349389_350259_-	NA	NA|243aa|up_8|NZ_CP039035.1_350403_351132_-	NA	NA|73aa|up_7|NZ_CP039035.1_351994_352213_-	NA	NA|85aa|up_6|NZ_CP039035.1_352986_353241_+	PRK08116, PRK08116, hypothetical protein; Validated	NA|329aa|up_5|NZ_CP039035.1_353963_354950_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|65aa|up_4|NZ_CP039035.1_355087_355282_-	NA	NA|354aa|up_3|NZ_CP039035.1_355964_357026_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|468aa|up_2|NZ_CP039035.1_357187_358591_+	cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like	NA|192aa|up_1|NZ_CP039035.1_358641_359217_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|105aa|up_0|NZ_CP039035.1_359162_359477_-	NA	NA|97aa|down_0|NZ_CP039035.1_361330_361621_+	NA	NA|233aa|down_1|NZ_CP039035.1_361658_362357_+	NA	NA|99aa|down_2|NZ_CP039035.1_362373_362670_+	NA	NA|282aa|down_3|NZ_CP039035.1_362793_363639_+	NA	NA|128aa|down_4|NZ_CP039035.1_363843_364227_+	NA	NA|192aa|down_5|NZ_CP039035.1_364499_365075_+	NA	NA|278aa|down_6|NZ_CP039035.1_365132_365966_-	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|395aa|down_7|NZ_CP039035.1_366081_367266_+	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism]	NA|315aa|down_8|NZ_CP039035.1_367284_368229_-	PRK10260, PRK10260, L,D-transpeptidase; Provisional	NA|262aa|down_9|NZ_CP039035.1_368533_369319_+	NA
GCF_009708975.1_ASM970897v1	NZ_CP039035	Piscirickettsia salmonis strain Psal-071 chromosome, complete genome	2	1397551-1397657	2	CRISPRCasFinder	no		DEDDh,RT,DinG,cas3,csa3	Orphan	GCGCTTGATAATCTCCCTTTGTTTATTAAAATGCAAGA	38	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,DinG,cas3,csa3	NA|154aa|up_6|NZ_CP039035.1_1386368_1386830_+,NA|62aa|up_4|NZ_CP039035.1_1389765_1389951_+,NA|105aa|up_2|NZ_CP039035.1_1394647_1394962_-,NA|87aa|up_1|NZ_CP039035.1_1395219_1395480_+,NA|204aa|down_3|NZ_CP039035.1_1402620_1403232_+,NA|87aa|down_4|NZ_CP039035.1_1403416_1403677_+,NA|67aa|down_6|NZ_CP039035.1_1405514_1405715_-	NA|421aa|up_9|NZ_CP039035.1_1381762_1383025_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|602aa|up_8|NZ_CP039035.1_1383112_1384918_-	PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional	NA|266aa|up_7|NZ_CP039035.1_1385401_1386199_-	pfam05708, Peptidase_C92, Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family	NA|154aa|up_6|NZ_CP039035.1_1386368_1386830_+	NA	NA|652aa|up_5|NZ_CP039035.1_1387128_1389084_-	PRK11619, PRK11619, lytic murein transglycosylase; Provisional	NA|62aa|up_4|NZ_CP039035.1_1389765_1389951_+	NA	NA|330aa|up_3|NZ_CP039035.1_1390284_1391274_+	COG1054, COG1054, Predicted sulfurtransferase [General function prediction only]	NA|105aa|up_2|NZ_CP039035.1_1394647_1394962_-	NA	NA|87aa|up_1|NZ_CP039035.1_1395219_1395480_+	NA	NA|163aa|up_0|NZ_CP039035.1_1395499_1395988_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|313aa|down_0|NZ_CP039035.1_1398690_1399629_+	pfam00665, rve, Integrase core domain	NA|522aa|down_1|NZ_CP039035.1_1399654_1401220_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|276aa|down_2|NZ_CP039035.1_1401426_1402254_-	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti	NA|204aa|down_3|NZ_CP039035.1_1402620_1403232_+	NA	NA|87aa|down_4|NZ_CP039035.1_1403416_1403677_+	NA	NA|141aa|down_5|NZ_CP039035.1_1404669_1405092_+	cd19924, REC_CheV-like, phosphoacceptor receiver (REC) domain of chemotaxis protein CheV and similar proteins	NA|67aa|down_6|NZ_CP039035.1_1405514_1405715_-	NA	NA|269aa|down_7|NZ_CP039035.1_1406089_1406896_+	COG3963, COG3963, Phospholipid N-methyltransferase [Lipid metabolism]	NA|324aa|down_8|NZ_CP039035.1_1407001_1407973_-	cd13643, PBP2_BCP_2, Substrate-binding domain of osmoregulatory ABC-type glycine betaine/choline/L-proline transport system-like; the type 2 periplasmic-binding protein fold	NA|324aa|down_9|NZ_CP039035.1_1407954_1408926_-	cd13643, PBP2_BCP_2, Substrate-binding domain of osmoregulatory ABC-type glycine betaine/choline/L-proline transport system-like; the type 2 periplasmic-binding protein fold
GCF_009708975.1_ASM970897v1	NZ_CP039035	Piscirickettsia salmonis strain Psal-071 chromosome, complete genome	3	2638318-2638438	3	CRISPRCasFinder	no		DEDDh,RT,DinG,cas3,csa3	Orphan	TTGATTAAGTCCAAGGGCTGCTAACCATTGATAAGCT	37	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,DinG,cas3,csa3	NA|158aa|up_8|NZ_CP039035.1_2629655_2630129_-,NA|172aa|up_4|NZ_CP039035.1_2635516_2636032_+,NA|88aa|up_3|NZ_CP039035.1_2636264_2636528_+,NA|137aa|up_2|NZ_CP039035.1_2636796_2637207_+,NA|141aa|up_1|NZ_CP039035.1_2637450_2637873_-,NA|47aa|up_0|NZ_CP039035.1_2637905_2638046_+,NA	NA|461aa|up_9|NZ_CP039035.1_2628264_2629647_-	TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase	NA|158aa|up_8|NZ_CP039035.1_2629655_2630129_-	NA	NA|420aa|up_7|NZ_CP039035.1_2630261_2631521_+	PRK14072, PRK14072, diphosphate--fructose-6-phosphate 1-phosphotransferase	NA|694aa|up_6|NZ_CP039035.1_2631976_2634058_+	cd14016, STKc_CK1, Catalytic domain of the Serine/Threonine protein kinase, Casein Kinase 1	NA|337aa|up_5|NZ_CP039035.1_2634361_2635372_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|172aa|up_4|NZ_CP039035.1_2635516_2636032_+	NA	NA|88aa|up_3|NZ_CP039035.1_2636264_2636528_+	NA	NA|137aa|up_2|NZ_CP039035.1_2636796_2637207_+	NA	NA|141aa|up_1|NZ_CP039035.1_2637450_2637873_-	NA	NA|47aa|up_0|NZ_CP039035.1_2637905_2638046_+	NA	NA|155aa|down_0|NZ_CP039035.1_2639815_2640280_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|161aa|down_1|NZ_CP039035.1_2640336_2640819_-	pfam01710, HTH_Tnp_IS630, Transposase	NA|132aa|down_2|NZ_CP039035.1_2641673_2642069_+	pfam17775, UPF0225, UPF0225 domain	NA|265aa|down_3|NZ_CP039035.1_2642065_2642860_-	pfam01863, DUF45, Protein of unknown function DUF45	NA|242aa|down_4|NZ_CP039035.1_2643038_2643764_-	cd14843, D-Ala-D-Ala_dipeptidase_like, D-Ala-D-Ala dipeptidase, includes uncharacterized enzymes	NA|396aa|down_5|NZ_CP039035.1_2644009_2645197_+	PRK09550, mtnK, methylthioribose kinase; Reviewed	NA|181aa|down_6|NZ_CP039035.1_2645773_2646316_-	COG1791, COG1791, Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]	NA|229aa|down_7|NZ_CP039035.1_2646312_2646999_-	cd01629, HAD_EP, Enolase-phosphatase similar to human enolase-phosphatase E1 and and Xanthomonas oryzae pv	NA|204aa|down_8|NZ_CP039035.1_2647002_2647614_-	PRK09220, PRK09220, methylthioribulose 1-phosphate dehydratase	NA|340aa|down_9|NZ_CP039035.1_2647660_2648680_-	TIGR00512, methylthioribose-1-phosphate_isomerase_predicted, S-methyl-5-thioribose-1-phosphate isomerase
GCF_009708975.1_ASM970897v1	NZ_CP039036	Piscirickettsia salmonis strain Psal-071 plasmid unnamed1, complete sequence	1	128460-128683	1	CRT	no	RT	RT	Unclear	AAACGGAACACAAACGGAACACAAA	25	0	0	NA	NA	NA	3	3	Orphan	DEDDh,RT,DinG,cas3,csa3	NA|138aa|up_9|NZ_CP039036.1_117289_117703_-,NA|343aa|up_6|NZ_CP039036.1_120377_121406_+,NA|49aa|up_3|NZ_CP039036.1_124146_124293_+,NA|86aa|down_3|NZ_CP039036.1_133792_134050_-,NA|155aa|down_4|NZ_CP039036.1_135183_135648_+	NA|138aa|up_9|NZ_CP039036.1_117289_117703_-	NA	NA|243aa|up_8|NZ_CP039036.1_117800_118529_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|385aa|up_7|NZ_CP039036.1_118595_119749_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|343aa|up_6|NZ_CP039036.1_120377_121406_+	NA	NA|385aa|up_5|NZ_CP039036.1_121685_122839_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	RT|376aa|up_4|NZ_CP039036.1_122798_123926_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|49aa|up_3|NZ_CP039036.1_124146_124293_+	NA	NA|272aa|up_2|NZ_CP039036.1_124622_125438_+	pfam04986, Y2_Tnp, Putative transposase	NA|197aa|up_1|NZ_CP039036.1_125683_126274_+	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	NA|340aa|up_0|NZ_CP039036.1_127228_128248_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|243aa|down_0|NZ_CP039036.1_129171_129900_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|859aa|down_1|NZ_CP039036.1_130103_132680_+	TIGR00601, UV_excision_repair_protein_RAD23_homolog_A, UV excision repair protein Rad23	NA|326aa|down_2|NZ_CP039036.1_132796_133774_-	pfam13737, DDE_Tnp_1_5, Transposase DDE domain	NA|86aa|down_3|NZ_CP039036.1_133792_134050_-	NA	NA|155aa|down_4|NZ_CP039036.1_135183_135648_+	NA	NA|57aa|down_5|NZ_CP039036.1_135986_136157_+	pfam14319, Zn_Tnp_IS91, Transposase zinc-binding domain	NA|243aa|down_6|NZ_CP039036.1_137827_138556_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|453aa|down_7|NZ_CP039036.1_138739_140098_-	cd18013, DEXQc_bact_SNF2, DEXQ-box helicase domain of bacterial SNF2 family proteins	NA|189aa|down_8|NZ_CP039036.1_140187_140754_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|229aa|down_9|NZ_CP039036.1_140757_141444_-	COG3177, COG3177, Fic family protein [Function unknown]
