assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009709455.1_ASM970945v1	NZ_CP039209	Piscirickettsia salmonis strain Psal-103 chromosome, complete genome	1	360336-360465	1	CRISPRCasFinder	no		DEDDh,RT,DinG,cas3,csa3	Orphan	ATAACTGTAAGGAGAAGGCATCGTTTTTCCTTATTGTATTTTTTAA	46	1	50	360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419|360382-360419	NZ_CP039213.1_30347-30310|NZ_CP039210.1_23925-23888|NZ_CP039210.1_166754-166717|NZ_CP039209.1_256088-256051|NZ_CP039209.1_337364-337327|NZ_CP039209.1_458381-458344|NZ_CP039209.1_699885-699848|NZ_CP039209.1_723866-723829|NZ_CP039209.1_781678-781641|NZ_CP039209.1_883728-883691|NZ_CP039209.1_928306-928269|NZ_CP039209.1_1358997-1358960|NZ_CP039209.1_1381084-1381047|NZ_CP039209.1_1415162-1415125|NZ_CP039209.1_1541319-1541282|NZ_CP039209.1_1571087-1571050|NZ_CP039209.1_1734748-1734711|NZ_CP039209.1_1760142-1760105|NZ_CP039209.1_1801929-1801892|NZ_CP039209.1_1943853-1943816|NZ_CP039209.1_1981893-1981856|NZ_CP039209.1_2244361-2244324|NZ_CP039209.1_2337909-2337872|NZ_CP039209.1_2707210-2707173|NZ_CP039209.1_2997469-2997432|NZ_CP039209.1_46489-46526|NZ_CP039209.1_177199-177236|NZ_CP039209.1_181871-181908|NZ_CP039209.1_225188-225225|NZ_CP039209.1_459671-459708|NZ_CP039209.1_511337-511374|NZ_CP039209.1_558897-558934|NZ_CP039209.1_675999-676036|NZ_CP039209.1_911655-911692|NZ_CP039209.1_1023157-1023194|NZ_CP039209.1_1091443-1091480|NZ_CP039209.1_1133394-1133431|NZ_CP039209.1_1739395-1739432|NZ_CP039209.1_1931928-1931965|NZ_CP039209.1_1971848-1971885|NZ_CP039209.1_2048012-2048049|NZ_CP039209.1_2062147-2062184|NZ_CP039209.1_2170708-2170745|NZ_CP039209.1_2173626-2173663|NZ_CP039209.1_2250278-2250315|NZ_CP039209.1_2341135-2341172|NZ_CP039209.1_2798844-2798881|NZ_CP039209.1_3001564-3001601|NZ_CP039209.1_3012424-3012461|NZ_CP039209.1_1135955-1135918	NA	1	1	Orphan	DEDDh,RT,DinG,cas3,csa3	NA|290aa|up_9|NZ_CP039209.1_349341_350211_-,NA|243aa|up_8|NZ_CP039209.1_350355_351084_-,NA|73aa|up_7|NZ_CP039209.1_351946_352165_-,NA|65aa|up_4|NZ_CP039209.1_355039_355234_-,NA|105aa|up_0|NZ_CP039209.1_359114_359429_-,NA|97aa|down_0|NZ_CP039209.1_361282_361573_+,NA|233aa|down_1|NZ_CP039209.1_361610_362309_+,NA|99aa|down_2|NZ_CP039209.1_362325_362622_+,NA|282aa|down_3|NZ_CP039209.1_362745_363591_+,NA|128aa|down_4|NZ_CP039209.1_363795_364179_+,NA|192aa|down_5|NZ_CP039209.1_364451_365027_+,NA|262aa|down_9|NZ_CP039209.1_368485_369271_+	NA|290aa|up_9|NZ_CP039209.1_349341_350211_-	NA	NA|243aa|up_8|NZ_CP039209.1_350355_351084_-	NA	NA|73aa|up_7|NZ_CP039209.1_351946_352165_-	NA	NA|85aa|up_6|NZ_CP039209.1_352938_353193_+	PRK08116, PRK08116, hypothetical protein; Validated	NA|329aa|up_5|NZ_CP039209.1_353915_354902_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|65aa|up_4|NZ_CP039209.1_355039_355234_-	NA	NA|354aa|up_3|NZ_CP039209.1_355916_356978_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|468aa|up_2|NZ_CP039209.1_357139_358543_+	cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like	NA|192aa|up_1|NZ_CP039209.1_358593_359169_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|105aa|up_0|NZ_CP039209.1_359114_359429_-	NA	NA|97aa|down_0|NZ_CP039209.1_361282_361573_+	NA	NA|233aa|down_1|NZ_CP039209.1_361610_362309_+	NA	NA|99aa|down_2|NZ_CP039209.1_362325_362622_+	NA	NA|282aa|down_3|NZ_CP039209.1_362745_363591_+	NA	NA|128aa|down_4|NZ_CP039209.1_363795_364179_+	NA	NA|192aa|down_5|NZ_CP039209.1_364451_365027_+	NA	NA|278aa|down_6|NZ_CP039209.1_365084_365918_-	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA|395aa|down_7|NZ_CP039209.1_366033_367218_+	COG1398, OLE1, Fatty-acid desaturase [Lipid metabolism]	NA|315aa|down_8|NZ_CP039209.1_367236_368181_-	PRK10260, PRK10260, L,D-transpeptidase; Provisional	NA|262aa|down_9|NZ_CP039209.1_368485_369271_+	NA
GCF_009709455.1_ASM970945v1	NZ_CP039209	Piscirickettsia salmonis strain Psal-103 chromosome, complete genome	2	1399867-1399973	2	CRISPRCasFinder	no		DEDDh,RT,DinG,cas3,csa3	Orphan	GCGCTTGATAATCTCCCTTTGTTTATTAAAATGCAAGA	38	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,DinG,cas3,csa3	NA|154aa|up_6|NZ_CP039209.1_1388684_1389146_+,NA|62aa|up_4|NZ_CP039209.1_1392081_1392267_+,NA|105aa|up_2|NZ_CP039209.1_1396963_1397278_-,NA|87aa|up_1|NZ_CP039209.1_1397535_1397796_+,NA|204aa|down_3|NZ_CP039209.1_1404936_1405548_+,NA|87aa|down_4|NZ_CP039209.1_1405732_1405993_+,NA|67aa|down_6|NZ_CP039209.1_1407830_1408031_-	NA|421aa|up_9|NZ_CP039209.1_1384078_1385341_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|602aa|up_8|NZ_CP039209.1_1385428_1387234_-	PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional	NA|266aa|up_7|NZ_CP039209.1_1387717_1388515_-	pfam05708, Peptidase_C92, Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family	NA|154aa|up_6|NZ_CP039209.1_1388684_1389146_+	NA	NA|652aa|up_5|NZ_CP039209.1_1389444_1391400_-	PRK11619, PRK11619, lytic murein transglycosylase; Provisional	NA|62aa|up_4|NZ_CP039209.1_1392081_1392267_+	NA	NA|330aa|up_3|NZ_CP039209.1_1392600_1393590_+	COG1054, COG1054, Predicted sulfurtransferase [General function prediction only]	NA|105aa|up_2|NZ_CP039209.1_1396963_1397278_-	NA	NA|87aa|up_1|NZ_CP039209.1_1397535_1397796_+	NA	NA|163aa|up_0|NZ_CP039209.1_1397815_1398304_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|313aa|down_0|NZ_CP039209.1_1401006_1401945_+	pfam00665, rve, Integrase core domain	NA|522aa|down_1|NZ_CP039209.1_1401970_1403536_-	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|276aa|down_2|NZ_CP039209.1_1403742_1404570_-	cd03023, DsbA_Com1_like, DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti	NA|204aa|down_3|NZ_CP039209.1_1404936_1405548_+	NA	NA|87aa|down_4|NZ_CP039209.1_1405732_1405993_+	NA	NA|141aa|down_5|NZ_CP039209.1_1406985_1407408_+	cd19924, REC_CheV-like, phosphoacceptor receiver (REC) domain of chemotaxis protein CheV and similar proteins	NA|67aa|down_6|NZ_CP039209.1_1407830_1408031_-	NA	NA|269aa|down_7|NZ_CP039209.1_1408405_1409212_+	COG3963, COG3963, Phospholipid N-methyltransferase [Lipid metabolism]	NA|324aa|down_8|NZ_CP039209.1_1409317_1410289_-	cd13643, PBP2_BCP_2, Substrate-binding domain of osmoregulatory ABC-type glycine betaine/choline/L-proline transport system-like; the type 2 periplasmic-binding protein fold	NA|324aa|down_9|NZ_CP039209.1_1410270_1411242_-	cd13643, PBP2_BCP_2, Substrate-binding domain of osmoregulatory ABC-type glycine betaine/choline/L-proline transport system-like; the type 2 periplasmic-binding protein fold
GCF_009709455.1_ASM970945v1	NZ_CP039209	Piscirickettsia salmonis strain Psal-103 chromosome, complete genome	3	2626634-2626754	3	CRISPRCasFinder	no		DEDDh,RT,DinG,cas3,csa3	Orphan	TTGATTAAGTCCAAGGGCTGCTAACCATTGATAAGCT	37	0	0	NA	NA	NA	1	1	Orphan	DEDDh,RT,DinG,cas3,csa3	NA|158aa|up_8|NZ_CP039209.1_2617971_2618445_-,NA|172aa|up_4|NZ_CP039209.1_2623832_2624348_+,NA|88aa|up_3|NZ_CP039209.1_2624580_2624844_+,NA|137aa|up_2|NZ_CP039209.1_2625112_2625523_+,NA|141aa|up_1|NZ_CP039209.1_2625766_2626189_-,NA|47aa|up_0|NZ_CP039209.1_2626221_2626362_+,NA	NA|461aa|up_9|NZ_CP039209.1_2616580_2617963_-	TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase	NA|158aa|up_8|NZ_CP039209.1_2617971_2618445_-	NA	NA|420aa|up_7|NZ_CP039209.1_2618577_2619837_+	PRK14072, PRK14072, diphosphate--fructose-6-phosphate 1-phosphotransferase	NA|694aa|up_6|NZ_CP039209.1_2620292_2622374_+	cd14016, STKc_CK1, Catalytic domain of the Serine/Threonine protein kinase, Casein Kinase 1	NA|337aa|up_5|NZ_CP039209.1_2622677_2623688_+	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|172aa|up_4|NZ_CP039209.1_2623832_2624348_+	NA	NA|88aa|up_3|NZ_CP039209.1_2624580_2624844_+	NA	NA|137aa|up_2|NZ_CP039209.1_2625112_2625523_+	NA	NA|141aa|up_1|NZ_CP039209.1_2625766_2626189_-	NA	NA|47aa|up_0|NZ_CP039209.1_2626221_2626362_+	NA	NA|155aa|down_0|NZ_CP039209.1_2628131_2628596_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|161aa|down_1|NZ_CP039209.1_2628652_2629135_-	pfam01710, HTH_Tnp_IS630, Transposase	NA|132aa|down_2|NZ_CP039209.1_2629989_2630385_+	pfam17775, UPF0225, UPF0225 domain	NA|265aa|down_3|NZ_CP039209.1_2630381_2631176_-	pfam01863, DUF45, Protein of unknown function DUF45	NA|242aa|down_4|NZ_CP039209.1_2631354_2632080_-	cd14843, D-Ala-D-Ala_dipeptidase_like, D-Ala-D-Ala dipeptidase, includes uncharacterized enzymes	NA|396aa|down_5|NZ_CP039209.1_2632325_2633513_+	PRK09550, mtnK, methylthioribose kinase; Reviewed	NA|181aa|down_6|NZ_CP039209.1_2634089_2634632_-	COG1791, COG1791, Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]	NA|229aa|down_7|NZ_CP039209.1_2634628_2635315_-	cd01629, HAD_EP, Enolase-phosphatase similar to human enolase-phosphatase E1 and and Xanthomonas oryzae pv	NA|204aa|down_8|NZ_CP039209.1_2635318_2635930_-	PRK09220, PRK09220, methylthioribulose 1-phosphate dehydratase	NA|340aa|down_9|NZ_CP039209.1_2635976_2636996_-	TIGR00512, methylthioribose-1-phosphate_isomerase_predicted, S-methyl-5-thioribose-1-phosphate isomerase
GCF_009709455.1_ASM970945v1	NZ_CP039210	Piscirickettsia salmonis strain Psal-103 plasmid unnamed1, complete sequence	1	125192-125415	1	CRT	no	RT	RT	Unclear	AAACGGAACACAAACGGAACACAAA	25	0	0	NA	NA	NA	3	3	Orphan	DEDDh,RT,DinG,cas3,csa3	NA|138aa|up_9|NZ_CP039210.1_114021_114435_-,NA|343aa|up_6|NZ_CP039210.1_117109_118138_+,NA|49aa|up_3|NZ_CP039210.1_120878_121025_+,NA|86aa|down_3|NZ_CP039210.1_130524_130782_-,NA|155aa|down_4|NZ_CP039210.1_131915_132380_+	NA|138aa|up_9|NZ_CP039210.1_114021_114435_-	NA	NA|243aa|up_8|NZ_CP039210.1_114532_115261_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|385aa|up_7|NZ_CP039210.1_115327_116481_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|343aa|up_6|NZ_CP039210.1_117109_118138_+	NA	NA|385aa|up_5|NZ_CP039210.1_118417_119571_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	RT|376aa|up_4|NZ_CP039210.1_119530_120658_-	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase	NA|49aa|up_3|NZ_CP039210.1_120878_121025_+	NA	NA|272aa|up_2|NZ_CP039210.1_121354_122170_+	pfam04986, Y2_Tnp, Putative transposase	NA|197aa|up_1|NZ_CP039210.1_122415_123006_+	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain	NA|340aa|up_0|NZ_CP039210.1_123960_124980_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|243aa|down_0|NZ_CP039210.1_125903_126632_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|859aa|down_1|NZ_CP039210.1_126835_129412_+	TIGR00601, UV_excision_repair_protein_RAD23_homolog_A, UV excision repair protein Rad23	NA|326aa|down_2|NZ_CP039210.1_129528_130506_-	pfam13737, DDE_Tnp_1_5, Transposase DDE domain	NA|86aa|down_3|NZ_CP039210.1_130524_130782_-	NA	NA|155aa|down_4|NZ_CP039210.1_131915_132380_+	NA	NA|57aa|down_5|NZ_CP039210.1_132718_132889_+	pfam14319, Zn_Tnp_IS91, Transposase zinc-binding domain	NA|243aa|down_6|NZ_CP039210.1_134559_135288_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|453aa|down_7|NZ_CP039210.1_135471_136830_-	cd18013, DEXQc_bact_SNF2, DEXQ-box helicase domain of bacterial SNF2 family proteins	NA|189aa|down_8|NZ_CP039210.1_136919_137486_-	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|229aa|down_9|NZ_CP039210.1_137489_138176_-	COG3177, COG3177, Fic family protein [Function unknown]
