The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP046257	Gordonia sp. 135 chromosome, complete genome	5039827	25464	75963	5039827	integrase,protease,transposase	Leptospira_phage(20.0%)	39	55231:55247	77586:77602
WP_035753878.1|25464_26181_+|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
WP_035753877.1|26208_26715_-	hypothetical protein	NA	NA	NA	NA	NA
WP_006361193.1|26832_27123_-	cell division protein CrgA	NA	NA	NA	NA	NA
WP_006361194.1|27283_27943_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	46.7	7.8e-44
WP_006361195.1|28016_29966_-	Stk1 family PASTA domain-containing Ser/Thr kinase	NA	A0A1B1IUU3	uncultured_Mediterranean_phage	30.2	1.4e-19
WP_035753874.1|30035_31400_-	serine/threonine protein kinase	NA	A0A0U2U263	Niemeyer_virus	24.6	2.1e-11
WP_006361197.1|31396_32896_-	penicillin-binding protein 2	NA	NA	NA	NA	NA
WP_006361198.1|32892_34326_-	FtsW/RodA/SpoVE family cell cycle protein	NA	NA	NA	NA	NA
WP_006361199.1|34322_35822_-	serine/threonine-protein phosphatase	NA	NA	NA	NA	NA
WP_005200436.1|35818_36283_-	FHA domain-containing protein	NA	NA	NA	NA	NA
WP_155224886.1|36535_37897_-	DUF3662 domain-containing protein	NA	NA	NA	NA	NA
WP_155224887.1|38488_39838_+	lipase	NA	NA	NA	NA	NA
WP_035754026.1|43755_44508_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_155225667.1|44586_45504_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_035756060.1|45508_46579_-	ferredoxin--NADP reductase	NA	Q58M74	Prochlorococcus_phage	40.9	2.5e-07
WP_006361210.1|46575_47445_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_006361211.1|47484_49008_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_006361212.1|49166_50135_-	diiron oxygenase	NA	NA	NA	NA	NA
WP_006361213.1|50268_50610_+	DUF4873 domain-containing protein	NA	NA	NA	NA	NA
WP_006357955.1|54011_55655_-	fatty acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	24.2	4.8e-18
55231:55247	attL	CCGGCGACGAACACGAC	NA	NA	NA	NA
WP_035756039.1|55682_56162_-	hypothetical protein	NA	NA	NA	NA	NA
WP_075863799.1|56418_57351_-	MCE family protein	NA	NA	NA	NA	NA
WP_035756041.1|57377_58415_-	MCE family protein	NA	NA	NA	NA	NA
WP_042378896.1|58414_59461_-	MCE family protein	NA	NA	NA	NA	NA
WP_042378899.1|59454_60450_-	MCE family protein	NA	NA	NA	NA	NA
WP_155224888.1|60446_61451_-	MCE family protein	NA	NA	NA	NA	NA
WP_040004233.1|61451_62486_-	MCE family protein	NA	NA	NA	NA	NA
WP_006359632.1|62494_63358_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_035756051.1|63368_64109_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_085950464.1|64479_65617_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	35.2	1.3e-33
WP_139319570.1|66046_66901_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_139319571.1|67465_67732_-	DUF302 domain-containing protein	NA	NA	NA	NA	NA
WP_006358896.1|67880_68600_-	hypothetical protein	NA	NA	NA	NA	NA
WP_035756068.1|68865_69282_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155224889.1|69344_70088_-	DNA replication protein	NA	U5N3V8	Enterobacteria_phage	42.9	2.4e-49
WP_006359312.1|70480_70807_+|transposase	transposase	transposase	A0A1B3AZF8	Gordonia_phage	99.0	9.5e-51
WP_085948638.1|70882_72021_-|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	35.6	3.3e-34
WP_085948641.1|72766_73931_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	30.8	1.8e-30
WP_035756103.1|74916_75963_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
77586:77602	attR	CCGGCGACGAACACGAC	NA	NA	NA	NA
>prophage 2
NZ_CP046257	Gordonia sp. 135 chromosome, complete genome	5039827	1308541	1381277	5039827	transposase,capsid,holin,portal,terminase	Staphylococcus_phage(25.0%)	58	NA	NA
WP_155225094.1|1308541_1309777_-|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
WP_155225059.1|1310292_1311593_-|transposase	IS3 family transposase	transposase	A0A1B3AZE5	Gordonia_phage	42.1	7.9e-56
WP_035750952.1|1312929_1313700_-	hypothetical protein	NA	NA	NA	NA	NA
WP_035751322.1|1313703_1314801_-	DUF3071 domain-containing protein	NA	NA	NA	NA	NA
WP_075863653.1|1315033_1316179_-	phosphoserine transaminase	NA	NA	NA	NA	NA
WP_075863654.1|1317433_1318294_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081724778.1|1320676_1321000_-	invasin	NA	NA	NA	NA	NA
WP_075863655.1|1321299_1322427_-	citrate synthase 2	NA	NA	NA	NA	NA
WP_040004464.1|1322554_1323289_+	pyridoxamine 5'-phosphate oxidase	NA	NA	NA	NA	NA
WP_035750961.1|1323378_1324647_+	MFS transporter	NA	NA	NA	NA	NA
WP_035751328.1|1324691_1325765_+	isopenicillin N synthase family oxygenase	NA	NA	NA	NA	NA
WP_006361236.1|1325868_1326990_-	DUF2236 domain-containing protein	NA	NA	NA	NA	NA
WP_006361235.1|1327035_1327305_-	DUF4235 domain-containing protein	NA	NA	NA	NA	NA
WP_006361234.1|1327328_1327586_-	DUF3618 domain-containing protein	NA	NA	NA	NA	NA
WP_035750963.1|1327586_1327982_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_035750965.1|1328053_1328926_-	biotin-dependent carboxyltransferase family protein	NA	NA	NA	NA	NA
WP_006361231.1|1328922_1329591_-	allophanate hydrolase subunit 1	NA	NA	NA	NA	NA
WP_006361230.1|1329649_1330588_+	carbohydrate kinase	NA	NA	NA	NA	NA
WP_006361229.1|1330648_1331971_+	citrate synthase	NA	NA	NA	NA	NA
WP_005198205.1|1332044_1332413_+	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA	NA
WP_035750968.1|1332427_1333714_+	deoxyribodipyrimidine photo-lyase	NA	A0A2H4UV63	Bodo_saltans_virus	29.1	3.0e-47
WP_035754856.1|1339833_1341063_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_035754854.1|1341059_1341956_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	33.0	1.8e-30
WP_035754851.1|1341952_1342573_-	hypothetical protein	NA	NA	NA	NA	NA
WP_006359706.1|1342569_1342884_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_127963907.1|1342963_1344067_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_006359708.1|1344154_1344886_+	enoyl-CoA hydratase	NA	NA	NA	NA	NA
WP_042376602.1|1345007_1346117_+	XdhC family protein	NA	NA	NA	NA	NA
WP_040004246.1|1346119_1347442_-	FAD-binding protein	NA	NA	NA	NA	NA
WP_035754846.1|1347438_1348731_-	alanine racemase	NA	NA	NA	NA	NA
WP_035754902.1|1348714_1349338_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_035754900.1|1349548_1350733_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_006359714.1|1350729_1353216_+	HAD-IC family P-type ATPase	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	23.6	3.9e-27
WP_006359715.1|1353287_1353527_+	antitoxin	NA	NA	NA	NA	NA
WP_006359716.1|1353531_1354173_-	DNA-3-methyladenine glycosylase	NA	NA	NA	NA	NA
WP_006359717.1|1354150_1354588_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_006359718.1|1354675_1356388_+	VWA domain-containing protein	NA	NA	NA	NA	NA
WP_006359719.1|1356448_1356955_+	FMN-binding protein	NA	NA	NA	NA	NA
WP_155225096.1|1356981_1357869_+	FAD:protein FMN transferase	NA	NA	NA	NA	NA
WP_006359721.1|1357865_1359461_+	oxidoreductase	NA	NA	NA	NA	NA
WP_155225098.1|1359515_1360466_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	30.0	1.3e-28
WP_035754840.1|1360462_1362115_-	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_155225099.1|1362190_1363798_+	PucR family transcriptional regulator	NA	NA	NA	NA	NA
WP_006359725.1|1363919_1366091_-	glutamine synthetase	NA	NA	NA	NA	NA
WP_006359726.1|1366282_1368220_-	gamma-glutamyltransferase family protein	NA	Q5GF27	Diachasmimorpha_longicaudata_entomopoxvirus	24.3	6.6e-06
WP_035754832.1|1368290_1369664_-	MFS transporter	NA	NA	NA	NA	NA
WP_035754830.1|1369803_1370244_+	SRPBCC family protein	NA	NA	NA	NA	NA
WP_155225100.1|1370251_1371883_-	MFS transporter	NA	NA	NA	NA	NA
WP_006359730.1|1371938_1372631_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_155225101.1|1372781_1374005_+	DUF2236 domain-containing protein	NA	NA	NA	NA	NA
WP_155225102.1|1374087_1375365_-	acyltransferase family protein	NA	NA	NA	NA	NA
WP_155225103.1|1375895_1376213_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155225104.1|1376212_1376530_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155225105.1|1376609_1377440_-|capsid	phage major capsid protein	capsid	NA	NA	NA	NA
WP_155225106.1|1377575_1377926_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155225688.1|1377946_1378306_-	hypothetical protein	NA	NA	NA	NA	NA
WP_155225107.1|1378428_1379796_-|portal	phage portal protein	portal	A0A2H5BLQ6	Streptomyces_phage	29.7	3.9e-29
WP_155225108.1|1379810_1381277_-|terminase	terminase large subunit	terminase	A0A2K9VGS4	Pontimonas_phage	34.4	1.3e-54
>prophage 3
NZ_CP046257	Gordonia sp. 135 chromosome, complete genome	5039827	2836676	2844255	5039827	integrase,transposase	Mycobacterium_phage(33.33%)	9	2830340:2830354	2848148:2848162
2830340:2830354	attL	CGGTGATTTCGGCGG	NA	NA	NA	NA
WP_155225710.1|2836676_2836835_-	excisionase family DNA-binding protein	NA	A0A2D1GJY6	Mycobacterium_phage	55.1	3.1e-07
WP_155225331.1|2837067_2837742_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096273871.1|2837853_2838144_-	helix-turn-helix domain-containing protein	NA	A0A249XU22	Mycobacterium_phage	40.0	7.0e-05
WP_155225711.1|2838440_2839208_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A2P1CI94	Actinomyces_phage	38.5	6.1e-24
WP_075863973.1|2839226_2840738_+|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	27.6	7.1e-16
WP_006361228.1|2840734_2841520_+	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	34.5	3.7e-32
WP_155225712.1|2841545_2842136_-	hypothetical protein	NA	NA	NA	NA	NA
WP_081724790.1|2842667_2843273_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155225332.1|2843355_2844255_+	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.2	3.0e-22
2848148:2848162	attR	CCGCCGAAATCACCG	NA	NA	NA	NA
>prophage 4
NZ_CP046257	Gordonia sp. 135 chromosome, complete genome	5039827	3521816	3530949	5039827		Gordonia_phage(33.33%)	7	NA	NA
WP_155225416.1|3521816_3524828_+	ATP-dependent helicase	NA	A0A2K9VEG9	Gordonia_phage	28.0	2.4e-39
WP_006359434.1|3524824_3525634_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006359435.1|3525681_3526686_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A160DHK0	Gordonia_phage	86.5	2.0e-155
WP_006359436.1|3526754_3528950_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	V9VI16	Lactococcus_phage	51.6	1.4e-209
WP_006359437.1|3529049_3529514_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	Q4Z9B0	Staphylococcus_phage	31.7	4.7e-11
WP_005198719.1|3529740_3529977_-	redoxin NrdH	NA	V5UN81	Mycobacterium_phage	62.8	5.1e-22
WP_006359438.1|3530391_3530949_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	29.8	3.4e-08
>prophage 5
NZ_CP046257	Gordonia sp. 135 chromosome, complete genome	5039827	4314216	4359950	5039827	transposase	Leptospira_phage(28.57%)	35	NA	NA
WP_006360329.1|4314216_4315605_+|transposase	IS1380-like element ISGosp1 family transposase	transposase	NA	NA	NA	NA
WP_005198135.1|4316101_4316947_+	3-hydroxybutyryl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_035754513.1|4317206_4318223_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006359792.1|4318432_4318897_+	cupin domain-containing protein	NA	NA	NA	NA	NA
WP_035754652.1|4318930_4319674_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_006359790.1|4319867_4320299_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_005198130.1|4320348_4322574_+	catalase/peroxidase HPI	NA	NA	NA	NA	NA
WP_005198129.1|4322725_4323091_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_006359788.1|4323087_4324755_+	SulP family inorganic anion transporter	NA	NA	NA	NA	NA
WP_006359787.1|4324975_4327216_+	NADP-dependent isocitrate dehydrogenase	NA	NA	NA	NA	NA
WP_040004259.1|4327291_4328023_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006359784.1|4329282_4329990_+	type 1 glutamine amidotransferase	NA	NA	NA	NA	NA
WP_006359783.1|4330044_4331118_-	ADP-ribosylglycohydrolase family protein	NA	A0A1I9SA26	Rhodococcus_phage	29.5	2.3e-16
WP_006359781.1|4332023_4332425_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006359780.1|4332424_4332790_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_006361228.1|4333074_4333860_-	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	34.5	3.7e-32
WP_155225741.1|4333856_4335575_-|transposase	IS21 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	27.1	5.4e-12
WP_006359316.1|4335878_4336169_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_155225531.1|4336162_4336969_+|transposase	IS3 family transposase	transposase	S5WIU1	Leptospira_phage	33.3	1.9e-28
WP_006359128.1|4340040_4340520_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_006359127.1|4340941_4341982_+	diiron oxygenase	NA	NA	NA	NA	NA
WP_042378911.1|4342013_4343528_+	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
WP_042378920.1|4343807_4345358_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_006359124.1|4345948_4346863_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_035754036.1|4347274_4348267_-|transposase	IS481 family transposase	transposase	E9P643	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	24.9	2.6e-06
WP_042378923.1|4348660_4348879_+	hypothetical protein	NA	NA	NA	NA	NA
WP_155225532.1|4349078_4349831_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_155225743.1|4349912_4350830_-	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_035756060.1|4350834_4351905_-	ferredoxin--NADP reductase	NA	Q58M74	Prochlorococcus_phage	40.9	2.5e-07
WP_006361210.1|4351901_4352771_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_006361211.1|4352810_4354334_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_006361212.1|4354492_4355461_-	diiron oxygenase	NA	NA	NA	NA	NA
WP_006361213.1|4355594_4355936_+	DUF4873 domain-containing protein	NA	NA	NA	NA	NA
WP_155225533.1|4356002_4359083_+	MMPL family transporter	NA	NA	NA	NA	NA
WP_155225534.1|4359350_4359950_-|transposase	transposase	transposase	S5WIU1	Leptospira_phage	33.9	1.8e-26
