assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009729915.1_ASM972991v1	NZ_CP046278	Salmonella enterica strain FDAARGOS_708 chromosome, complete genome	1	365359-366486	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT,PD-DExK	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	17,18,18	18	TypeI-E	WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT,PD-DExK	NA,NA	NA|447aa|up_9|NZ_CP046278.1_349736_351077_+	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|381aa|up_8|NZ_CP046278.1_351154_352297_+	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]	NA|919aa|up_7|NZ_CP046278.1_352340_355097_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_6|NZ_CP046278.1_355154_356450_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_5|NZ_CP046278.1_356501_358736_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|119aa|up_4|NZ_CP046278.1_358820_359177_+	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|267aa|up_3|NZ_CP046278.1_360208_361009_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP046278.1_361236_362874_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP046278.1_362956_364255_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP046278.1_364390_365062_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|121aa|down_0|NZ_CP046278.1_367475_367838_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_1|NZ_CP046278.1_368273_370073_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_2|NZ_CP046278.1_370072_371785_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_3|NZ_CP046278.1_371860_372595_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_4|NZ_CP046278.1_372682_373636_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|down_5|NZ_CP046278.1_374019_376719_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|down_6|NZ_CP046278.1_377075_378611_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|down_7|NZ_CP046278.1_378627_379230_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|355aa|down_8|NZ_CP046278.1_379246_380311_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|down_9|NZ_CP046278.1_380320_381046_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5
GCF_009729915.1_ASM972991v1	NZ_CP046278	Salmonella enterica strain FDAARGOS_708 chromosome, complete genome	2	383048-386862	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT,PD-DExK	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	21,62,62	62	TypeI-E	WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT,PD-DExK	NA,NA	NA|245aa|up_9|NZ_CP046278.1_371860_372595_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|NZ_CP046278.1_372682_373636_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|900aa|up_7|NZ_CP046278.1_374019_376719_-	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|512aa|up_6|NZ_CP046278.1_377075_378611_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|201aa|up_5|NZ_CP046278.1_378627_379230_+	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2	cas7|355aa|up_4|NZ_CP046278.1_379246_380311_+	pfam09344, Cas_CT1975, CT1975-like protein	cas5|242aa|up_3|NZ_CP046278.1_380320_381046_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|235aa|up_2|NZ_CP046278.1_381045_381750_+	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e	cas1|306aa|up_1|NZ_CP046278.1_381749_382667_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP046278.1_382669_382963_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_CP046278.1_386873_387920_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP046278.1_388170_389079_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP046278.1_389088_390528_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP046278.1_390514_391120_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|NZ_CP046278.1_391137_391494_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP046278.1_391684_391996_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP046278.1_392014_392725_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP046278.1_392724_393204_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP046278.1_393200_394250_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP046278.1_394230_394992_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_009729915.1_ASM972991v1	NZ_CP046278	Salmonella enterica strain FDAARGOS_708 chromosome, complete genome	3	2889181-2889269	3	CRISPRCasFinder	no		WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT,PD-DExK	Orphan	ATCGTTGGACATCCGTTGGACAA	23	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT,PD-DExK	NA|60aa|up_7|NZ_CP046278.1_2885045_2885225_-,NA|80aa|down_4|NZ_CP046278.1_2891284_2891524_+,NA|82aa|down_5|NZ_CP046278.1_2891614_2891860_+,NA|111aa|down_7|NZ_CP046278.1_2892471_2892804_+,NA|99aa|down_9|NZ_CP046278.1_2893476_2893773_+	NA|113aa|up_9|NZ_CP046278.1_2883662_2884001_-	pfam13392, HNH_3, HNH endonuclease	NA|208aa|up_8|NZ_CP046278.1_2884425_2885049_-	pfam03589, Antiterm, Antitermination protein	NA|60aa|up_7|NZ_CP046278.1_2885045_2885225_-	NA	NA|68aa|up_6|NZ_CP046278.1_2885205_2885409_-	pfam06322, Phage_NinH, Phage NinH protein	NA|204aa|up_5|NZ_CP046278.1_2885405_2886017_-	pfam05766, NinG, Bacteriophage Lambda NinG protein	NA|59aa|up_4|NZ_CP046278.1_2886009_2886186_-	pfam05810, NinF, NinF protein	NA|114aa|up_3|NZ_CP046278.1_2886178_2886520_-	PHA01519, PHA01519, hypothetical protein	NA|59aa|up_2|NZ_CP046278.1_2886522_2886699_-	pfam05322, NinE, NINE Protein	NA|146aa|up_1|NZ_CP046278.1_2886835_2887273_-	pfam05772, NinB, NinB protein	NA|479aa|up_0|NZ_CP046278.1_2887349_2888786_-	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily	NA|49aa|down_0|NZ_CP046278.1_2889667_2889814_-	pfam10872, DUF2740, Protein of unknown function (DUF2740)	NA|94aa|down_1|NZ_CP046278.1_2889848_2890130_-	pfam05269, Phage_CII, Bacteriophage CII protein	NA|72aa|down_2|NZ_CP046278.1_2890240_2890456_-	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|230aa|down_3|NZ_CP046278.1_2890566_2891256_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|80aa|down_4|NZ_CP046278.1_2891284_2891524_+	NA	NA|82aa|down_5|NZ_CP046278.1_2891614_2891860_+	NA	NA|70aa|down_6|NZ_CP046278.1_2891898_2892108_-	PRK10292, PRK10292, fumarate hydratase FumD	NA|111aa|down_7|NZ_CP046278.1_2892471_2892804_+	NA	NA|208aa|down_8|NZ_CP046278.1_2892815_2893439_+	pfam18757, Nmad5, Nucleotide modification associated domain 5	NA|99aa|down_9|NZ_CP046278.1_2893476_2893773_+	NA
GCF_009729915.1_ASM972991v1	NZ_CP046278	Salmonella enterica strain FDAARGOS_708 chromosome, complete genome	4	4617461-4617539	4	CRISPRCasFinder	no		WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT,PD-DExK	Orphan	TTGATATTAGCCTGGTGGTAATG	23	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG,RT,PD-DExK	NA|70aa|up_8|NZ_CP046278.1_4606027_4606237_+,NA	NA|121aa|up_9|NZ_CP046278.1_4605374_4605737_-	PRK11020, PRK11020, YibL family ribosome-associated protein	NA|70aa|up_8|NZ_CP046278.1_4606027_4606237_+	NA	NA|197aa|up_7|NZ_CP046278.1_4606246_4606837_-	PRK11001, mtlR, MltR family transcriptional regulator	NA|383aa|up_6|NZ_CP046278.1_4606833_4607982_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|639aa|up_5|NZ_CP046278.1_4608202_4610119_-	PRK15083, PRK15083, PTS system mannitol-specific transporter subunit IICBA; Provisional	NA|203aa|up_4|NZ_CP046278.1_4610594_4611203_+	PRK10357, PRK10357, putative glutathione S-transferase; Provisional	NA|464aa|up_3|NZ_CP046278.1_4611301_4612693_+	PRK04311, PRK04311, selenocysteine synthase; Provisional	NA|617aa|up_2|NZ_CP046278.1_4612689_4614540_+	PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation factor; Provisional	NA|294aa|up_1|NZ_CP046278.1_4614824_4615706_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|513aa|up_0|NZ_CP046278.1_4615874_4617413_+	cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like	NA|652aa|down_0|NZ_CP046278.1_4617642_4619598_-	COG3533, COG3533, Uncharacterized protein conserved in bacteria [Function unknown]	NA|272aa|down_1|NZ_CP046278.1_4619861_4620677_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|232aa|down_2|NZ_CP046278.1_4620825_4621521_-	PRK12347, sgbE, L-ribulose-5-phosphate 4-epimerase; Reviewed	NA|287aa|down_3|NZ_CP046278.1_4621514_4622375_-	PRK13210, PRK13210, L-ribulose-5-phosphate 3-epimerase	NA|217aa|down_4|NZ_CP046278.1_4622379_4623030_-	PRK13305, sgbH, 3-keto-L-gulonate-6-phosphate decarboxylase UlaD	NA|499aa|down_5|NZ_CP046278.1_4623026_4624523_-	cd07802, FGGY_L-XK, L-xylulose kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|329aa|down_6|NZ_CP046278.1_4624526_4625513_-	cd13679, PBP2_TRAP_YiaO_like, Substrate-binding domain of 2,3-diketo-L-gulonate-binding Tripartite ATP-independent  Periplasmic transport system and related proteins; the type 2 periplasmic-binding protein fold	NA|426aa|down_7|NZ_CP046278.1_4625524_4626802_-	PRK15060, PRK15060, 2,3-diketo-L-gulonate transporter large permease YiaN	NA|158aa|down_8|NZ_CP046278.1_4626804_4627278_-	PRK09877, PRK09877, 2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM; Provisional	NA|311aa|down_9|NZ_CP046278.1_4627416_4628349_-	pfam16154, DUF4862, Domain of unknown function (DUF4862)
