assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009709375.1_ASM970937v1	NZ_CP039195	Piscirickettsia salmonis strain Psal-161 chromosome, complete genome	1	351531-351660	1	CRISPRCasFinder	no		DEDDh,csa3,RT,cas3,DinG	Orphan	ATAACTGTAAGGAGAAGGCATCGTTTTTCCTTATTGTATTTTTTAA	46	1	41	351577-351614|351577-351614|351577-351614|351577-351614|351577-351614|351577-351614|351577-351614|351577-351614|351577-351614|351577-351614|351577-351614|351577-351614|351577-351614|351577-351614|351577-351614|351577-351614|351577-351614|351577-351614|351577-351614|351577-351614|351577-351614|351577-351614|351577-351614|351577-351614|351577-351614|351577-351614|351577-351614|351577-351614|351577-351614|351577-351614|351577-351614|351577-351614|351577-351614|351577-351614|351577-351614|351577-351614|351577-351614|351577-351614|351577-351614|351577-351614|351577-351614	NZ_CP039196.1_48778-48741|NZ_CP039196.1_38038-38075|NZ_CP039196.1_146293-146256|NZ_CP039195.1_57067-57030|NZ_CP039195.1_255149-255112|NZ_CP039195.1_782023-781986|NZ_CP039195.1_850593-850556|NZ_CP039195.1_872738-872701|NZ_CP039195.1_1042664-1042627|NZ_CP039195.1_1563896-1563859|NZ_CP039195.1_1612749-1612712|NZ_CP039195.1_1959046-1959009|NZ_CP039195.1_1999567-1999530|NZ_CP039195.1_2070048-2070011|NZ_CP039195.1_2177484-2177447|NZ_CP039195.1_2406020-2405983|NZ_CP039195.1_2523926-2523889|NZ_CP039195.1_2539954-2539917|NZ_CP039195.1_2626908-2626871|NZ_CP039195.1_2928040-2928003|NZ_CP039195.1_46495-46532|NZ_CP039195.1_177366-177403|NZ_CP039195.1_182038-182075|NZ_CP039195.1_224248-224285|NZ_CP039195.1_287771-287808|NZ_CP039195.1_449617-449654|NZ_CP039195.1_519371-519408|NZ_CP039195.1_785249-785286|NZ_CP039195.1_1121798-1121835|NZ_CP039195.1_1308380-1308417|NZ_CP039195.1_1350232-1350269|NZ_CP039195.1_1374367-1374404|NZ_CP039195.1_1529772-1529809|NZ_CP039195.1_1561745-1561782|NZ_CP039195.1_2160835-2160872|NZ_CP039195.1_2302570-2302607|NZ_CP039195.1_2359400-2359437|NZ_CP039195.1_2716966-2717003|NZ_CP039195.1_2914849-2914886|NZ_CP039195.1_2924603-2924640|NZ_CP039195.1_602889-602926	NA	1	1	Orphan	DEDDh,csa3,RT,cas3,DinG	NA|485aa|up_9|NZ_CP039195.1_340824_342279_-,NA|73aa|up_8|NZ_CP039195.1_343141_343360_-,NA|65aa|up_5|NZ_CP039195.1_346234_346429_-,NA|105aa|up_1|NZ_CP039195.1_350309_350624_-,NA|97aa|down_0|NZ_CP039195.1_352189_352480_+,NA|233aa|down_1|NZ_CP039195.1_352517_353216_+,NA|99aa|down_2|NZ_CP039195.1_353232_353529_+,NA|263aa|down_3|NZ_CP039195.1_353709_354498_+,NA|128aa|down_4|NZ_CP039195.1_354702_355086_+,NA|192aa|down_5|NZ_CP039195.1_355358_355934_+	NA|485aa|up_9|NZ_CP039195.1_340824_342279_-	NA	NA|73aa|up_8|NZ_CP039195.1_343141_343360_-	NA	NA|85aa|up_7|NZ_CP039195.1_344133_344388_+	PRK08116, PRK08116, hypothetical protein; Validated	NA|329aa|up_6|NZ_CP039195.1_345110_346097_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|65aa|up_5|NZ_CP039195.1_346234_346429_-	NA	NA|354aa|up_4|NZ_CP039195.1_347111_348173_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|468aa|up_3|NZ_CP039195.1_348334_349738_+	cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like	NA|192aa|up_2|NZ_CP039195.1_349788_350364_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|105aa|up_1|NZ_CP039195.1_350309_350624_-	NA	NA|192aa|up_0|NZ_CP039195.1_350664_351240_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|97aa|down_0|NZ_CP039195.1_352189_352480_+	NA	NA|233aa|down_1|NZ_CP039195.1_352517_353216_+	NA	NA|99aa|down_2|NZ_CP039195.1_353232_353529_+	NA	NA|263aa|down_3|NZ_CP039195.1_353709_354498_+	NA	NA|128aa|down_4|NZ_CP039195.1_354702_355086_+	NA	NA|192aa|down_5|NZ_CP039195.1_355358_355934_+	NA	NA|278aa|down_6|NZ_CP039195.1_355991_356825_-	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|395aa|down_7|NZ_CP039195.1_356940_358125_+	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism]	NA|315aa|down_8|NZ_CP039195.1_358143_359088_-	PRK10260, PRK10260, L,D-transpeptidase; Provisional	NA|262aa|down_9|NZ_CP039195.1_359392_360178_+	TIGR03545, TIGR03545, TIGR03545 family protein
GCF_009709375.1_ASM970937v1	NZ_CP039195	Piscirickettsia salmonis strain Psal-161 chromosome, complete genome	2	516487-516607	2	CRISPRCasFinder	no		DEDDh,csa3,RT,cas3,DinG	Orphan	AGCTTATCAATGGTTAGTAGCCCTTGGACTTAATCAA	37	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,RT,cas3,DinG	NA,NA|47aa|down_0|NZ_CP039195.1_516878_517019_-,NA|141aa|down_1|NZ_CP039195.1_517051_517474_+,NA|137aa|down_2|NZ_CP039195.1_517717_518128_-,NA|71aa|down_5|NZ_CP039195.1_519406_519619_-,NA|158aa|down_9|NZ_CP039195.1_525020_525494_+	NA|296aa|up_9|NZ_CP039195.1_505045_505932_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|243aa|up_8|NZ_CP039195.1_506317_507046_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|195aa|up_7|NZ_CP039195.1_507202_507787_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|228aa|up_6|NZ_CP039195.1_507790_508474_-	pfam02661, Fic, Fic/DOC family	NA|243aa|up_5|NZ_CP039195.1_508955_509684_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|396aa|up_4|NZ_CP039195.1_510015_511203_-	PRK09550, mtnK, methylthioribose kinase; Reviewed	NA|242aa|up_3|NZ_CP039195.1_511448_512174_+	cd14843, D-Ala-D-Ala_dipeptidase_like, D-Ala-D-Ala dipeptidase, includes uncharacterized enzymes	NA|265aa|up_2|NZ_CP039195.1_512352_513147_+	pfam01863, DUF45, Protein of unknown function DUF45	NA|132aa|up_1|NZ_CP039195.1_513143_513539_-	pfam17775, UPF0225, UPF0225 domain	NA|296aa|up_0|NZ_CP039195.1_514222_515109_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|47aa|down_0|NZ_CP039195.1_516878_517019_-	NA	NA|141aa|down_1|NZ_CP039195.1_517051_517474_+	NA	NA|137aa|down_2|NZ_CP039195.1_517717_518128_-	NA	NA|192aa|down_3|NZ_CP039195.1_518458_519034_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|122aa|down_4|NZ_CP039195.1_518979_519345_-	pfam13384, HTH_23, Homeodomain-like domain	NA|71aa|down_5|NZ_CP039195.1_519406_519619_-	NA	NA|337aa|down_6|NZ_CP039195.1_519777_520788_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|694aa|down_7|NZ_CP039195.1_521091_523173_-	cd14016, STKc_CK1, Catalytic domain of the Serine/Threonine protein kinase, Casein Kinase 1	NA|420aa|down_8|NZ_CP039195.1_523628_524888_-	PRK14072, PRK14072, diphosphate--fructose-6-phosphate 1-phosphotransferase	NA|158aa|down_9|NZ_CP039195.1_525020_525494_+	NA
GCF_009709375.1_ASM970937v1	NZ_CP039196	Piscirickettsia salmonis strain Psal-161 plasmid unnamed1, complete sequence	1	55569-56080	1	CRT	no	RT	RT	Unclear	AAACGGAACACAAACGGAACACAAA	25	0	0	NA	NA	NA	7	7	Orphan	DEDDh,csa3,RT,cas3,DinG	NA|86aa|up_9|NZ_CP039196.1_47509_47767_-,NA|49aa|up_3|NZ_CP039196.1_51255_51402_+,NA|111aa|down_4|NZ_CP039196.1_61308_61641_-,NA|354aa|down_8|NZ_CP039196.1_64052_65114_+	NA|86aa|up_9|NZ_CP039196.1_47509_47767_-	NA	NA|336aa|up_8|NZ_CP039196.1_47835_48843_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|122aa|up_7|NZ_CP039196.1_48803_49169_+	pfam13384, HTH_23, Homeodomain-like domain	NA|192aa|up_6|NZ_CP039196.1_49114_49690_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|85aa|up_5|NZ_CP039196.1_49693_49948_-	pfam01527, HTH_Tnp_1, Transposase	RT|376aa|up_4|NZ_CP039196.1_49907_51035_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|49aa|up_3|NZ_CP039196.1_51255_51402_+	NA	NA|272aa|up_2|NZ_CP039196.1_51731_52547_+	pfam04986, Y2_Tnp, Putative transposase	NA|197aa|up_1|NZ_CP039196.1_52792_53383_+	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	NA|340aa|up_0|NZ_CP039196.1_54337_55357_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|243aa|down_0|NZ_CP039196.1_56568_57297_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|859aa|down_1|NZ_CP039196.1_57500_60077_+	TIGR00601, UV_excision_repair_protein_RAD23_homolog_A, UV excision repair protein Rad23	NA|52aa|down_2|NZ_CP039196.1_60371_60527_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|243aa|down_3|NZ_CP039196.1_60550_61279_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|111aa|down_4|NZ_CP039196.1_61308_61641_-	NA	NA|114aa|down_5|NZ_CP039196.1_61711_62053_-	COG5323, COG5323, Uncharacterized conserved protein [Function unknown]	NA|243aa|down_6|NZ_CP039196.1_62208_62937_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|189aa|down_7|NZ_CP039196.1_63143_63710_+	cd06830, PLPDE_III_ADC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Arginine Decarboxylase	NA|354aa|down_8|NZ_CP039196.1_64052_65114_+	NA	NA|361aa|down_9|NZ_CP039196.1_65143_66226_-	pfam00665, rve, Integrase core domain
