assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009709415.1_ASM970941v1	NZ_CP039204	Piscirickettsia salmonis strain Psal-182 chromosome, complete genome	1	361821-361950	1	CRISPRCasFinder	no		DEDDh,RT,DinG,cas3,csa3	Orphan	ATAACTGTAAGGAGAAGGCATCGTTTTTCCTTATTGTATTTTTTAA	46	1	51	361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904|361867-361904	NZ_CP039205.1_85267-85230|NZ_CP039205.1_76414-76451|NZ_CP039205.1_128870-128907|NZ_CP039204.1_255698-255661|NZ_CP039204.1_560521-560484|NZ_CP039204.1_572178-572141|NZ_CP039204.1_745425-745388|NZ_CP039204.1_802230-802193|NZ_CP039204.1_896296-896259|NZ_CP039204.1_922364-922327|NZ_CP039204.1_1531649-1531612|NZ_CP039204.1_1723265-1723228|NZ_CP039204.1_1747413-1747376|NZ_CP039204.1_1969513-1969476|NZ_CP039204.1_2079581-2079544|NZ_CP039204.1_2263107-2263070|NZ_CP039204.1_2328856-2328819|NZ_CP039204.1_2330108-2330071|NZ_CP039204.1_2526089-2526052|NZ_CP039204.1_2692031-2691994|NZ_CP039204.1_46495-46532|NZ_CP039204.1_156778-156815|NZ_CP039204.1_179327-179364|NZ_CP039204.1_183709-183746|NZ_CP039204.1_225087-225124|NZ_CP039204.1_312596-312633|NZ_CP039204.1_461859-461896|NZ_CP039204.1_579089-579126|NZ_CP039204.1_698517-698554|NZ_CP039204.1_886493-886530|NZ_CP039204.1_1013912-1013949|NZ_CP039204.1_1083619-1083656|NZ_CP039204.1_1126755-1126792|NZ_CP039204.1_1290491-1290528|NZ_CP039204.1_1375530-1375567|NZ_CP039204.1_1389896-1389933|NZ_CP039204.1_1485678-1485715|NZ_CP039204.1_1514140-1514177|NZ_CP039204.1_1919263-1919300|NZ_CP039204.1_2019506-2019543|NZ_CP039204.1_2051884-2051921|NZ_CP039204.1_2078460-2078497|NZ_CP039204.1_2111365-2111402|NZ_CP039204.1_2240271-2240308|NZ_CP039204.1_2333041-2333078|NZ_CP039204.1_2480175-2480212|NZ_CP039204.1_2783320-2783357|NZ_CP039204.1_2787146-2787183|NZ_CP039204.1_1959479-1959516|NZ_CP039204.1_2987882-2987919|NZ_CP039207.1_5737-5774	NA	1	1	Orphan	DEDDh,RT,DinG,cas3,csa3	NA|414aa|up_9|NZ_CP039204.1_351073_352315_-,NA|73aa|up_8|NZ_CP039204.1_353390_353609_-,NA|65aa|up_5|NZ_CP039204.1_356483_356678_-,NA|146aa|up_3|NZ_CP039204.1_357985_358423_+,NA|97aa|down_0|NZ_CP039204.1_362479_362770_+,NA|233aa|down_1|NZ_CP039204.1_362807_363506_+,NA|99aa|down_2|NZ_CP039204.1_363522_363819_+,NA|282aa|down_3|NZ_CP039204.1_363942_364788_+,NA|128aa|down_4|NZ_CP039204.1_364992_365376_+,NA|192aa|down_5|NZ_CP039204.1_365648_366224_+	NA|414aa|up_9|NZ_CP039204.1_351073_352315_-	NA	NA|73aa|up_8|NZ_CP039204.1_353390_353609_-	NA	NA|85aa|up_7|NZ_CP039204.1_354382_354637_+	PRK08116, PRK08116, hypothetical protein; Validated	NA|329aa|up_6|NZ_CP039204.1_355359_356346_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|65aa|up_5|NZ_CP039204.1_356483_356678_-	NA	NA|216aa|up_4|NZ_CP039204.1_357360_358008_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|146aa|up_3|NZ_CP039204.1_357985_358423_+	NA	NA|468aa|up_2|NZ_CP039204.1_358584_359988_+	cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like	NA|172aa|up_1|NZ_CP039204.1_360038_360554_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|243aa|up_0|NZ_CP039204.1_360546_361275_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|97aa|down_0|NZ_CP039204.1_362479_362770_+	NA	NA|233aa|down_1|NZ_CP039204.1_362807_363506_+	NA	NA|99aa|down_2|NZ_CP039204.1_363522_363819_+	NA	NA|282aa|down_3|NZ_CP039204.1_363942_364788_+	NA	NA|128aa|down_4|NZ_CP039204.1_364992_365376_+	NA	NA|192aa|down_5|NZ_CP039204.1_365648_366224_+	NA	NA|278aa|down_6|NZ_CP039204.1_366281_367115_-	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|395aa|down_7|NZ_CP039204.1_367230_368415_+	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism]	NA|315aa|down_8|NZ_CP039204.1_368433_369378_-	PRK10260, PRK10260, L,D-transpeptidase; Provisional	NA|262aa|down_9|NZ_CP039204.1_369682_370468_+	TIGR03545, TIGR03545, TIGR03545 family protein
GCF_009709415.1_ASM970941v1	NZ_CP039204	Piscirickettsia salmonis strain Psal-182 chromosome, complete genome	2	1395205-1395311	2	CRISPRCasFinder	no		DEDDh,RT,DinG,cas3,csa3	Orphan	GCGCTTGATAATCTCCCTTTGTTTATTAAAATGCAAGA	38	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,DinG,cas3,csa3	NA|154aa|up_9|NZ_CP039204.1_1383984_1384446_+,NA|53aa|up_7|NZ_CP039204.1_1386866_1387025_-,NA|62aa|up_6|NZ_CP039204.1_1387381_1387567_+,NA|87aa|up_1|NZ_CP039204.1_1392873_1393134_+,NA|86aa|down_0|NZ_CP039204.1_1396015_1396273_+,NA|204aa|down_4|NZ_CP039204.1_1400273_1400885_+,NA|87aa|down_5|NZ_CP039204.1_1401069_1401330_+,NA|67aa|down_7|NZ_CP039204.1_1402883_1403084_-	NA|154aa|up_9|NZ_CP039204.1_1383984_1384446_+	NA	NA|652aa|up_8|NZ_CP039204.1_1384744_1386700_-	PRK11619, PRK11619, lytic murein transglycosylase; Provisional	NA|53aa|up_7|NZ_CP039204.1_1386866_1387025_-	NA	NA|62aa|up_6|NZ_CP039204.1_1387381_1387567_+	NA	NA|330aa|up_5|NZ_CP039204.1_1387900_1388890_+	COG1054, COG1054, Predicted sulfurtransferase [General function prediction only]	NA|192aa|up_4|NZ_CP039204.1_1388983_1389559_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|122aa|up_3|NZ_CP039204.1_1389504_1389870_-	pfam13384, HTH_23, Homeodomain-like domain	NA|541aa|up_2|NZ_CP039204.1_1390301_1391924_+	COG0659, SUL1, Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]	NA|87aa|up_1|NZ_CP039204.1_1392873_1393134_+	NA	NA|163aa|up_0|NZ_CP039204.1_1393153_1393642_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|86aa|down_0|NZ_CP039204.1_1396015_1396273_+	NA	NA|313aa|down_1|NZ_CP039204.1_1396342_1397281_+	pfam00665, rve, Integrase core domain	NA|546aa|down_2|NZ_CP039204.1_1397306_1398944_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|276aa|down_3|NZ_CP039204.1_1399079_1399907_-	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti	NA|204aa|down_4|NZ_CP039204.1_1400273_1400885_+	NA	NA|87aa|down_5|NZ_CP039204.1_1401069_1401330_+	NA	NA|318aa|down_6|NZ_CP039204.1_1401503_1402457_+	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms]	NA|67aa|down_7|NZ_CP039204.1_1402883_1403084_-	NA	NA|269aa|down_8|NZ_CP039204.1_1403458_1404265_+	COG3963, COG3963, Phospholipid N-methyltransferase [Lipid metabolism]	NA|324aa|down_9|NZ_CP039204.1_1404370_1405342_-	cd13643, PBP2_BCP_2, Substrate-binding domain of osmoregulatory ABC-type glycine betaine/choline/L-proline transport system-like; the type 2 periplasmic-binding protein fold
GCF_009709415.1_ASM970941v1	NZ_CP039204	Piscirickettsia salmonis strain Psal-182 chromosome, complete genome	3	2613373-2613493	3	CRISPRCasFinder	no		DEDDh,RT,DinG,cas3,csa3	Orphan	TTGATTAAGTCCAAGGGCTGCTAACCATTGATAAGCT	37	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,DinG,cas3,csa3	NA|158aa|up_7|NZ_CP039204.1_2604998_2605472_-,NA|172aa|up_3|NZ_CP039204.1_2610859_2611375_+,NA|88aa|up_2|NZ_CP039204.1_2611607_2611871_+,NA|137aa|up_1|NZ_CP039204.1_2612139_2612550_+,NA|141aa|up_0|NZ_CP039204.1_2612793_2613216_-,NA	NA|205aa|up_9|NZ_CP039204.1_2603000_2603615_-	PRK05920, PRK05920, aromatic acid decarboxylase; Validated	NA|461aa|up_8|NZ_CP039204.1_2603607_2604990_-	TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase	NA|158aa|up_7|NZ_CP039204.1_2604998_2605472_-	NA	NA|420aa|up_6|NZ_CP039204.1_2605604_2606864_+	PRK14072, PRK14072, diphosphate--fructose-6-phosphate 1-phosphotransferase	NA|694aa|up_5|NZ_CP039204.1_2607319_2609401_+	cd14016, STKc_CK1, Catalytic domain of the Serine/Threonine protein kinase, Casein Kinase 1	NA|337aa|up_4|NZ_CP039204.1_2609704_2610715_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|172aa|up_3|NZ_CP039204.1_2610859_2611375_+	NA	NA|88aa|up_2|NZ_CP039204.1_2611607_2611871_+	NA	NA|137aa|up_1|NZ_CP039204.1_2612139_2612550_+	NA	NA|141aa|up_0|NZ_CP039204.1_2612793_2613216_-	NA	NA|155aa|down_0|NZ_CP039204.1_2614870_2615335_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|160aa|down_1|NZ_CP039204.1_2615391_2615871_-	pfam01710, HTH_Tnp_IS630, Transposase	NA|132aa|down_2|NZ_CP039204.1_2616728_2617124_+	pfam17775, UPF0225, UPF0225 domain	NA|265aa|down_3|NZ_CP039204.1_2617120_2617915_-	pfam01863, DUF45, Protein of unknown function DUF45	NA|242aa|down_4|NZ_CP039204.1_2618093_2618819_-	cd14843, D-Ala-D-Ala_dipeptidase_like, D-Ala-D-Ala dipeptidase, includes uncharacterized enzymes	NA|396aa|down_5|NZ_CP039204.1_2619064_2620252_+	PRK09550, mtnK, methylthioribose kinase; Reviewed	NA|181aa|down_6|NZ_CP039204.1_2620828_2621371_-	COG1791, COG1791, Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]	NA|229aa|down_7|NZ_CP039204.1_2621367_2622054_-	cd01629, HAD_EP, Enolase-phosphatase similar to human enolase-phosphatase E1 and and Xanthomonas oryzae pv	NA|204aa|down_8|NZ_CP039204.1_2622057_2622669_-	PRK09220, PRK09220, methylthioribulose 1-phosphate dehydratase	NA|340aa|down_9|NZ_CP039204.1_2622715_2623735_-	TIGR00512, methylthioribose-1-phosphate_isomerase_predicted, S-methyl-5-thioribose-1-phosphate isomerase
GCF_009709415.1_ASM970941v1	NZ_CP039205	Piscirickettsia salmonis strain Psal-182 plasmid unnamed1, complete sequence	1	1232-1664	1	CRT	no		RT	Orphan	AAACGGAACACAAACGGAACACAA	24	0	0	NA	NA	NA	6	6	Orphan	DEDDh,RT,DinG,cas3,csa3	NA,NA|210aa|down_4|NZ_CP039205.1_5555_6185_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|340aa|up_0|NZ_CP039205.1_0_1020_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|56aa|down_0|NZ_CP039205.1_2879_3047_-	PRK05771, PRK05771, V-type ATP synthase subunit I; Validated	NA|243aa|down_1|NZ_CP039205.1_3102_3831_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|143aa|down_2|NZ_CP039205.1_4740_5169_+	pfam08780, NTase_sub_bind, Nucleotidyltransferase substrate binding protein like	NA|100aa|down_3|NZ_CP039205.1_5165_5465_+	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase	NA|210aa|down_4|NZ_CP039205.1_5555_6185_+	NA	NA|347aa|down_5|NZ_CP039205.1_6198_7239_+	pfam11740, KfrA_N, Plasmid replication region DNA-binding N-term	NA|350aa|down_6|NZ_CP039205.1_7347_8397_+	pfam13546, DDE_5, DDE superfamily endonuclease	NA|105aa|down_7|NZ_CP039205.1_8453_8768_+	PRK14900, valS, valyl-tRNA synthetase; Provisional	NA|321aa|down_8|NZ_CP039205.1_8791_9754_+	cd00799, INT_Cre_C, C-terminal catalytic domain of Cre recombinase (also called integrase)	NA|296aa|down_9|NZ_CP039205.1_10355_11242_-	pfam13358, DDE_3, DDE superfamily endonuclease
