assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009724905.1_ASM972490v1	NZ_CP039227	Piscirickettsia salmonis strain SR1 chromosome, complete genome	1	686736-686835	1	CRISPRCasFinder	no		DEDDh,cas3,DinG,csa3	Orphan	AATAAATATTAATTTTTTAAATT	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,DinG,csa3	NA|163aa|up_9|NZ_CP039227.1_678267_678756_-,NA|51aa|up_8|NZ_CP039227.1_679045_679198_-,NA|103aa|up_7|NZ_CP039227.1_679473_679782_+,NA|353aa|up_3|NZ_CP039227.1_683368_684427_-,NA|189aa|down_1|NZ_CP039227.1_688570_689137_+,NA|210aa|down_4|NZ_CP039227.1_691283_691913_+	NA|163aa|up_9|NZ_CP039227.1_678267_678756_-	NA	NA|51aa|up_8|NZ_CP039227.1_679045_679198_-	NA	NA|103aa|up_7|NZ_CP039227.1_679473_679782_+	NA	NA|117aa|up_6|NZ_CP039227.1_679778_680129_+	pfam05717, TnpB_IS66, IS66 Orf2 like protein	NA|466aa|up_5|NZ_CP039227.1_680171_681569_+	pfam03050, DDE_Tnp_IS66, Transposase IS66 family	NA|218aa|up_4|NZ_CP039227.1_681932_682586_-	pfam13546, DDE_5, DDE superfamily endonuclease	NA|353aa|up_3|NZ_CP039227.1_683368_684427_-	NA	NA|130aa|up_2|NZ_CP039227.1_684705_685095_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|129aa|up_1|NZ_CP039227.1_685091_685478_+	COG3415, COG3415, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|186aa|up_0|NZ_CP039227.1_685461_686019_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|264aa|down_0|NZ_CP039227.1_687238_688030_-	pfam13649, Methyltransf_25, Methyltransferase domain	NA|189aa|down_1|NZ_CP039227.1_688570_689137_+	NA	NA|325aa|down_2|NZ_CP039227.1_689805_690780_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|133aa|down_3|NZ_CP039227.1_690839_691238_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|210aa|down_4|NZ_CP039227.1_691283_691913_+	NA	NA|547aa|down_5|NZ_CP039227.1_692279_693920_-	PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed	NA|450aa|down_6|NZ_CP039227.1_694032_695382_+	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|290aa|down_7|NZ_CP039227.1_695378_696248_+	COG1210, GalU, UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]	NA|105aa|down_8|NZ_CP039227.1_696994_697309_+	pfam01710, HTH_Tnp_IS630, Transposase	NA|236aa|down_9|NZ_CP039227.1_697305_698013_-	pfam13683, rve_3, Integrase core domain
GCF_009724905.1_ASM972490v1	NZ_CP039227	Piscirickettsia salmonis strain SR1 chromosome, complete genome	2	1059920-1060031	2	CRISPRCasFinder	no		DEDDh,cas3,DinG,csa3	Orphan	TCATGAAGTATTAATAATGCTTTTGTTAGGT	31	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,DinG,csa3	NA|283aa|up_9|NZ_CP039227.1_1045689_1046538_+,NA|547aa|up_5|NZ_CP039227.1_1052991_1054632_-,NA	NA|283aa|up_9|NZ_CP039227.1_1045689_1046538_+	NA	NA|897aa|up_8|NZ_CP039227.1_1046829_1049520_+	cd04792, LanM-like, Cyclases involved in the biosynthesis of class II lantibiotics, and similar proteins	NA|388aa|up_7|NZ_CP039227.1_1049766_1050930_+	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|394aa|up_6|NZ_CP039227.1_1051660_1052842_-	pfam13546, DDE_5, DDE superfamily endonuclease	NA|547aa|up_5|NZ_CP039227.1_1052991_1054632_-	NA	NA|409aa|up_4|NZ_CP039227.1_1055220_1056447_+	PRK11010, ampG, muropeptide MFS transporter AmpG	NA|325aa|up_3|NZ_CP039227.1_1056644_1057619_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|122aa|up_2|NZ_CP039227.1_1057831_1058197_+	pfam13384, HTH_23, Homeodomain-like domain	NA|72aa|up_1|NZ_CP039227.1_1058253_1058469_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|180aa|up_0|NZ_CP039227.1_1058821_1059361_-	COG2032, SodC, Cu/Zn superoxide dismutase [Inorganic ion transport and metabolism]	NA|129aa|down_0|NZ_CP039227.1_1061327_1061714_+	COG3415, COG3415, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|173aa|down_1|NZ_CP039227.1_1061697_1062216_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|170aa|down_2|NZ_CP039227.1_1063007_1063517_-	pfam04986, Y2_Tnp, Putative transposase	NA|325aa|down_3|NZ_CP039227.1_1064193_1065168_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|138aa|down_4|NZ_CP039227.1_1066432_1066846_+	cd04762, HTH_MerR-trunc, Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins	NA|325aa|down_5|NZ_CP039227.1_1067463_1068438_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|156aa|down_6|NZ_CP039227.1_1068624_1069092_+	cd14663, STKc_SnRK3, Catalytic domain of the Serine/Threonine Kinases, Sucrose nonfermenting 1-related protein kinase subfamily 3	NA|296aa|down_7|NZ_CP039227.1_1069153_1070040_+	pfam13358, DDE_3, DDE superfamily endonuclease	NA|437aa|down_8|NZ_CP039227.1_1070036_1071347_+	cd00180, PKc, Catalytic domain of Protein Kinases	NA|243aa|down_9|NZ_CP039227.1_1071349_1072078_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_009724905.1_ASM972490v1	NZ_CP039227	Piscirickettsia salmonis strain SR1 chromosome, complete genome	3	1435263-1435495	3	CRISPRCasFinder	no		DEDDh,cas3,DinG,csa3	Orphan	TTGAGGATTCTGCTTCTCAAGGTTCT	26	0	0	NA	NA	NA	4	4	Orphan	DEDDh,cas3,DinG,csa3	NA|265aa|up_9|NZ_CP039227.1_1424300_1425095_+,NA|112aa|up_5|NZ_CP039227.1_1429964_1430300_+,NA|137aa|up_4|NZ_CP039227.1_1430306_1430717_+,NA|207aa|up_2|NZ_CP039227.1_1431639_1432260_-,NA|78aa|up_1|NZ_CP039227.1_1432460_1432694_+,NA|580aa|up_0|NZ_CP039227.1_1433247_1434987_+,NA|138aa|down_6|NZ_CP039227.1_1445581_1445995_+,NA|91aa|down_7|NZ_CP039227.1_1445952_1446225_+,NA|227aa|down_8|NZ_CP039227.1_1447358_1448039_+,NA|294aa|down_9|NZ_CP039227.1_1448281_1449163_+	NA|265aa|up_9|NZ_CP039227.1_1424300_1425095_+	NA	NA|1038aa|up_8|NZ_CP039227.1_1425124_1428238_+	TIGR04346, DotA_TraY, conjugal transfer/type IV secretion protein DotA/TraY	NA|278aa|up_7|NZ_CP039227.1_1428274_1429108_+	PRK03427, PRK03427, cell division protein ZipA; Provisional	NA|207aa|up_6|NZ_CP039227.1_1429343_1429964_+	pfam11393, T4BSS_DotI_IcmL, Type-IV b secretion system, inner-membrane complex component	NA|112aa|up_5|NZ_CP039227.1_1429964_1430300_+	NA	NA|137aa|up_4|NZ_CP039227.1_1430306_1430717_+	NA	NA|322aa|up_3|NZ_CP039227.1_1430707_1431673_+	pfam14378, PAP2_3, PAP2 superfamily	NA|207aa|up_2|NZ_CP039227.1_1431639_1432260_-	NA	NA|78aa|up_1|NZ_CP039227.1_1432460_1432694_+	NA	NA|580aa|up_0|NZ_CP039227.1_1433247_1434987_+	NA	NA|424aa|down_0|NZ_CP039227.1_1438257_1439529_+	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|246aa|down_1|NZ_CP039227.1_1439553_1440291_+	PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional	NA|381aa|down_2|NZ_CP039227.1_1440543_1441686_-	TIGR00203, ubiquinol_oxidase_subunit_2, cytochrome d oxidase, subunit II (cydB)	NA|534aa|down_3|NZ_CP039227.1_1441702_1443304_-	PRK15097, PRK15097, cytochrome bd-I ubiquinol oxidase subunit CydA	NA|59aa|down_4|NZ_CP039227.1_1443774_1443951_+	PRK01747, mnmC, bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA|426aa|down_5|NZ_CP039227.1_1443947_1445225_+	PRK01747, mnmC, bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA|138aa|down_6|NZ_CP039227.1_1445581_1445995_+	NA	NA|91aa|down_7|NZ_CP039227.1_1445952_1446225_+	NA	NA|227aa|down_8|NZ_CP039227.1_1447358_1448039_+	NA	NA|294aa|down_9|NZ_CP039227.1_1448281_1449163_+	NA
