The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP046280	Salmonella enterica strain FDAARGOS_688 chromosome, complete genome	4575198	950918	965826	4575198	integrase,head,capsid,terminase,tail,portal	Cronobacter_phage(86.67%)	20	950828:950844	967448:967464
950828:950844	attL	GGCAACAAAAAACCCAC	NA	NA	NA	NA
WP_000290959.1|950918_951971_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A218M4I3	Erwinia_phage	55.8	1.7e-104
WP_000608639.1|952066_952747_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000348280.1|952743_953772_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000108288.1|953787_954381_-	phage repressor protein CI	NA	F1BUN8	Cronobacter_phage	35.5	1.3e-29
WP_000804006.1|954473_954695_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000460878.1|954727_955231_+	hypothetical protein	NA	F1BUN6	Cronobacter_phage	72.5	3.5e-60
WP_000643375.1|955240_955468_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000996838.1|955457_955883_+	hypothetical protein	NA	F1BUN5	Cronobacter_phage	50.4	7.6e-24
WP_000022786.1|955882_956284_+	hypothetical protein	NA	F1BUN2	Cronobacter_phage	66.9	1.4e-48
WP_000057334.1|956351_956582_+	DUF2732 family protein	NA	NA	NA	NA	NA
WP_156016738.1|956572_957433_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA	F1BUN1	Cronobacter_phage	82.3	1.2e-129
WP_156016740.1|957429_959451_+	replication endonuclease	NA	F1BUM9	Cronobacter_phage	74.8	2.5e-298
WP_023199746.1|959564_959783_+	hypothetical protein	NA	E5G6M0	Salmonella_phage	49.1	2.8e-06
WP_001552031.1|959756_960080_-	ogr/Delta-like zinc finger family protein	NA	F1BUM8	Cronobacter_phage	92.3	8.0e-50
WP_000038208.1|960076_961138_-|portal	phage portal protein	portal	F1BUM7	Cronobacter_phage	77.1	2.3e-162
WP_156017627.1|962181_962985_+|capsid	phage capsid protein	capsid	F1BUM4	Cronobacter_phage	56.4	7.0e-79
WP_000550496.1|963046_964069_+|capsid	phage major capsid protein, P2 family	capsid	F1BUM2	Cronobacter_phage	81.2	1.1e-158
WP_001218537.1|964072_964774_+|terminase	terminase	terminase	F1BUM0	Cronobacter_phage	66.8	9.4e-88
WP_000447487.1|964834_965323_+|head	head completion/stabilization protein	head	F1BUL8	Cronobacter_phage	82.7	2.3e-64
WP_156016742.1|965319_965826_+|tail	phage tail protein	tail	F1BUL7	Cronobacter_phage	69.1	8.9e-64
967448:967464	attR	GGCAACAAAAAACCCAC	NA	NA	NA	NA
>prophage 2
NZ_CP046280	Salmonella enterica strain FDAARGOS_688 chromosome, complete genome	4575198	1000783	1008731	4575198	transposase,protease	Dickeya_phage(16.67%)	6	NA	NA
WP_088523871.1|1000783_1001902_+	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.4e-08
WP_023232933.1|1001898_1003845_+	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	42.3	9.1e-40
WP_000447499.1|1003974_1004196_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
WP_000520789.1|1004519_1004840_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
WP_000934064.1|1004870_1007147_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	6.2e-165
WP_094915213.1|1007475_1008731_-|transposase	IS3-like element ISSen1 family transposase	transposase	Q6H9S3	Enterobacteria_phage	34.5	2.2e-18
>prophage 3
NZ_CP046280	Salmonella enterica strain FDAARGOS_688 chromosome, complete genome	4575198	1267193	1289290	4575198	tail,protease,lysis,holin,integrase	Salmonella_phage(60.0%)	31	1268482:1268497	1295410:1295425
WP_000444509.1|1267193_1268444_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	92.6	6.7e-20
1268482:1268497	attL	GTTCCCGTTTTTATTA	NA	NA	NA	NA
WP_000741325.1|1268557_1269700_-|integrase	tyrosine-type recombinase/integrase	integrase	O21929	Phage_21	80.3	8.2e-174
WP_000089141.1|1269689_1269926_-	excisionase	NA	NA	NA	NA	NA
WP_094883067.1|1270409_1271090_-	YqaJ viral recombinase family protein	NA	A0A0M3ULE0	Salmonella_phage	97.8	2.5e-130
WP_001652508.1|1271086_1271872_-	phage recombination protein Bet	NA	A0A0M4RD39	Salmonella_phage	98.9	8.2e-149
WP_079820536.1|1271877_1272174_-	host-nuclease inhibitor protein Gam	NA	A0A0M5M5Z9	Salmonella_phage	92.9	6.0e-44
WP_000186242.1|1272264_1272465_-	cell division protein FtsZ	NA	G8C7T2	Escherichia_phage	48.4	2.4e-12
WP_000373339.1|1272751_1272958_+	hypothetical protein	NA	K7P7I0	Enterobacteria_phage	67.6	2.1e-16
WP_000846936.1|1272997_1273804_-	DUF3037 domain-containing protein	NA	NA	NA	NA	NA
WP_000097141.1|1273800_1274649_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001230958.1|1274820_1275216_-	helix-turn-helix domain-containing protein	NA	K7PM35	Enterobacteria_phage	72.5	2.7e-47
WP_000992433.1|1275320_1275557_+	hypothetical protein	NA	A0A0M4QX15	Salmonella_phage	71.8	1.5e-26
WP_072208512.1|1275522_1275897_+	hypothetical protein	NA	S4TTD7	Salmonella_phage	96.8	1.2e-62
WP_156016783.1|1276089_1277007_+	replication protein	NA	A5VW95	Enterobacteria_phage	81.3	5.2e-54
WP_001537422.1|1277003_1277699_+	replication protein 14	NA	G8C7U6	Escherichia_phage	47.4	5.3e-59
WP_000273939.1|1278515_1278776_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001217669.1|1279059_1279293_+	DinI family protein	NA	H6WRY5	Salmonella_phage	100.0	5.6e-37
WP_014343878.1|1279409_1279658_+	hypothetical protein	NA	A0A0U2C0C8	Salmonella_phage	100.0	1.6e-42
WP_001750112.1|1279692_1280295_+	DUF1367 family protein	NA	S4TTI0	Salmonella_phage	99.0	2.8e-109
WP_001096500.1|1280503_1281115_+	ninG protein	NA	A0A0M4RU10	Salmonella_phage	97.5	7.9e-91
WP_000801757.1|1281111_1281252_+	YlcG family protein	NA	A0A0M5M7B2	Salmonella_phage	78.9	7.2e-08
WP_156016785.1|1281248_1281926_+	antiterminator	NA	I6PDF8	Cronobacter_phage	53.1	3.3e-61
WP_000211410.1|1282198_1282762_+	ORF6N domain-containing protein	NA	A0A0P0ZC44	Stx2-converting_phage	92.2	7.6e-56
WP_060629033.1|1283268_1283457_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001110787.1|1283671_1284358_-|protease	type III secretion system effector protease GogA	protease	Q9MBM2	Phage_Gifsy-1	99.6	3.6e-132
WP_001574216.1|1284633_1284963_+|holin	phage holin, lambda family	holin	A0A0M3ULK9	Salmonella_phage	100.0	5.8e-56
WP_000984587.1|1284946_1285399_+	lysozyme	NA	A0A0M4R365	Salmonella_phage	98.0	5.1e-79
WP_077915163.1|1285416_1285863_+|lysis	lysis protein	lysis	A0A0M4RD57	Salmonella_phage	93.9	5.3e-68
WP_000669693.1|1286098_1286500_-	hypothetical protein	NA	NA	NA	NA	NA
WP_072208476.1|1287311_1288706_+	shikimate transporter	NA	E5G6P0	Salmonella_phage	48.9	1.0e-77
WP_000143179.1|1288705_1289290_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	84.8	1.7e-87
1295410:1295425	attR	GTTCCCGTTTTTATTA	NA	NA	NA	NA
>prophage 4
NZ_CP046280	Salmonella enterica strain FDAARGOS_688 chromosome, complete genome	4575198	1935898	1941379	4575198	tail	Salmonella_phage(57.14%)	9	NA	NA
WP_000143159.1|1935898_1936483_-|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	80.6	5.8e-83
WP_001529204.1|1936472_1936793_-	hypothetical protein	NA	A0A0M4QWS3	Salmonella_phage	79.2	2.9e-44
WP_156016920.1|1936764_1938102_-	shikimate transporter	NA	E5G6P0	Salmonella_phage	51.0	2.7e-75
WP_094888543.1|1938654_1939146_-	DUF1441 family protein	NA	Q9EYD0	Enterobacteria_phage	55.6	3.5e-41
WP_001532317.1|1939200_1939389_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000789530.1|1939453_1939621_+	lytic enzyme	NA	NA	NA	NA	NA
WP_001529209.1|1939877_1940411_-	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	42.4	1.6e-10
WP_001014089.1|1940407_1940695_-	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	95.1	1.9e-39
WP_156017637.1|1940884_1941379_+	RecE	NA	A0A0U2I1R6	Escherichia_phage	67.6	7.0e-21
>prophage 5
NZ_CP046280	Salmonella enterica strain FDAARGOS_688 chromosome, complete genome	4575198	2047302	2054536	4575198		Morganella_phage(33.33%)	8	NA	NA
WP_023137091.1|2047302_2048733_-	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.4	1.0e-104
WP_000377042.1|2048806_2049502_-	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	27.1	2.8e-07
WP_000107432.1|2049593_2049893_-	hypothetical protein	NA	NA	NA	NA	NA
WP_156016944.1|2050542_2051721_+	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	57.0	4.3e-109
WP_024131163.1|2051979_2052168_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000208509.1|2052178_2052391_-	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
WP_000457656.1|2052845_2054114_-	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	92.4	4.9e-228
WP_000394197.1|2054116_2054536_-	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	60.5	8.5e-36
>prophage 6
NZ_CP046280	Salmonella enterica strain FDAARGOS_688 chromosome, complete genome	4575198	2162731	2172636	4575198		Enterobacteria_phage(25.0%)	10	NA	NA
WP_156016969.1|2162731_2163835_-	aminotransferase class V-fold PLP-dependent enzyme	NA	E5ES42	Bathycoccus_sp._RCC1105_virus	32.8	3.2e-42
WP_156017640.1|2163864_2164263_-	WxcM-like domain-containing protein	NA	NA	NA	NA	NA
WP_156016971.1|2164258_2164810_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	H9NC63	Sphingomonas_phage	39.8	4.7e-26
WP_156016973.1|2164840_2165656_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_156016976.1|2165684_2166557_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	64.5	2.5e-106
WP_156016977.1|2166604_2167504_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.0	8.8e-30
WP_156016979.1|2167503_2168589_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.1	1.8e-101
WP_156016981.1|2168965_2169859_-	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_001606097.1|2170085_2171081_-	NAD-dependent epimerase/dehydratase family protein	NA	A0A1V0QG29	Shearwaterpox_virus	25.6	1.5e-09
WP_156016983.1|2171232_2172636_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	32.3	1.5e-20
>prophage 7
NZ_CP046280	Salmonella enterica strain FDAARGOS_688 chromosome, complete genome	4575198	2239832	2249003	4575198	tRNA	Enterobacteria_phage(71.43%)	10	NA	NA
WP_023137006.1|2239832_2241866_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
WP_000703136.1|2242106_2242565_+	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	73.2	7.6e-54
WP_156016999.1|2242736_2243267_+	DUF1307 domain-containing protein	NA	Q9EYF5	Enterobacteria_phage	38.1	9.5e-16
WP_156017001.1|2243323_2243791_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	89.7	5.7e-73
WP_000598637.1|2243837_2244557_-	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000272850.1|2244553_2246239_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
WP_001240416.1|2246461_2247193_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_001261696.1|2247252_2247360_+	protein YohO	NA	NA	NA	NA	NA
WP_000824854.1|2247340_2248072_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000569166.1|2248055_2249003_-	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	27.8	3.7e-10
>prophage 1
NZ_CP046281	Salmonella enterica strain FDAARGOS_688 plasmid unnamed1, complete sequence	58747	0	14391	58747	transposase	Vibrio_phage(12.5%)	16	NA	NA
WP_094888772.1|1031_1520_-	cytoplasmic protein	NA	NA	NA	NA	NA
WP_094888771.1|1777_2893_+	DNA-binding protein	NA	NA	NA	NA	NA
WP_094888778.1|3011_3749_+	3'-5' exonuclease	NA	K7RFY5	Vibrio_phage	36.0	1.3e-26
WP_094888770.1|3801_4197_+	hypothetical protein	NA	NA	NA	NA	NA
WP_094915154.1|4193_4805_+	DUF2913 family protein	NA	NA	NA	NA	NA
WP_000728919.1|4801_5743_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	Q2A0A7	Sodalis_phage	54.7	4.7e-74
WP_156017682.1|5883_6024_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080188499.1|6157_7363_+	ParA family protein	NA	A0A077SL49	Escherichia_phage	69.3	3.1e-163
WP_077917409.1|7359_8337_+	ParB/RepB/Spo0J family partition protein	NA	A0A1B0V750	Salmonella_phage	53.2	1.1e-83
WP_156017685.1|8418_9693_-	translesion error-prone DNA polymerase V subunit UmuC	NA	F1C5A5	Cronobacter_phage	64.0	4.7e-154
WP_094888767.1|10294_10834_-	DNA breaking-rejoining protein	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	59.6	1.0e-62
WP_156017688.1|11003_11201_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023197482.1|11606_12113_+	antirestriction protein	NA	A0A1I9S7Y0	Rhodococcus_phage	28.9	1.1e-08
WP_020833574.1|12155_12347_+	hypothetical protein	NA	NA	NA	NA	NA
WP_114053208.1|13284_13506_-	hypothetical protein	NA	NA	NA	NA	NA
WP_065680751.1|13836_14391_+	single-stranded DNA-binding protein	NA	A0A0A0P1Q9	Enterobacteria_phage	74.0	3.3e-51
>prophage 2
NZ_CP046281	Salmonella enterica strain FDAARGOS_688 plasmid unnamed1, complete sequence	58747	36556	38095	58747	transposase	Stx2-converting_phage(100.0%)	1	NA	NA
WP_094915202.1|36556_38095_+|transposase	IS66 family transposase	transposase	A0A0P0ZEB3	Stx2-converting_phage	92.4	2.2e-275
>prophage 3
NZ_CP046281	Salmonella enterica strain FDAARGOS_688 plasmid unnamed1, complete sequence	58747	51399	53452	58747	integrase	Macacine_betaherpesvirus(50.0%)	2	43488:43501	54103:54116
43488:43501	attL	TGATCTGACAGGCT	NA	NA	NA	NA
WP_094915158.1|51399_52140_+|integrase	site-specific integrase	integrase	I3WFA4	Macacine_betaherpesvirus	58.6	5.4e-25
WP_140428183.1|52462_53452_-	RepB family plasmid replication initiator protein	NA	J9Q7H0	Salmonella_phage	64.3	5.0e-103
54103:54116	attR	AGCCTGTCAGATCA	NA	NA	NA	NA
