assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009728895.1_ASM972889v1	NZ_CP033387	Salmonella enterica subsp. enterica strain CFSA1007 chromosome, complete genome	1	588233-588333	1	CRISPRCasFinder	no		cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Orphan	GCTTCAGTGGCGAGCGTCGTGAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA|177aa|down_1|NZ_CP033387.1_589851_590382_-	NA|448aa|up_9|NZ_CP033387.1_574310_575654_-	PRK05370, PRK05370, argininosuccinate synthase; Validated	NA|151aa|up_8|NZ_CP033387.1_576281_576734_+	PRK00092, PRK00092, ribosome maturation protein RimP; Reviewed	NA|501aa|up_7|NZ_CP033387.1_576761_578264_+	PRK09202, nusA, transcription elongation factor NusA; Validated	NA|893aa|up_6|NZ_CP033387.1_578288_580967_+	PRK05306, infB, translation initiation factor IF-2; Validated	NA|134aa|up_5|NZ_CP033387.1_581188_581590_+	PRK00521, rbfA, 30S ribosome-binding factor RbfA	NA|315aa|up_4|NZ_CP033387.1_581589_582534_+	PRK05033, truB, tRNA pseudouridine synthase B; Provisional	NA|90aa|up_3|NZ_CP033387.1_582684_582954_+	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed	NA|712aa|up_2|NZ_CP033387.1_583195_585331_+	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional	NA|295aa|up_1|NZ_CP033387.1_585440_586325_+	PRK11189, PRK11189, lipoprotein NlpI; Provisional	NA|27aa|up_0|NZ_CP033387.1_586430_586511_+	NF033440, small_YrbN, protein YrbN	NA|415aa|down_0|NZ_CP033387.1_588546_589791_+	PRK10483, PRK10483, tryptophan permease; Provisional	NA|177aa|down_1|NZ_CP033387.1_589851_590382_-	NA	NA|240aa|down_2|NZ_CP033387.1_590540_591260_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|336aa|down_3|NZ_CP033387.1_591237_592245_-	PRK10508, PRK10508, luciferase-like monooxygenase	NA|299aa|down_4|NZ_CP033387.1_592422_593319_-	PRK15447, PRK15447, putative protease; Provisional	NA|332aa|down_5|NZ_CP033387.1_593309_594305_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|down_6|NZ_CP033387.1_594521_595046_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|down_7|NZ_CP033387.1_595039_595543_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|106aa|down_8|NZ_CP033387.1_595529_595847_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|148aa|down_9|NZ_CP033387.1_595884_596328_+	PRK03467, PRK03467, hypothetical protein; Provisional
GCF_009728895.1_ASM972889v1	NZ_CP033387	Salmonella enterica subsp. enterica strain CFSA1007 chromosome, complete genome	2	933655-934721	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	28,29,29	0	0	NA	NA	I-E:I-E:I-E	16,17,17	17	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA	NA|179aa|up_9|NZ_CP033387.1_922198_922735_-	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|157aa|up_8|NZ_CP033387.1_922731_923202_-	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|169aa|up_7|NZ_CP033387.1_923216_923723_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|258aa|up_6|NZ_CP033387.1_923742_924516_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|900aa|up_5|NZ_CP033387.1_924528_927228_-	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|196aa|up_4|NZ_CP033387.1_927307_927895_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_3|NZ_CP033387.1_928504_929305_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP033387.1_929532_931170_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP033387.1_931252_932551_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP033387.1_932686_933358_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|NZ_CP033387.1_934818_935616_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|NZ_CP033387.1_935703_936066_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP033387.1_936489_938289_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP033387.1_938288_940001_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP033387.1_940076_940811_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|NZ_CP033387.1_940898_941852_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|down_6|NZ_CP033387.1_942232_944932_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|down_7|NZ_CP033387.1_945289_946825_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|down_8|NZ_CP033387.1_946841_947444_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|355aa|down_9|NZ_CP033387.1_947460_948525_+	pfam09344, Cas_CT1975, CT1975-like protein
GCF_009728895.1_ASM972889v1	NZ_CP033387	Salmonella enterica subsp. enterica strain CFSA1007 chromosome, complete genome	3	951262-952327	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	17,17,17	17	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA	NA|245aa|up_9|NZ_CP033387.1_940076_940811_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|NZ_CP033387.1_940898_941852_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|up_7|NZ_CP033387.1_942232_944932_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|up_6|NZ_CP033387.1_945289_946825_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|up_5|NZ_CP033387.1_946841_947444_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|355aa|up_4|NZ_CP033387.1_947460_948525_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|up_3|NZ_CP033387.1_948534_949260_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|235aa|up_2|NZ_CP033387.1_949259_949964_+	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|306aa|up_1|NZ_CP033387.1_949963_950881_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP033387.1_950883_951177_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_CP033387.1_952341_953388_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP033387.1_953638_954547_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP033387.1_954556_955996_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP033387.1_955982_956588_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|NZ_CP033387.1_956605_956962_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP033387.1_957152_957464_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP033387.1_957482_958193_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP033387.1_958192_958672_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP033387.1_958668_959718_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP033387.1_959698_960460_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_009728895.1_ASM972889v1	NZ_CP033386	Salmonella enterica subsp. enterica strain CFSA1007 plasmid pCFSA1007-2, complete sequence	1	34678-34797	1	CRISPRCasFinder	no			Orphan	TGCGTACCCATCCACCTTTCAGTGCGTACCCATCCACCTTTCA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA|60aa|up_8|NZ_CP033386.1_27620_27800_+,NA|118aa|up_3|NZ_CP033386.1_31782_32136_-,NA|149aa|up_2|NZ_CP033386.1_32272_32719_-,NA|63aa|down_3|NZ_CP033386.1_37887_38076_-	NA|235aa|up_9|NZ_CP033386.1_25344_26049_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|60aa|up_8|NZ_CP033386.1_27620_27800_+	NA	NA|215aa|up_7|NZ_CP033386.1_27915_28560_-	cd03767, SR_Res_par, Serine recombinase (SR) family, Partitioning (par)-Resolvase subfamily, catalytic domain; Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme	NA|207aa|up_6|NZ_CP033386.1_28854_29475_+	cd02042, ParAB_family, partition proteins ParAB family	NA|77aa|up_5|NZ_CP033386.1_29526_29757_+	pfam09274, ParG, ParG	NA|355aa|up_4|NZ_CP033386.1_30180_31245_+	pfam13614, AAA_31, AAA domain	NA|118aa|up_3|NZ_CP033386.1_31782_32136_-	NA	NA|149aa|up_2|NZ_CP033386.1_32272_32719_-	NA	NA|281aa|up_1|NZ_CP033386.1_32722_33565_-	pfam01051, Rep_3, Initiator Replication protein	NA|280aa|up_0|NZ_CP033386.1_33585_34425_-	pfam01051, Rep_3, Initiator Replication protein	NA|84aa|down_0|NZ_CP033386.1_35659_35911_+	PRK02854, PRK02854, primosomal protein DnaT	NA|94aa|down_1|NZ_CP033386.1_35900_36182_+	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning]	NA|400aa|down_2|NZ_CP033386.1_36678_37878_-	pfam04986, Y2_Tnp, Putative transposase	NA|63aa|down_3|NZ_CP033386.1_37887_38076_-	NA	NA|265aa|down_4|NZ_CP033386.1_39654_40449_+	cd05150, APH, Aminoglycoside 3'-phosphotransferase	NA|235aa|down_5|NZ_CP033386.1_40755_41460_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|195aa|down_6|NZ_CP033386.1_41866_42451_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|413aa|down_7|NZ_CP033386.1_42450_43689_-	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters	NA|302aa|down_8|NZ_CP033386.1_43685_44591_-	cd05152, MPH2', Macrolide 2'-Phosphotransferase	NA|235aa|down_9|NZ_CP033386.1_44712_45417_-	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
