assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_009730015.1_ASM973001v1	NZ_CP046291	Salmonella enterica strain FDAARGOS_712 chromosome, complete genome	1	2275060-2275142	1	CRISPRCasFinder	no		cas3,DinG,DEDDh,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	Orphan	CGCTTATCGGGCCTACCGCGTTGATAT	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	NA,NA	NA|383aa|up_9|NZ_CP046291.1_2261661_2262810_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|639aa|up_8|NZ_CP046291.1_2263040_2264957_-	PRK15083, PRK15083, PTS system mannitol-specific transporter subunit IICBA; Provisional	NA|121aa|up_7|NZ_CP046291.1_2265490_2265853_+	pfam11742, DUF3302, Protein of unknown function (DUF3302)	NA|379aa|up_6|NZ_CP046291.1_2265855_2266992_+	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms]	NA|203aa|up_5|NZ_CP046291.1_2267089_2267698_+	PRK10357, PRK10357, putative glutathione S-transferase; Provisional	NA|464aa|up_4|NZ_CP046291.1_2267796_2269188_+	PRK04311, PRK04311, selenocysteine synthase; Provisional	NA|617aa|up_3|NZ_CP046291.1_2269184_2271035_+	PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation factor; Provisional	NA|384aa|up_2|NZ_CP046291.1_2271220_2272372_+	PRK09860, PRK09860, putative alcohol dehydrogenase; Provisional	NA|294aa|up_1|NZ_CP046291.1_2272443_2273325_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|513aa|up_0|NZ_CP046291.1_2273493_2275032_+	cd07116, ALDH_ACDHII-AcoD, Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like	NA|652aa|down_0|NZ_CP046291.1_2275261_2277217_-	COG3533, COG3533, Uncharacterized protein conserved in bacteria [Function unknown]	NA|272aa|down_1|NZ_CP046291.1_2277480_2278296_+	COG4753, COG4753, Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]	NA|232aa|down_2|NZ_CP046291.1_2278456_2279152_-	PRK12347, sgbE, L-ribulose-5-phosphate 4-epimerase; Reviewed	NA|287aa|down_3|NZ_CP046291.1_2279145_2280006_-	PRK13210, PRK13210, L-ribulose-5-phosphate 3-epimerase	NA|217aa|down_4|NZ_CP046291.1_2280010_2280661_-	PRK13305, sgbH, 3-keto-L-gulonate-6-phosphate decarboxylase UlaD	NA|499aa|down_5|NZ_CP046291.1_2280657_2282154_-	cd07802, FGGY_L-XK, L-xylulose kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|329aa|down_6|NZ_CP046291.1_2282157_2283144_-	cd13679, PBP2_TRAP_YiaO_like, Substrate-binding domain of 2,3-diketo-L-gulonate-binding Tripartite ATP-independent  Periplasmic transport system and related proteins; the type 2 periplasmic-binding protein fold	NA|426aa|down_7|NZ_CP046291.1_2283155_2284433_-	PRK15060, PRK15060, 2,3-diketo-L-gulonate transporter large permease YiaN	NA|158aa|down_8|NZ_CP046291.1_2284435_2284909_-	PRK09877, PRK09877, 2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM; Provisional	NA|311aa|down_9|NZ_CP046291.1_2285047_2285980_-	pfam16154, DUF4862, Domain of unknown function (DUF4862)
GCF_009730015.1_ASM973001v1	NZ_CP046291	Salmonella enterica strain FDAARGOS_712 chromosome, complete genome	2	2708669-2708908	1	PILER-CR	no		cas3,DinG,DEDDh,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	Orphan	TTTTACAGGGCGACAGGATGAATGACTGTCCACGACACTATACCCAAAAGAAA	53	1	1	2708836-2708890	NZ_CP046291.1_2708909-2708963	NA	2	2	Orphan	cas3,DinG,DEDDh,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	NA,NA|55aa|down_8|NZ_CP046291.1_2721152_2721317_-	NA|348aa|up_9|NZ_CP046291.1_2697518_2698562_-	PRK10309, PRK10309, galactitol-1-phosphate 5-dehydrogenase	NA|458aa|up_8|NZ_CP046291.1_2698605_2699979_-	COG3775, GatC, Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]	NA|95aa|up_7|NZ_CP046291.1_2699982_2700267_-	PRK10310, PRK10310, PTS galactitol transporter subunit IIB	NA|155aa|up_6|NZ_CP046291.1_2700297_2700762_-	PRK09665, PRK09665, PTS galactitol transporter subunit IIA	NA|424aa|up_5|NZ_CP046291.1_2700776_2702048_-	PRK15052, PRK15052, tagatose-bisphosphate aldolase subunit GatZ	NA|285aa|up_4|NZ_CP046291.1_2702167_2703022_-	PRK09195, gatY, tagatose-bisphosphate aldolase; Reviewed	NA|524aa|up_3|NZ_CP046291.1_2703279_2704851_-	TIGR03248, galactar-dH20, galactarate dehydratase	NA|257aa|up_2|NZ_CP046291.1_2705380_2706151_+	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	NA|297aa|up_1|NZ_CP046291.1_2706176_2707067_+	PRK11559, garR, tartronate semialdehyde reductase; Provisional	NA|382aa|up_0|NZ_CP046291.1_2707164_2708310_+	PRK10342, PRK10342, glycerate kinase I; Provisional	NA|313aa|down_0|NZ_CP046291.1_2709643_2710582_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|down_1|NZ_CP046291.1_2710679_2711669_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|down_2|NZ_CP046291.1_2711689_2713021_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|down_3|NZ_CP046291.1_2713087_2714296_+	PRK12379, PRK12379, propionate kinase	NA|765aa|down_4|NZ_CP046291.1_2714329_2716624_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|455aa|down_5|NZ_CP046291.1_2716693_2718058_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|down_6|NZ_CP046291.1_2718372_2719704_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|down_7|NZ_CP046291.1_2719729_2721040_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_8|NZ_CP046291.1_2721152_2721317_-	NA	NA|234aa|down_9|NZ_CP046291.1_2721340_2722042_-	COG1741, COG1741, Pirin-related protein [General function prediction only]
GCF_009730015.1_ASM973001v1	NZ_CP046291	Salmonella enterica strain FDAARGOS_712 chromosome, complete genome	3	3039209-3041128	2,1,2	CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,DinG,DEDDh,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	31,31,26	31	TypeI-E	cas3,DinG,DEDDh,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	NA,NA	NA|381aa|up_9|NZ_CP046291.1_3024897_3026040_+	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]	NA|919aa|up_8|NZ_CP046291.1_3026083_3028840_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_7|NZ_CP046291.1_3028897_3030193_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_6|NZ_CP046291.1_3030244_3032479_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|119aa|up_5|NZ_CP046291.1_3032563_3032920_+	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|99aa|up_4|NZ_CP046291.1_3032885_3033182_+	COG3668, ParE, Plasmid stabilization system protein [General function prediction only]	NA|267aa|up_3|NZ_CP046291.1_3034058_3034859_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP046291.1_3035086_3036724_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP046291.1_3036806_3038105_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP046291.1_3038240_3038912_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|NZ_CP046291.1_3041225_3042023_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|NZ_CP046291.1_3042110_3042473_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP046291.1_3042909_3044709_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP046291.1_3044708_3046421_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP046291.1_3046496_3047231_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|NZ_CP046291.1_3047318_3048272_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|down_6|NZ_CP046291.1_3048715_3051379_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|520aa|down_7|NZ_CP046291.1_3051390_3052950_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|183aa|down_8|NZ_CP046291.1_3052946_3053495_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|down_9|NZ_CP046291.1_3053508_3054567_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI
GCF_009730015.1_ASM973001v1	NZ_CP046291	Salmonella enterica strain FDAARGOS_712 chromosome, complete genome	4	3057263-3058699	3,2,3	CRISPRCasFinder,CRT,PILER-CR	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,DinG,DEDDh,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	23,23,21	23	TypeI-E	cas3,DinG,DEDDh,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3	NA,NA	NA|245aa|up_9|NZ_CP046291.1_3046496_3047231_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|NZ_CP046291.1_3047318_3048272_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|up_7|NZ_CP046291.1_3048715_3051379_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|520aa|up_6|NZ_CP046291.1_3051390_3052950_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|183aa|up_5|NZ_CP046291.1_3052946_3053495_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_4|NZ_CP046291.1_3053508_3054567_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP046291.1_3054577_3055324_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP046291.1_3055305_3055956_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_CP046291.1_3055952_3056873_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP046291.1_3056872_3057166_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_CP046291.1_3058710_3059757_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP046291.1_3060007_3060916_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP046291.1_3060925_3062365_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP046291.1_3062351_3062957_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|NZ_CP046291.1_3062974_3063331_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP046291.1_3063521_3063833_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP046291.1_3063851_3064562_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP046291.1_3064561_3065041_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP046291.1_3065037_3066087_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP046291.1_3066067_3066829_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
